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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049521 ID=TCONS_00049521|Name=TCONS_00049521|organism=Clytia hemisphaerica|type=transcript|length=1810bp
ATggtatcaaaattaaaatactaATGTGTCATTTTAatgtcattaaaata
aaaacataacaagAAGTTATATAAatatacaaaacaaaaacaaaaaaatc
taagaaaatttaattttttttagtgataacattttatgttttttatttgg
aaaaattCGTTTAATTGTTGAATTTAACCCAGAAGAAATATCTGAAAAGT
GCTTTTTTAATGCTTCTTCCAGCAGTAGTTAAACGAGTCATTTGAAAATA
TTAGCTTTCGAAGTATGATAGCTCATTTTAGTCCCCATATGGCCTCTAGT
GGCCCACGAGTCCGAAAAGAGTGAAGGTTAAAATAGTTTTTATGtagatt
tttagtttttttttgcaaacttattTTTTGCAGTTTTAATTTATGTGTAC
ATAATAGTTGTGGCCGCATTAGAACATGAAGTATTGACTCGATTCATCCA
TAGAGTttgaagcccgaagggctagattagaatctctaacctttcgcagg
caagaaaaagtgaagccatatATTTCCCATACAGAACGCATCTAGAACGc
gcatccaggagtctcgagtctagacCTTCATGCTTGGAAATCAATGGATT
CATCCcttgtcaaaataaaataaaagcaaaaatcCATAAAAACAAGTCAC
GTgccatttttcattaaaaaaacattgCAATTAACATGAATCTTTTACCA
TCCCGTACCACCGGTAGTTGACGTCGTCGAGATTTCCGACGTAATGCTTA
AACCACGTCGATTCTTACGTCGCATAATGACGATAAAGAATGCAGAACGC
CATCTTTTGTTGAGTAAGATAAACAAAACAGGATTCAAAGCTGAGTTTGT
AAAATgtaacattttgaaatatttgatgaGTAGAGGGTCGATATAACACG
TGGGACAACGATAATATTCGATGTTTAACCCGATAAAAGGTGTCCAACTC
AAAATGAAACAACCCAGAATCAGCGATAACGTTAAAGCTGCTTTTAGTTC
ACGTTTTAAGATTCGCACGCTACTAACAATACTTGACGAGCGATTACGAA
TATTTGCTACCGAGAACCGACGAACCGATGATCGGAACCAACTATATTGT
CGGTGTTGAAAACGATCACCGAGATGTTTTTCTTGATAGGTAACCATGCG
ACGGTTATTACTCATCAAAGGAGAAGCTCCATTGTCAGGTACTCGTCGGT
AACTATGCGGTGTCAGGAAAGGCGATTCTGTTCCGTTCGTTGATATGGAA
TTATCCGCTGATCCGTTACACACTGAACCAGCTCGAAGACGTGTTTTGGT
TCTCTCTAAAGACGAAAGTTCCTTAGCGTGTTTCTTAGCCACAAATCCCA
TCAACACGTAAGAGAATAACATNAACTGAACCCGCTCGAAGACGTGTTTT
GGTTCTCTCTAAAGACGAAAGTTCCTTAGCGTGTTTCTTAGCCACAAATC
CCATCAACACGTAAGAGAATAACATCATAGCGACGGGAAGGACGTACGCC
GTCATAATAATAAACAACGTAAATTCTGACGGAGCGATTATAAAAACACA
TGAAACCAACCCGAAAACGTAAATCCACATCAGGAAAACTATAATCGAAG
CTCGCCTGTTGTTCACATATTTCCGATGCCAAAACGGTTTGGATATAGCG
ATAGCTCGGTCAACAGCTACCAGTGCTAACGCGTATATAGACAGGATACT
CGGCACCATATCACAGACCAAGTAAAACATAGACTGTAGTTCGCTTTCGG
CTATCTGCGGTTGTAGCTTACACACGAATATCACAAATGTGTAAGGTACG
CTTAGACTAG Run BLAST on NCBI protein sequence of TCONS_00049521-protein >TCONS_00049521-protein ID=TCONS_00049521-protein|Name=TCONS_00049521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MLFSYVLMGFVAKKHAKELSSLERTKTRLRAGSVCNGSADNSISTNGTES
PFLTPHSYRRVPDNGASPLMSNNRRMVTYQEKHLGDRFQHRQYSWFRSSV
RRFSVANIRNRSSSIVSSVRILKRELKAALTLSLILGCFILSWTPFIGLN
IEYYRCPTCYIDPLLIKYFKMLHFTNSALNPVLFILLNKRWRSAFFIVIM
RRKNRRGLSITSEISTTSTTGGTGW Run BLAST on NCBI transcript from alignment at scaffold_16:173435..175244 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049521 ID=TCONS_00049521|Name=TCONS_00049521|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_16:173435..175244 (Clytia hemisphaerica)
CTAGTCTAAGCGTACCTTACACATTTGTGATATTCGTGTGTAAGCTACAA
CCGCAGATAGCCGAAAGCGAACTACAGTCTATGTTTTACTTGGTCTGTGA
TATGGTGCCGAGTATCCTGTCTATATACGCGTTAGCACTGGTAGCTGTTG
ACCGAGCTATCGCTATATCCAAACCGTTTTGGCATCGGAAATATGTGAAC
AACAGGCGAGCTTCGATTATAGTTTTCCTGATGTGGATTTACGTTTTCGG
GTTGGTTTCATGTGTTTTTATAATCGCTCCGTCAGAATTTACGTTGTTTA
TTATTATGACGGCGTACGTCCTTCCCGTCGCTATGATGTTATTCTCTTAC
GTGTTGATGGGATTTGTGGCTAAGAAACACGCTAAGGAACTTTCGTCTTT
AGAGAGAACCAAAACACGTCTTCGAGCGGGTTCAGTTNATGTTATTCTCT
TACGTGTTGATGGGATTTGTGGCTAAGAAACACGCTAAGGAACTTTCGTC
TTTAGAGAGAACCAAAACACGTCTTCGAGCTGGTTCAGTGTGTAACGGAT
CAGCGGATAATTCCATATCAACGAACGGAACAGAATCGCCTTTCCTGACA
CCGCATAGTTACCGACGAGTACCTGACAATGGAGCTTCTCCTTTGATGAG
TAATAACCGTCGCATGGTTACCTATCAAGAAAAACATCTCGGTGATCGTT
TTCAACACCGACAATATAGTTGGTTCCGATCATCGGTTCGTCGGTTCTCG
GTAGCAAATATTCGTAATCGCTCGTCAAGTATTGTTAGTAGCGTGCGAAT
CTTAAAACGTGAACTAAAAGCAGCTTTAACGTTATCGCTGATTCTGGGTT
GTTTCATTTTGAGTTGGACACCTTTTATCGGGTTAAACATCGAATATTAT
CGTTGTCCCACGTGTTATATCGACCCTCTACtcatcaaatatttcaaaat
gttacATTTTACAAACTCAGCTTTGAATCCTGTTTTGTTTATCTTACTCA
ACAAAAGATGGCGTTCTGCATTCTTTATCGTCATTATGCGACGTAAGAAT
CGACGTGGTTTAAGCATTACGTCGGAAATCTCGACGACGTCAACTACCGG
TGGTACGGGATGGTAAAAGATTCATGTTAATTGcaatgtttttttaatga
aaaatggcACGTGACTTGTTTTTATGgatttttgcttttattttattttg
acaagGGATGAATCCATTGATTTCCAAGCATGAAGgtctagactcgagac
tcctggatgcgCGTTCTAGATGCGTTCTGTATGGGAAATatatggcttca
ctttttcttgcctgcgaaaggttagagattctaatctagcccttcgggct
tcaaACTCTATGGATGAATCGAGTCAATACTTCATGTTCTAATGCGGCCA
CAACTATTATGTACACATAAATTAAAACTGCAAAAaataagtttgcaaaa
aaaaactaaaaatctaCATAAAAACTATTTTAACCTTCACTCTTTTCGGA
CTCGTGGGCCACTAGAGGCCATATGGGGACTAAAATGAGCTATCATACTT
CGAAAGCTAATATTTTCAAATGACTCGTTTAACTACTGCTGGAAGAAGCA
TTAAAAAAGCACTTTTCAGATATTTCTTCTGGGTTAAATTCAACAATTAA
ACGaatttttccaaataaaaaacataaaatgttatcactaaaaaaaatta
aattttcttagatttttttgtttttgttttgtatatTTATATAACTTctt
gttatgtttttattttaatgacatTAAAATGACACATtagtattttaatt
ttgataccAT Coding sequence (CDS) from alignment at scaffold_16:173435..175244 >TCONS_00049521 ID=TCONS_00049521|Name=TCONS_00049521|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_16:173435..175244 (Clytia hemisphaerica)
ATGTTATTCTCTTACGTGTTGATGGGATTTGTGGCTAAGAAACACGCTAA
GGAACTTTCGTCTTTAGAGAGAACCAAAACACGTCTTCGAGCTGGTTCAG
TGTGTAACGGATCAGCGGATAATTCCATATCAACGAACGGAACAGAATCG
CCTTTCCTGACACCGCATAGTTACCGACGAGTACCTGACAATGGAGCTTC
TCCTTTGATGAGTAATAACCGTCGCATGGTTACCTATCAAGAAAAACATC
TCGGTGATCGTTTTCAACACCGACAATATAGTTGGTTCCGATCATCGGTT
CGTCGGTTCTCGGTAGCAAATATTCGTAATCGCTCGTCAAGTATTGTTAG
TAGCGTGCGAATCTTAAAACGTGAACTAAAAGCAGCTTTAACGTTATCGC
TGATTCTGGGTTGTTTCATTTTGAGTTGGACACCTTTTATCGGGTTAAAC
ATCGAATATTATCGTTGTCCCACGTGTTATATCGACCCTCTACtcatcaa
atatttcaaaatgttacATTTTACAAACTCAGCTTTGAATCCTGTTTTGT
TTATCTTACTCAACAAAAGATGGCGTTCTGCATTCTTTATCGTCATTATG
CGACGTAAGAATCGACGTGGTTTAAGCATTACGTCGGAAATCTCGACGAC
GTCAACTACCGGTGGTACGGGATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049521-exon-scaffold_16-1491911889:173435..175244 | TCONS_00049521-exon-scaffold_16-1491911889:173435..175244 | Clytia hemisphaerica | exon |
| TCONS_00049521-exon-scaffold_16-1510915933:173435..175244 | TCONS_00049521-exon-scaffold_16-1510915933:173435..175244 | Clytia hemisphaerica | exon |
| TCONS_00049521-exon-scaffold_16-1575043694:173435..175244 | TCONS_00049521-exon-scaffold_16-1575043694:173435..175244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:173435..175244 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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