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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049523 ID=TCONS_00049523|Name=TCONS_00049523|organism=Clytia hemisphaerica|type=transcript|length=1154bp
ttaagggctctgaccatagtcagaaaatagattttagtatctgaacataa
aattTATGGTTTacattctttaacacttttaacaaagaattgcctttata
aattgctttttaatcaaaccccttaagagtaattaagaacttaattgcaa
aaatgaNGTTTGTTGATTAACTGTGTTAGTTACTCGTTCTGGGTTTGTGT
TTTCCTTATCTCTGTCAAGTCGTGGTATATCCTCAATGTGGGTCTCTTCA
ATTTCTTGTTGTTTGACTCCGTTCCTTTCTTTTATCTCCCTAATACTCGG
CTCAACAATGAACGTGTTTTCCTTATTACGATTATCTCTATTCTCGTTAT
TTTTCAACTGGTCCATATTTATGGGAGATGATAGAAACTTATTAACATAG
TTCAACATTCGCGAATCGTTTATAGATAACCCGTCTAAAGGCGTTTGACC
TGCTTTATCTTTCAAATAAAGTAACTGTTCGAATTTCAAACCTGCATATT
TTTTAATCTCTTCAACACATTTTAAACTTCCTGATAAGACAGCGGCATGT
AAAATAGTTCGACCAGTAACTTTCGTAGACGAAGCCAAGTCGAAGTCTTT
ATGCAATACAAGCATATTATCAATGCCTTTCGGGTTACCGCTAGTAGCAC
AGATTAACAGAGTTGATAAGATTCGATTACCAGCTCCTATTTGCTGCATT
GGCATTGAAACACGTCGACCCAGGCTAGTCGTGTTCCCTTGTAACGCAAG
AGAAATAAGTTTATTCCACCACATATCAACCTCTAGCTTCAGTACCGCCC
CAGGAGGCACGCCTTGATCCGCCAAGCATCGATTGTTATCTAAATAACGC
CCATTGTATCCAATCTTTTGTAGTTCGTAAGGTATTCCTGTAATCTTTTC
GACATTGATTTTTAGATTATGTGAAGACAGCAGGATAGAACATTCGACAT
GTTCGGTTACACCAGTCGGTAGCAAAACTTGTAAAGACATATTTTCACTT
TCATATAGTTCTTTTTTATGTCTTATCCATTTTCCTTTTGATAATCTCGA
TATATTCTCACTTAAACCTCCAACAGTCTAAAGGATTTCACATTCAATAT
ATCGGAAAGATTTTCACATAATTTTGTCGCAAAGAAATATTTCTGGTAAT
TCGT Run BLAST on NCBI protein sequence of TCONS_00049523-protein >TCONS_00049523-protein ID=TCONS_00049523-protein|Name=TCONS_00049523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MSLQVLLPTGVTEHVECSILLSSHNLKINVEKITGIPYELQKIGYNGRYL
DNNRCLADQGVPPGAVLKLEVDMWWNKLISLALQGNTTSLGRRVSMPMQQ
IGAGNRILSTLLICATSGNPKGIDNMLVLHKDFDLASSTKVTGRTILHAA
VLSGSLKCVEEIKKYAGLKFEQLLYLKDKAGQTPLDGLSINDSRMLNYVN
KFLSSPINMDQLKNNENRDNRNKENTFIVEPSIREIKERNGVKQQEIEET
HIEDIPRLDRDKENTNPERVTNTVNQQXSFLQLSS Run BLAST on NCBI transcript from alignment at scaffold_16:253535..254688 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049523 ID=TCONS_00049523|Name=TCONS_00049523|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at scaffold_16:253535..254688 (Clytia hemisphaerica)
ACGAATTACCAGAAATATTTCTTTGCGACAAAATTATGTGAAAATCTTTC
CGATATATTGAATGTGAAATCCTTTAGACTGTTGGAGGTTTAAGTGAGAA
TATATCGAGATTATCAAAAGGAAAATGGATAAGACATAAAAAAGAACTAT
ATGAAAGTGAAAATATGTCTTTACAAGTTTTGCTACCGACTGGTGTAACC
GAACATGTCGAATGTTCTATCCTGCTGTCTTCACATAATCTAAAAATCAA
TGTCGAAAAGATTACAGGAATACCTTACGAACTACAAAAGATTGGATACA
ATGGGCGTTATTTAGATAACAATCGATGCTTGGCGGATCAAGGCGTGCCT
CCTGGGGCGGTACTGAAGCTAGAGGTTGATATGTGGTGGAATAAACTTAT
TTCTCTTGCGTTACAAGGGAACACGACTAGCCTGGGTCGACGTGTTTCAA
TGCCAATGCAGCAAATAGGAGCTGGTAATCGAATCTTATCAACTCTGTTA
ATCTGTGCTACTAGCGGTAACCCGAAAGGCATTGATAATATGCTTGTATT
GCATAAAGACTTCGACTTGGCTTCGTCTACGAAAGTTACTGGTCGAACTA
TTTTACATGCCGCTGTCTTATCAGGAAGTTTAAAATGTGTTGAAGAGATT
AAAAAATATGCAGGTTTGAAATTCGAACAGTTACTTTATTTGAAAGATAA
AGCAGGTCAAACGCCTTTAGACGGGTTATCTATAAACGATTCGCGAATGT
TGAACTATGTTAATAAGTTTCTATCATCTCCCATAAATATGGACCAGTTG
AAAAATAACGAGAATAGAGATAATCGTAATAAGGAAAACACGTTCATTGT
TGAGCCGAGTATTAGGGAGATAAAAGAAAGGAACGGAGTCAAACAACAAG
AAATTGAAGAGACCCACATTGAGGATATACCACGACTTGACAGAGATAAG
GAAAACACAAACCCAGAACGAGTAACTAACACAGTTAATCAACAAACNtc
atttttgcaattaagttcttaattactcttaaggggtttgattaaaaagc
aatttataaaggcaattctttgttaaaagtgttaaagaatgtAAACCATA
aattttatgttcagatactaaaatctattttctgactatggtcagagccc
ttaa Coding sequence (CDS) from alignment at scaffold_16:253535..254688 >TCONS_00049523 ID=TCONS_00049523|Name=TCONS_00049523|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_16:253535..254688 (Clytia hemisphaerica)
ATGTCTTTACAAGTTTTGCTACCGACTGGTGTAACCGAACATGTCGAATG
TTCTATCCTGCTGTCTTCACATAATCTAAAAATCAATGTCGAAAAGATTA
CAGGAATACCTTACGAACTACAAAAGATTGGATACAATGGGCGTTATTTA
GATAACAATCGATGCTTGGCGGATCAAGGCGTGCCTCCTGGGGCGGTACT
GAAGCTAGAGGTTGATATGTGGTGGAATAAACTTATTTCTCTTGCGTTAC
AAGGGAACACGACTAGCCTGGGTCGACGTGTTTCAATGCCAATGCAGCAA
ATAGGAGCTGGTAATCGAATCTTATCAACTCTGTTAATCTGTGCTACTAG
CGGTAACCCGAAAGGCATTGATAATATGCTTGTATTGCATAAAGACTTCG
ACTTGGCTTCGTCTACGAAAGTTACTGGTCGAACTATTTTACATGCCGCT
GTCTTATCAGGAAGTTTAAAATGTGTTGAAGAGATTAAAAAATATGCAGG
TTTGAAATTCGAACAGTTACTTTATTTGAAAGATAAAGCAGGTCAAACGC
CTTTAGACGGGTTATCTATAAACGATTCGCGAATGTTGAACTATGTTAAT
AAGTTTCTATCATCTCCCATAAATATGGACCAGTTGAAAAATAACGAGAA
TAGAGATAATCGTAATAAGGAAAACACGTTCATTGTTGAGCCGAGTATTA
GGGAGATAAAAGAAAGGAACGGAGTCAAACAACAAGAAATTGAAGAGACC
CACATTGAGGATATACCACGACTTGACAGAGATAAGGAAAACACAAACCC
AGAACGAGTAACTAACACAGTTAATCAACAAACNtcatttttgcaattaa
gttcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049523-exon-scaffold_16-1491911889:253535..254688 | TCONS_00049523-exon-scaffold_16-1491911889:253535..254688 | Clytia hemisphaerica | exon |
| TCONS_00049523-exon-scaffold_16-1510915933:253535..254688 | TCONS_00049523-exon-scaffold_16-1510915933:253535..254688 | Clytia hemisphaerica | exon |
| TCONS_00049523-exon-scaffold_16-1575043694:253535..254688 | TCONS_00049523-exon-scaffold_16-1575043694:253535..254688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:253535..254688 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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