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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049536 ID=TCONS_00049536|Name=TCONS_00049536|organism=Clytia hemisphaerica|type=transcript|length=704bp
ctagtctgaatcgcagacctctacaaaaccgcaggtagtataggtctgct
taatgatcgaCAACCAGCTTTCCGATTCGGGTAATTTATCGTGCGTGTAT
TTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCGAGTTGA
AAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTATGAGTT
TTAAAACAAGGGAGCAAGTTacaaacaagatggcggagaacTCGCCTGTG
CCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCtgaaacagtcaaa
aaacacTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACACCATCA
ATCATACAGGggccaaatattttgtcaagGTGGCGGAGGAAACTTTTATA
TGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCTCAAGTT
GAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTCTGATTG
ATACCAATGAGGAAGAAGTAGACGAACCAGTGTCTGTCCGATCGTTTGCT
TGCCAAACCGAGTTATCTTTTGCTGTTTCGAAATCAGAGGTCACCCGAAG
TTTTGTTTATGTCAGCTGGCCAAGTGGATCCAGAATTACAGAGGTTGACG
GTGAATTTTCTccaaccattttcaaaagtacCCGAAAGGAAGACCTCTTA
GGCT Run BLAST on NCBI protein sequence of TCONS_00049536-protein >TCONS_00049536-protein ID=TCONS_00049536-protein|Name=TCONS_00049536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MIDNQLSDSGNLSCVYFTECWRVTIEKRVVRVENVTSSFICSVRLRTMSF
KTREQVTNKMAENSPVPEVVEAIKCYLCLKQSKNTWDRNRFTKSLQDTIN
HTGAKYFVKVAEETFICQSCKRMMEKLKNLLKLRDRIVDMVMDEHKTLID
TNEEEVDEPVSVRSFACQTELSFAVSKSEVTRSFVYVSWPSGSRITEVDG
EFSPTIFKSTRKEDLLG Run BLAST on NCBI transcript from alignment at scaffold_160:55769..61417- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049536 ID=TCONS_00049536|Name=TCONS_00049536|organism=Clytia hemisphaerica|type=transcript|length=5649bp|location=Sequence derived from alignment at scaffold_160:55769..61417- (Clytia hemisphaerica)
CTAGTCTGAATCGCAGACCTCTACAAAACCGCAGGTAGTATAGGTCTGCT
TAATGATCGACAACCAGCTTTCCGATTCGGGTAATTTATCGTGCGTGTAT
TTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCGAGTTGA
AAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTATGAGTT
TTAAAACAAGGGAGCAAGTTACAAACAAGATGGCGGAGAACTCGCCTGTG
CCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCTGAAACAGTCAAA
AAACACTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACACCATCA
ATCATACAGGGGCCAAATATTTTGTCAAGGTGGCGGAGGAAACTTTTATA
TGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCTCAAGTT
GAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTCTGGTAT
GAATAATAGGCTATTATATCTCATTTAGTACTTTGTCCTGTTCTAAGTTT
ATTTTGCTGAAACTACTTTTTGACAACATGCTTTTGGAGTTTTTATAATA
TAGACTGGGGTGAGTGATAGAGCCCATAGAGACTCTCTCGGCTCTTGACT
TGATTATTAATCATCAATGACTTTATTCTTCTTTCATCATTTGGCCCAGG
CTCTCCCCTACCTGCCCCCACTCATACAATCAATAATTCCGTTAATCAAT
ATCAAATCCATCATTCCTTTATTTCTCAATTGGGGAAGTTATTGGTTTTA
TCACGTATATAAACAATAATCCTTAGCAGTTCTGTAATTTTACTTTGGCA
TAGTGTCTAGGAAAAATGTAGATAGCATATCGATACTTGCACATCATTGA
TTAACGACCAAACTCTCTCACTAATACTATCGATACATTTTTTTCAAGTA
ATTTGATATCGATGGATTGGATATCGACTGATGATTGAGTATATTCCAGT
ATATTCCAGAATCTTGAATGATATTAATTGATCATTGATATACCTTTTGC
TAAGGATATCATGCTAGACAATTGAAATTTGATAATTATTATTCATTAAT
TCTTAGCCTATGTCATGTTATAGGCGTTTGTACCTACGTATATACGAGGG
ATGCGTATATGCGTCCTGAGAGAGAGTCTTCTTTGAGCTCAGATTCCAAG
CTATGTTTTGATACTGTAAGGATCAGGTTATGATTTTCGGGAAGAGAATA
AAAAGTACTTTCCGTATAGTGGTCATTCTAAGTGGTCATAGGGTTTGGAT
GTAAGGAAATTTCAAAACAAACGTCTGAAAACAGTAAAAAATGGTGGCAA
GGGAGGTTCTTCTATGTGGTTTAGTAAGGAATTGTCTTTCTTTAAGTGTT
TTAAAGTATTTTTCTAGTTTTTCTTTTGATATTTCTTGACAACAAAGGTA
TTTTCTAACTACCCTGTAAGTTTTTACCTTTTGATTAAAACTGATTCAAA
TCTCCCTTTGATTATTTGGCTAATAATATTGAGTAAACCTTTTTTGGTTG
GGGGGGGGGCGTCCACATAGTACGTACGCACTAAGGGGGATTGGGGTCTT
CTCAAAAGCGTATGCNGAGACTCTCTCGGCTCTTGACTTGATTATTAATC
ATCAATGACTTTATTCTTCTTTCATCATTTGGCCCAGGCTCTCCCCTACC
TGCCCCCACTCATACAATCAATAATTCCGTTAATCAATATCAAATCCATC
ATTCCTTTATTTCTCAATTGGGGAAGTTATTGGTTTTATCACGTATATAA
ACAATAATCCTTAGCAGTTCTGTAATTTTACTTTGGCATAGTGTCTAGGA
AAAATGTAGATAGCATATCGATACTTGCACATCATTGATTAACGACCAAA
CTCTCTCACTAATACTATCGATACATTTTTTTCAAGTAATTTGATATCGA
TGGATTGGATATCGACTGATGATTGAGTATATTCCAGTATATTCCAGAAT
CTTGAATGATATTAATTGATCATTGATATACCTTTTGCTAAGGATATCAT
GCTAGACAATTGAAATTTGATAATTATTATTCATTAATTCTTAGCCTATG
TCATGTTATAGGCGTTTGTACCTACGTATATACGAGGGATGCGTATATGC
GTCCTGAGAGAGAGTCTTCTTTGAGCTCAGATTCCAAGCTATGTTTTGAT
ACTGTAAGGATCAGGTTATGATTTTCGGGAAGAGAATAAAAAGTACTTTC
CGTATAGTGGTCATTCTAAGTGGTCATAGGGTTTGGATGTAAGGAAATTT
CAAAACAAACGTCTGAAAACAGTAAAAAATGGTGGCAAGGGAGGTTCTTC
TATGTGGTTTAGTAAGGAATTGTCTTTCTTTAAGTGTTTTAAAGTATTTT
TCTAGTTTTTCTTTTGATATTTCTTGACAACAAAGGTATTTTCTAACTAC
CCTGTAAGTTTTTACCTTTTGATAACTGATTCAAATCTCCCTTTGATTAT
TTGGCTAATAATATTGAGTATATAAACCTTTTTTGGTTGGGGGGGGCCGT
CCACATAGGAGGGGGGGGTCTTCTCAAAAGCGTATGTTTGCGTACAGGGG
GAGGGGAGGGGTCAAAGGAAATGCAGAGAAAATTTTGTTATAGCCACTTT
TATGCTTCTTATATGCATCAAGGAAGAAGAAAAAGTTTCTTAATAAACAT
TGAGTTTCATGTATGAAATAAAGGTCCAAACCAAATAATTTGATTTCGAA
TTTTTCTTCAACCGATGGGGAGGGGGTGAATGAAAAAGTACGCACTTACC
AGGGGGTATAGCCATTTGCGTACAGGGGGAGGTTTTCAACATTTTCAACA
GCATACCTTAAGTGGATAAATTTTGGCGGGGATTAAATTTGGCGAATTAA
ATCCTCACCAAAATTTCCAAATTCAGCAATTCGCCAAATAAAATCCCCGC
CAAATTTAACAAAATGAGAATTATGTGAAAAGTCATAACTGTTTAGTATA
TTTTTGAGTAATTTTCACCCATTTCAGTGTGACAATATTTCCAATTCGCG
AAATAAAATCCTCGCCAAATTTTACTAAATTGATCTATCGCCAAATTAAA
TCCCTGCCAAAAATCGTATTTTGGCCAATCGCCAAATTAAATCCACGCCA
AAATTTATCCACTTAAGGTATGTACTATCAGGTACTATGTGGACGACCCC
TGGAATAGAAGTTTTAGTAGCTGAAAATTACCAACTAAAACCTTAATTTT
ACACCCGAAAAAGGGTCAAAATTTTCATTTTTCGCTCAAATGTAAAATGT
AATATTTTCAAAAGTAATCATACAATTTGACTGATTTTGGTCTTATTTGA
AGCCAGACTATATAAGGAATAATTTTTATATTGCCGCACCATTTTTTAAC
CAAAATGTTGGACGTGCGATAGAAAAATTGCGAAATTTTATGAGGTTTTT
GAAGGATAACAAGAAAATAGATTCATATGGTGTATGCTTAGTTTTTCTTG
CACTTTATTACTGCAATATTACAGTTTAAATTCCTAACCATTGTTTCCTT
TTTTCCTTTTATTCTTGAATTAGAACTAATATAGTAATAACAACTTTTAT
GATTGATGGGGGGCAGAGAGATTTTTGGTGGCAAGATGTGGAAAATGAGA
AACAGACCCTGATGGGTACTATGGGTAATTGGGCCTTTGGTATAGATTTC
TACAAGGTAGTATTTAGTTAGAGAGTTGGGAATGTTATTCACCTGATGGA
CAATTGTAAAAACTTCACTTTATCTACAACGATTCTAATAGATTGATACC
AATGAGGAAGAAGTAGACGAACCAGTGTCTGTCCGATCGTTTGCTTGCCA
AACCGAGTTATCTTTTGCTGTTTCGAAATCAGAGGTCACCCGAAGTTTTG
TTTATGTCAGCTGGCCAAGTGGATCCAGAATTACAGAGGTAAATTTTACT
TATGATCATATAAAAGAAAATGCAATTGTATTCGTAACAAAGAAAAATTA
TTAGAATCTTTTGGGAAATCGACATTGGTTCTTTGATTCGAAATAGTAGA
CTGCAAATGATTTTTTTTTGATTTTGATAAGTTTTGATGTTTCATATTAT
TTTGATGCTGTAAACTGTAGCAAGGTTCTTTTAAAATTCAATTATTTCAC
ACCGCTAGTAAATAACAACCCTGGGTTTACAGACATCTAGAAAACGAAAA
AAAATCGTGAAAATGATTAGTTTAGCTTGGATATCCAGGCTAACTGCTTT
AGTTTTAACTACAATTTAGACGATTTTTTATTTTATAGCTTAAACCTCAG
TTTAATTCATTGGCAGTAAGACTACTCAGAAACAATCCTATCGGGTTCTG
TGTCCTACACATGGAAGACACCAGGAAAGAAATTTTGAGTTATTTACAGA
AAGACATCAGAAAAGAATGCCAAAGAATATGTCTTGAAAAGGTATGATTT
TTTTCTGTGATGTTTTACATTCAGTTTGTTTTAGCCAGATTCTTCAGTTG
AAAACATACAGAAACATCAATCCAATTTTGAGGTTTGGAAGCTGCTATTG
TATGTGCATCGTCAAATTTACTTTGATTATGTATGTATTGTAGTTGCTTT
TTGAATCAGAATCTGGTTTGTGTTTTCTCATGTTATTCAATAATCACGCA
TGGTTAGAGACAGACAAAATTACAAACATTTTTATCAGGAGAAACTAGAT
CAAACAGGTCCTAAAGACGTGAAGTAGGGAGTCAATCTTGTCGGTAGTTC
TGAAAATTATAAGAACATTGAAGTTCCGTTGTAACTTTAATTTCATTTAT
CATTCTTTTTTACATTTTGGAGGTTGAATAAATCTTTGAATTTTCAATTT
GAACTGTAGTAGTTTGGAGTGAAGTACTCTTGGGTACCTAATAGCCGTCC
CCCCCCCGCTAATTAATTTTTCAAAAATTTTCCACCCAGGACATTTTTAT
TCCAACCCCCCCCCCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGTACTTTATGATAAATTTTTATTAATATCTAGGTTGACGGTGAA
TTTTCTCCAACCATTTTCAAAAGTACCCGAAAGGAAGACCTCTTAGGCT Coding sequence (CDS) from alignment at scaffold_160:55769..61417- >TCONS_00049536 ID=TCONS_00049536|Name=TCONS_00049536|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_160:55769..61417- (Clytia hemisphaerica)
GTTGACGGTGAATTTTCTCCAACCATTTTCAAAAGTACCCGAAAGGAAGA
CCTCTTAGGCATTGATACCAATGAGGAAGAAGTAGACGAACCAGTGTCTG
TCCGATCGTTTGCTTGCCAAACCGAGTTATCTTTTGCTGTTTCGAAATCA
GAGGTCACCCGAAGTTTTGTTTATGTCAGCTGGCCAAGTGGATCCAGAAT
TACAGAGATGATCGACAACCAGCTTTCCGATTCGGGTAATTTATCGTGCG
TGTATTTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCGA
GTTGAAAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTAT
GAGTTTTAAAACAAGGGAGCAAGTTACAAACAAGATGGCGGAGAACTCGC
CTGTGCCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCTGAAACAG
TCAAAAAACACTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACAC
CATCAATCATACAGGGGCCAAATATTTTGTCAAGGTGGCGGAGGAAACTT
TTATATGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCTC
AAGTTGAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTCT
GGTTGACGGTGAATTTTCTCCAACCATTTTCAAAAGTACCCGAAAGGAAG
ACCTCTTAGGCATTGATACCAATGAGGAAGAAGTAGACGAACCAGTGTCT
GTCCGATCGTTTGCTTGCCAAACCGAGTTATCTTTTGCTGTTTCGAAATC
AGAGGTCACCCGAAGTTTTGTTTATGTCAGCTGGCCAAGTGGATCCAGAA
TTACAGAGATGATCGACAACCAGCTTTCCGATTCGGGTAATTTATCGTGC
GTGTATTTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCG
AGTTGAAAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTA
TGAGTTTTAAAACAAGGGAGCAAGTTACAAACAAGATGGCGGAGAACTCG
CCTGTGCCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCTGAAACA
GTCAAAAAACACTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACA
CCATCAATCATACAGGGGCCAAATATTTTGTCAAGGTGGCGGAGGAAACT
TTTATATGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCT
CAAGTTGAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTC
TGGTTGACGGTGAATTTTCTCCAACCATTTTCAAAAGTACCCGAAAGGAA
GACCTCTTAGGCATTGATACCAATGAGGAAGAAGTAGACGAACCAGTGTC
TGTCCGATCGTTTGCTTGCCAAACCGAGTTATCTTTTGCTGTTTCGAAAT
CAGAGGTCACCCGAAGTTTTGTTTATGTCAGCTGGCCAAGTGGATCCAGA
ATTACAGAGATGATCGACAACCAGCTTTCCGATTCGGGTAATTTATCGTG
CGTGTATTTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTC
GAGTTGAAAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACT
ATGAGTTTTAAAACAAGGGAGCAAGTTACAAACAAGATGGCGGAGAACTC
GCCTGTGCCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCTGAAAC
AGTCAAAAAACACTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGAC
ACCATCAATCATACAGGGGCCAAATATTTTGTCAAGGTGGCGGAGGAAAC
TTTTATATGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTC
TCAAGTTGAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACT
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049536-exon-scaffold_160-1575043694:60922..61417 | TCONS_00049536-exon-scaffold_160-1575043694:60922..61417 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1575043694:57480..57626 | TCONS_00049536-exon-scaffold_160-1575043694:57480..57626 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1575043694:55769..55829 | TCONS_00049536-exon-scaffold_160-1575043694:55769..55829 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1510915933:60922..61417 | TCONS_00049536-exon-scaffold_160-1510915933:60922..61417 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1510915933:57480..57626 | TCONS_00049536-exon-scaffold_160-1510915933:57480..57626 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1510915933:55769..55829 | TCONS_00049536-exon-scaffold_160-1510915933:55769..55829 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1491911889:60922..61417 | TCONS_00049536-exon-scaffold_160-1491911889:60922..61417 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1491911889:57480..57626 | TCONS_00049536-exon-scaffold_160-1491911889:57480..57626 | Clytia hemisphaerica | exon |
| TCONS_00049536-exon-scaffold_160-1491911889:55769..55829 | TCONS_00049536-exon-scaffold_160-1491911889:55769..55829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:55769..61417 - |
Blast
The following BLAST results are available for this feature:
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