TCONS_00049520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049520
Unique NameTCONS_00049520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049520 ID=TCONS_00049520|Name=TCONS_00049520|organism=Clytia hemisphaerica|type=transcript|length=130bp
AAAGAAAAGAGCTACATTGTCTTGGGAAAGACCAACTCCTATCTCTGGAG
GTTGCACCAATGCAAAGCGAGTCCAAGTTCAATTTCCCCTCTAAGACATT
TAAAACAACCTTGACACTTGATAAACTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_16:166197..166326

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049520 ID=TCONS_00049520|Name=TCONS_00049520|organism=Clytia hemisphaerica|type=transcript|length=130bp|location=Sequence derived from alignment at scaffold_16:166197..166326 (Clytia hemisphaerica)
ATTAGTTTATCAAGTGTCAAGGTTGTTTTAAATGTCTTAGAGGGGAAATT
GAACTTGGACTCGCTTTGCATTGGTGCAACCTCCAGAGATAGGAGTTGGT
CTTTCCCAAGACAATGTAGCTCTTTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031415XLOC_031415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049520-exon-scaffold_16-1491911889:166197..166326TCONS_00049520-exon-scaffold_16-1491911889:166197..166326Clytia hemisphaericaexon
TCONS_00049520-exon-scaffold_16-1510915933:166197..166326TCONS_00049520-exon-scaffold_16-1510915933:166197..166326Clytia hemisphaericaexon
TCONS_00049520-exon-scaffold_16-1575043694:166197..166326TCONS_00049520-exon-scaffold_16-1575043694:166197..166326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:166197..166326 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top