TCONS_00049534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049534
Unique NameTCONS_00049534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049534 ID=TCONS_00049534|Name=TCONS_00049534|organism=Clytia hemisphaerica|type=transcript|length=2583bp
ACAAAAGATGTCACCAAGCTATCAACTATGTCAACCACAAATGCAATTGT
AATGGCCGCTGCTGTCATGTTTAAAAACAATTCAAGAAGAGTCACTACTG
TTCAGCTATATTTGACACTGATGCAAAATCACTCATCATACACCTCTTTA
TTAAAACGTTTCGGTGCCCTTAAACTTCTTGTGAGTAACCCTTACATTAA
TAAGAAGATGGACGAATTTGGGGAAGGTCATGACGATATGGTTCGGAGGC
GTATTTTTAAGAAAGAAGGTGTTAAAGAGACAGAGGTCAAAGTCGTGAGA
AAACCAGATCATTTGGACGAAACAGCGAGATGGGCAAAGTATCGGAAAAT
GGAAGATATAGGCCCAAAGATTCCTTTGTCAGGTAAAATTTCTTAATACT
TTCGAAAGCTCTATCAATTCCTCTAAATTAACACaatttaggcgtacaaa
ctttcgcgagcaaaaACTTTCGCTATTTTCGCGAATTTAGGCCCTTTCCG
AAATTCCAGGAAGGactattcgcgaaagtttatgctcgcgaaaaattctt
gaaaaaattaaaaatctgcAAAGCtccaaactttgaataaaacgtaactt
ttatggcactttttagcctgctaaaagactaatatgTCAAagaacaaatg
tttcaagctaAACGAAGAAGAATTTGTTCCTGTAAGCTATTTTTTAtgtg
aaaatctcaattttaaGTCTTGATTCgtaaaagtttatgctcgcgaaagt
ttgtacgcctaaaatatatctaaagtttttcaatttctctAAATTAGCAC
TCATTATAAAGTCCTAGTTAAATTTAAGACAGTGTCTAGTTTTGGTTTCT
TATTCTTCAACAAATTCGAAGGAACTATTAAATATTACACGAGAATCATC
ATTTAGTTAAAAAATGTACAATGACTATGAAAATTTAcacgaatagacct
tttcataaattacgtcacgaacatcaatTGCCTCGTATTCACACaaattt
ccatggtgatcataTCCCTTGATGATGATAACccttgaatgattttttta
taaatagaaagtagctgtaataaaatccgctgggagttaatcaccatggc
aataatttcaaaacgaggcaagtgatgttcgtgacgttatttatgaaaag
gtgtattgtattatgtttaaaaaatacATCATATTTTTAGACATTCTCAA
CCAAActaatttggagatttttgaaaaacatgtcGAGAAGAACACAACTT
TAGGTAGGATACTACTTAATTTTCACGCTAATTTCTAGTGCTACTAATTG
AATTTTGAGTGGAATATGATGAAACGTGAAACGTGATTATTAAAGGCAGT
TTACATAACTTTAAAATGATTTAATTTTGCAAGGGCTAGATTTTGCAGAT
GACGCTTTTTGGgataatattttcacgatttcgTGGATTTATACTGCCAA
AATCTACATACTAGTTGTTTATATATACTTTCTAACGTTTCTTTAACGTC
AATAAGGacaattttagaaatttgtttatATGATTTTAGAAATGACGcct
tttcaaattaaaaattcaGCATGAATTCACGAAATCTGCGAAAGTTAGCC
TTCACAAAATCTAATGCTATTAGCTTTATTGGTTCGTTTAGAAACTAACA
CACAAAACGAAGAATCCGTTATTGAGAAAATGGTCGCTCCACCAATATCT
GGTAACAATATCAtttaatttcaactttttccatAGTCAgaataatttta
atatttatcTACACCATTTCATAAAGCTACGTACGTTGGAAACCCTTTTC
TTATTTACACAGGTTCTACACCCAAAAGGTCCGACGCCAATCCCAGAATC
ATCAGGACTGAACGATCTGGCGATCAATCCAATTCCGTCGCGGCTGAACA
GTCTGTTGTTAACTTTGAAATTACCACGGTTGAACGACCAAGCATTTCCA
ATACTGAAAAGTCCGCTAAAAAATCCTTGGAGTTCAATTTCACTGAAAAA
GATTTCAAGGCTGTTATCGACAATTTGGATACCACCCATAAAGTGTCAGA
CATGGACGAGAACAACCAAAACGTCAGCACACACCATACTGCGAAACTTG
CTGTTTTTGATAGAGTCACCCCACCTGACGAATTAAGCGGAACGCACCCA
AAATACACCATTGACGAATTGGATAACAGTTCGTTTCTTTGTTCTCCAGC
CGAACATGTAAAACAACGTCTGAACTATATTGTGTTAATATCGAGAATCT
TGACTGAACACGTAAAATGCTTGAAACCATTCCAGTCTGAAGTAATCCGT
CACATCCGCCACGATCATTCtaaagaaatgagaaaaaagagtGACACTGT
AAGTCTAAGATTATTCACAAGATTATTTATAAGGTTATTCACGTTTCAAA
TTCAAATCCTGGCTGggacaatagacgatatcggatttagataaatgcaa
tgcattctggtttctagggactctcaaaggaattataatagatcaattaa
atagattataattcctttgagagtccctagaaaccagaatgcattgcatt
tatctaaatccgatatcgtctattatccCCGAG
Run BLAST on NCBI

protein sequence of TCONS_00049534-protein

>TCONS_00049534-protein ID=TCONS_00049534-protein|Name=TCONS_00049534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
TKDVTKLSTMSTTNAIVMAAAVMFKNNSRRVTTVQLYLTLMQNHSSYTSL
LKRFGALKLLVSNPYINKKMDEFGEGHDDMVRRRIFKKEGVKETEVKVVR
KPDHLDETARWAKYRKMEDIGPKIPLSGKIS
Run BLAST on NCBI

transcript from alignment at scaffold_160:52536..55694-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049534 ID=TCONS_00049534|Name=TCONS_00049534|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at scaffold_160:52536..55694- (Clytia hemisphaerica)
ACAAAAGATGTCACCAAGCTATCAACTATGTCAACCACAAATGCAATTGT
AATGGCCGCTGCTGTCATGTTTAAAAACAATTCAAGAAGAGTCACTACTG
TTCAGCTATATTTGACACTGATGCAAAATCACTCATCATACACCGTAAAT
CATTTAAAAATAATCTTTCTACCTAATTTTTTTCCAAAAGAAATCTCCCC
CTCCCGCTAATTAATTTTTCGAAAATTTTCAGCCCAGGACATTCTTATTC
CAACCGCTCCGATTAATAATTTTTGGAAAATACTTTTTAAAGTTCCCTCC
TTTGCCACAATTCTGCTGCATTAGCCTCCTTTTCAAAAATTTTCATCTGG
CTAAAATTCTTTCAGTAATTTAAAGGCCCAAAAATGTCTGACGGGTCGCA
AAATTGAAAATTTTATCTGGCATGGTCTACATGTGATCATTCGAACCTTT
TTTCAACTTAGGTTTGGAAAAAAATCTATCAGGGTTCAAATTTTGCCAAT
CAAGAGAAATTGAGACTCGAAACAAAGTAGAGTCTTTTTTTATTTTTCAA
GCGAAAAATATTATATATCTCTCTATAATCTCTTTCAGTCTTTATTAAAA
CGTTTCGGTGCCCTTAAACTTCTTGTGAGTAACCCTTACATTAATAAGAA
GATGGACGAATTTGGGGAAGGTCATGACGATATGGTTCGGAGGCGTATTT
TTAAGAAAGAAGGTGTTAAAGAGACAGAGGTCAAAGTCGTGAGAAAACCA
GATCATTTGGACGAAACAGCGAGATGGGCAAAGTATCGGAAAATGGAAGA
TATAGGCCCAAAGATTCCTTTGTCAGGTAAAATTTCTTAATACTTTCGAA
AGCTCTATCAATTCCTCTAAATTAACACAATTTAGGCGTACAAACTTTCG
CGAGCAAAAACTTTCGCTATTTTCGCGAATTTAGGCCCTTTCCGAAATTC
CAGGAAGGACTATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGAAAAA
ATTAAAAATCTGCAAAGCTCCAAACTTTGAATAAAACGTAACTTTTATGG
CACTTTTTAGCCTGCTAAAAGACTAATATGTCAAAGAACAAATGTTTCAA
GCTAAACGAAGAAGAATTTGTTCCTGTAAGCTATTTTTTATGTGAAAATC
TCAATTTTAAGTCTTGATTCGTAAAAGTTTATGCTCGCGAAAGTTTGTAC
GCCTAAAATATATCTAAAGTTTTTCAATTTCTCTAAATTAGCACTCATTA
TAAAGTCCTAGTTAAATTTAAGACAGTGTCTAGTTTTGGTTTCTTATTCT
TCAACAAATTCGAAGGAACTATTAAATATTACACGAGAATCATCATTTAG
TTAAAAAATGTACAATGACTATGAAAATTTACACGAATAGACCTTTTCAT
AAATTACGTCACGAACATCAATTGCCTCGTATTCACACAAATTTCCATGG
TGATCATATCCCTTGATGATGATAACCCTTGAATGATTTTTTTATAAATA
GAAAGTAGCTGTAATAAAATCCGCTGGGAGTTAATCACCATGGCAATAAT
TTCAAAACGAGGCAAGTGATGTTCGTGACGTTATTTATGAAAAGGTGTAT
TGTATTATGTTTAAAAAATACATCATATTTTTAGACATTCTCAACCAAAC
TAATTTGGAGATTTTTGAAAAACATGTCGAGAAGAACACAACTTTAGGTA
GGATACTACTTAATTTTCACGCTAATTTCTAGTGCTACTAATTGAATTTT
GAGTGGAATATGATGAAACGTGAAACGTGATTATTAAAGGCAGTTTACAT
AACTTTAAAATGATTTAATTTTGCAAGGGCTAGATTTTGCAGATGACGCT
TTTTGGGATAATATTTTCACGATTTCGTGGATTTATACTGCCAAAATCTA
CATACTAGTTGTTTATATATACTTTCTAACGTTTCTTTAACGTCAATAAG
GACAATTTTAGAAATTTGTTTATATGATTTTAGAAATGACGCCTTTTCAA
ATTAAAAATTCAGCATGAATTCACGAAATCTGCGAAAGTTAGCCTTCACA
AAATCTAATGCTATTAGCTTTATTGGTTCGTTTAGAAACTAACACACAAA
ACGAAGAATCCGTTATTGAGAAAATGGTCGCTCCACCAATATCTGGTAAC
AATATCATTTAATTTCAACTTTTTCCATAGTCAGAATAATTTTAATATTT
ATCTACACCATTTCATAAAGCTACGTACGTTGGAAACCCTTTTCTTATTT
ACACAGGTTCTACACCCAAAAGGTCCGACGCCAATCCCAGAATCATCAGG
ACTGAACGATCTGGCGATCAATCCAATTCCGTCGCGGCTGAACAGTCTGT
TGTTAACTTTGAAATTACCACGGTTGAACGACCAAGCATTTCCAATACTG
AAAAGTCCGCTAAAAAATCCTTGGAGTTCAATTGTACGTCGTAAATCAAT
CTTTCTTTATATTCATCACGGGAGTTCTAGTCTTAAAAAAGTTTTGTTTT
CGAGCATTATAATAGTTCCGTTGTAATGTATTTTATGTAGTAATCTTATT
TCTTTTCCACAATAGTCACTGAAAAAGATTTCAAGGCTGTTATCGACAAT
TTGGATACCACCCATAAAGTGTCAGACATGGACGAGAACAACCAAAACGT
CAGCACACACCATACTGCGAAACTTGCTGTTTTTGATAGAGTCACCCCAC
CTGACGAATTAAGCGGAACGCACCCAAAATACACCATTGACGAATTGGAT
AACAGTTCGTTTCTTTGTTCTCCAGCCGAACATGTAAAACAACGTCTGAA
CTATATTGTGTTAATATCGAGAATCTTGACTGAACACGTAAAATGCTTGA
AACCATTCCAGTCTGAAGTAATCCGTCACATCCGCCACGATCATTCTAAA
GAAATGAGAAAAAAGAGTGACACTGTAAGTCTAAGATTATTCACAAGATT
ATTTATAAGGTTATTCACGTTTCAAATTCAAATCCTGGCTGGGACAATAG
ACGATATCGGATTTAGATAAATGCAATGCATTCTGGTTTCTAGGGACTCT
CAAAGGAATTATAATAGATCAATTAAATAGATTATAATTCCTTTGAGAGT
CCCTAGAAACCAGAATGCATTGCATTTATCTAAATCCGATATCGTCTATT
ATCCCCGAG

Coding sequence (CDS) from alignment at scaffold_160:52536..55694-

>TCONS_00049534 ID=TCONS_00049534|Name=TCONS_00049534|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_160:52536..55694- (Clytia hemisphaerica)
TCTTTATTAAAACGTTTCGGTGCCCTTAAACTTCTTGTGAGTAACCCTTA
CATTAATAAGAAGATGGACGAATTTGGGGAAGGTCATGACGATATGGTTC
GGAGGCGTATTTTTAAGAAAGAAGGTGTTAAAGAGACAGAGGTCAAAGTC
GTGAGAAAACCAGATCATTTGGACGAAACAGCGAGATGGGCAAAGTATCG
GAAAATGGAAGATATAGGCCCAAAGATTCCTTTGTCAGGTAAAATTTCTT
AAACAAAAGATGTCACCAAGCTATCAACTATGTCAACCACAAATGCAATT
GTAATGGCCGCTGCTGTCATGTTTAAAAACAATTCAAGAAGAGTCACTAC
TGTTCAGCTATATTTGACACTGATGCAAAATCACTCATCATACACCTCTT
TATTAAAACGTTTCGGTGCCCTTAAACTTCTTGTGAGTAACCCTTACATT
AATAAGAAGATGGACGAATTTGGGGAAGGTCATGACGATATGGTTCGGAG
GCGTATTTTTAAGAAAGAAGGTGTTAAAGAGACAGAGGTCAAAGTCGTGA
GAAAACCAGATCATTTGGACGAAACAGCGAGATGGGCAAAGTATCGGAAA
ATGGAAGATATAGGCCCAAAGATTCCTTTGTCAGGTAAAATTTCTTAAAC
AAAAGATGTCACCAAGCTATCAACTATGTCAACCACAAATGCAATTGTAA
TGGCCGCTGCTGTCATGTTTAAAAACAATTCAAGAAGAGTCACTACTGTT
CAGCTATATTTGACACTGATGCAAAATCACTCATCATACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031422XLOC_031422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049534-proteinTCONS_00049534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049534-exon-scaffold_160-1575043694:55551..55694TCONS_00049534-exon-scaffold_160-1575043694:55551..55694Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1575043694:53262..55106TCONS_00049534-exon-scaffold_160-1575043694:53262..55106Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1575043694:52536..53129TCONS_00049534-exon-scaffold_160-1575043694:52536..53129Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1510915933:55551..55694TCONS_00049534-exon-scaffold_160-1510915933:55551..55694Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1510915933:53262..55106TCONS_00049534-exon-scaffold_160-1510915933:53262..55106Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1510915933:52536..53129TCONS_00049534-exon-scaffold_160-1510915933:52536..53129Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1491911889:55551..55694TCONS_00049534-exon-scaffold_160-1491911889:55551..55694Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1491911889:53262..55106TCONS_00049534-exon-scaffold_160-1491911889:53262..55106Clytia hemisphaericaexon
TCONS_00049534-exon-scaffold_160-1491911889:52536..53129TCONS_00049534-exon-scaffold_160-1491911889:52536..53129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:52536..55694 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.128205	0	0.400547	0.309769	0.323682	0.284676	0.115642	0	0.0312212	0.227716	0.0995119	0.154972	0.0717546	0.167064	0.0698296	0.125407	0.302404	0.392865	0.271574	0.51038	0.0873668	0.18509	0.0782154	0.0349027	0.396993	0.802888	0.300015	0.305868
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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