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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049518 ID=TCONS_00049518|Name=TCONS_00049518|organism=Clytia hemisphaerica|type=transcript|length=1896bp
GTTCAGTCAGCTTTATTGAAAACCGAATAAAAGGCGCGAGCGTCTGACGT
GACACCAAAAACACCACTAAAAAGAGCAAAACAGATGATCAGGCTATTGG
TTACTACTTCAGTATTACTCATAACATTCCACCTGATTTTGATGCTAAAT
AAACAAGGATAGAGCAAAACCAGGATCGTTCCTGTGGTGTTTCCAACAAA
AGACATCAGTAAGCTGAAATGAGGTACGGCCGCAGCGATGGTTATAAACA
GCATGACGATACATAAGCGGAAAAGGAGATTCGGTGTCAGGTATTTGACA
TATTTGGTTTCGGTATCTAAAACTTTGTCGAACCCTCTCGGCAACAGAAT
CTGGTTCTCCAGAATATCGAAGACAGCAAACATTGGTACGGTGTAGAATG
ATAAGGAAAGTATAATGGCGGATATGTTGATCAGATAACCAAATAAGTTA
TACGGTAAGTTCAAAGTCATTATCTGTTCTGTATGGAAAGTGAAAGCCAG
GAAAACAATAATTCCAATCACGCATTTGAAGATGGTCACTACTGTATAGG
AGAAATCCATTAGCAGGTCGAACGATTCTGGTTCACGCATGCACCGTTCG
ATAGATGGTAAATAGGCCTGGGACGAGTATGTTACCATGACAATACCGAA
TGATATAGGAGTGATGTTAGGATTGAAACTTGGCATTATCTCACTATCCC
AGCTCGGATGATTCATCAGACTGTATCCCAAAACGAACAGGCTAATCACA
GTCGCGATGCAAACAGAAACAATACACGTCCAAGTAACTTGGTGCATTTT
ACGGACCAGAATGGTCGGTATAATGATCAAGGATAAGAGAAAGATCCACG
TTGATTCACTCATACCTGATTTTGGAAATGTGTGAGCAATGACTGTCCCT
GGCATGATCAACAACAAAACACAATGTGAAAACTGTTCAATGCAGTTAAT
TATGTGAACCATCAGACGTCCAAAACGCGGGCTGAACTCCTCGCCAATGT
CCGCGTAACTATCGCGGACGCGAACACGCTGCCCGTCGGCGGTTTCCTCA
TACAGGAGGTTGATCAACATTTTACCGGTGTAGTTACCCAGAATCCCCAC
AACGATGGTGATTAAGATGCCCCAGTATCCTCCAAGCCGGATGACAAATG
GCATTGCTAGTATACCAGTGCCGAGATTAGCATTAATCAAGTTGAATATA
GATTGGATGAGATTGGTTTTGCCATCATCCGTATCATCCACTATCCGACA
CTTCTTGGCAAGCGATTTAGCTCCGGTCTTCAACCAGATGGTCGCATTGT
TTAGTGATTTGCTATTAAAGAAGGTTGCAGACTCTGGTGATGATGGTGGT
TTGTGGTCACTGGAGGTTGAGATTGTATCAGATGGACCAGAGATACTTGG
AGCTTCATAATCCTCCTCTTGATCATTGATGAGAATCTTATGTGGTTGCA
TTTTGCCGATATCGTTCTTAAGAATTGAGAACTACTTAAGCAAATTCGTA
TATCAACCTTTATTGTAGATTTAATTGACTGGTGAAAACCTTTTCTTATA
CTGTACCACTCCTCGTTAAAAATCAATGTTTCTCTCTTGGTCAAACTGAA
CGTAGAAATACGCCCTCCACTCAAACAAATGGAAGTTTTCATCCAAAAGA
AATCCACAGCCagttttcaagtcaaaacaatTAGCAATTGTAATATGATC
TTGAACATAAAAATTAGGTATGAAACAATATTAATCTTTGCAAAAGTCAA
AGTCTATCAAATTTCCCAAGTCAGTGTAGCTCATCCACGTCCAGTGCTGT
TTGTCAATAAAGTTCTGATATGGTGAAATTTGCATGAATgataaattaaa
atattttaatctcTGGTGACTCCAGTTGTGGAAAATAAGCTCCTTT Run BLAST on NCBI protein sequence of TCONS_00049518-protein >TCONS_00049518-protein ID=TCONS_00049518-protein|Name=TCONS_00049518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MQPHKILINDQEEDYEAPSISGPSDTISTSSDHKPPSSPESATFFNSKSL
NNATIWLKTGAKSLAKKCRIVDDTDDGKTNLIQSIFNLINANLGTGILAM
PFVIRLGGYWGILITIVVGILGNYTGKMLINLLYEETADGQRVRVRDSYA
DIGEEFSPRFGRLMVHIINCIEQFSHCVLLLIMPGTVIAHTFPKSGMSES
TWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNHPS
WDSEIMPSFNPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDLLMDF
SYTVVTIFKCVIGIIVFLAFTFHTEQIMTLNLPYNLFGYLINISAIILSL
SFYTVPMFAVFDILENQILLPRGFDKVLDTETKYVKYLTPNLLFRLCIVM
LFITIAAAVPHFSLLMSFVGNTTGTILVLLYPCLFSIKIRWNVMSNTEVV
TNSLIICFALFSGVFGVTSDARAFYSVFNKAD Run BLAST on NCBI transcript from alignment at scaffold_16:138021..139916 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049518 ID=TCONS_00049518|Name=TCONS_00049518|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at scaffold_16:138021..139916 (Clytia hemisphaerica)
AAAGGAGCTTATTTTCCACAACTGGAGTCACCAgagattaaaatatttta
atttatcATTCATGCAAATTTCACCATATCAGAACTTTATTGACAAACAG
CACTGGACGTGGATGAGCTACACTGACTTGGGAAATTTGATAGACTTTGA
CTTTTGCAAAGATTAATATTGTTTCATACCTAATTTTTATGTTCAAGATC
ATATTACAATTGCTAattgttttgacttgaaaactGGCTGTGGATTTCTT
TTGGATGAAAACTTCCATTTGTTTGAGTGGAGGGCGTATTTCTACGTTCA
GTTTGACCAAGAGAGAAACATTGATTTTTAACGAGGAGTGGTACAGTATA
AGAAAAGGTTTTCACCAGTCAATTAAATCTACAATAAAGGTTGATATACG
AATTTGCTTAAGTAGTTCTCAATTCTTAAGAACGATATCGGCAAAATGCA
ACCACATAAGATTCTCATCAATGATCAAGAGGAGGATTATGAAGCTCCAA
GTATCTCTGGTCCATCTGATACAATCTCAACCTCCAGTGACCACAAACCA
CCATCATCACCAGAGTCTGCAACCTTCTTTAATAGCAAATCACTAAACAA
TGCGACCATCTGGTTGAAGACCGGAGCTAAATCGCTTGCCAAGAAGTGTC
GGATAGTGGATGATACGGATGATGGCAAAACCAATCTCATCCAATCTATA
TTCAACTTGATTAATGCTAATCTCGGCACTGGTATACTAGCAATGCCATT
TGTCATCCGGCTTGGAGGATACTGGGGCATCTTAATCACCATCGTTGTGG
GGATTCTGGGTAACTACACCGGTAAAATGTTGATCAACCTCCTGTATGAG
GAAACCGCCGACGGGCAGCGTGTTCGCGTCCGCGATAGTTACGCGGACAT
TGGCGAGGAGTTCAGCCCGCGTTTTGGACGTCTGATGGTTCACATAATTA
ACTGCATTGAACAGTTTTCACATTGTGTTTTGTTGTTGATCATGCCAGGG
ACAGTCATTGCTCACACATTTCCAAAATCAGGTATGAGTGAATCAACGTG
GATCTTTCTCTTATCCTTGATCATTATACCGACCATTCTGGTCCGTAAAA
TGCACCAAGTTACTTGGACGTGTATTGTTTCTGTTTGCATCGCGACTGTG
ATTAGCCTGTTCGTTTTGGGATACAGTCTGATGAATCATCCGAGCTGGGA
TAGTGAGATAATGCCAAGTTTCAATCCTAACATCACTCCTATATCATTCG
GTATTGTCATGGTAACATACTCGTCCCAGGCCTATTTACCATCTATCGAA
CGGTGCATGCGTGAACCAGAATCGTTCGACCTGCTAATGGATTTCTCCTA
TACAGTAGTGACCATCTTCAAATGCGTGATTGGAATTATTGTTTTCCTGG
CTTTCACTTTCCATACAGAACAGATAATGACTTTGAACTTACCGTATAAC
TTATTTGGTTATCTGATCAACATATCCGCCATTATACTTTCCTTATCATT
CTACACCGTACCAATGTTTGCTGTCTTCGATATTCTGGAGAACCAGATTC
TGTTGCCGAGAGGGTTCGACAAAGTTTTAGATACCGAAACCAAATATGTC
AAATACCTGACACCGAATCTCCTTTTCCGCTTATGTATCGTCATGCTGTT
TATAACCATCGCTGCGGCCGTACCTCATTTCAGCTTACTGATGTCTTTTG
TTGGAAACACCACAGGAACGATCCTGGTTTTGCTCTATCCTTGTTTATTT
AGCATCAAAATCAGGTGGAATGTTATGAGTAATACTGAAGTAGTAACCAA
TAGCCTGATCATCTGTTTTGCTCTTTTTAGTGGTGTTTTTGGTGTCACGT
CAGACGCTCGCGCCTTTTATTCGGTTTTCAATAAAGCTGACTGAAC Coding sequence (CDS) from alignment at scaffold_16:138021..139916 >TCONS_00049518 ID=TCONS_00049518|Name=TCONS_00049518|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_16:138021..139916 (Clytia hemisphaerica)
ATGCAACCACATAAGATTCTCATCAATGATCAAGAGGAGGATTATGAAGC
TCCAAGTATCTCTGGTCCATCTGATACAATCTCAACCTCCAGTGACCACA
AACCACCATCATCACCAGAGTCTGCAACCTTCTTTAATAGCAAATCACTA
AACAATGCGACCATCTGGTTGAAGACCGGAGCTAAATCGCTTGCCAAGAA
GTGTCGGATAGTGGATGATACGGATGATGGCAAAACCAATCTCATCCAAT
CTATATTCAACTTGATTAATGCTAATCTCGGCACTGGTATACTAGCAATG
CCATTTGTCATCCGGCTTGGAGGATACTGGGGCATCTTAATCACCATCGT
TGTGGGGATTCTGGGTAACTACACCGGTAAAATGTTGATCAACCTCCTGT
ATGAGGAAACCGCCGACGGGCAGCGTGTTCGCGTCCGCGATAGTTACGCG
GACATTGGCGAGGAGTTCAGCCCGCGTTTTGGACGTCTGATGGTTCACAT
AATTAACTGCATTGAACAGTTTTCACATTGTGTTTTGTTGTTGATCATGC
CAGGGACAGTCATTGCTCACACATTTCCAAAATCAGGTATGAGTGAATCA
ACGTGGATCTTTCTCTTATCCTTGATCATTATACCGACCATTCTGGTCCG
TAAAATGCACCAAGTTACTTGGACGTGTATTGTTTCTGTTTGCATCGCGA
CTGTGATTAGCCTGTTCGTTTTGGGATACAGTCTGATGAATCATCCGAGC
TGGGATAGTGAGATAATGCCAAGTTTCAATCCTAACATCACTCCTATATC
ATTCGGTATTGTCATGGTAACATACTCGTCCCAGGCCTATTTACCATCTA
TCGAACGGTGCATGCGTGAACCAGAATCGTTCGACCTGCTAATGGATTTC
TCCTATACAGTAGTGACCATCTTCAAATGCGTGATTGGAATTATTGTTTT
CCTGGCTTTCACTTTCCATACAGAACAGATAATGACTTTGAACTTACCGT
ATAACTTATTTGGTTATCTGATCAACATATCCGCCATTATACTTTCCTTA
TCATTCTACACCGTACCAATGTTTGCTGTCTTCGATATTCTGGAGAACCA
GATTCTGTTGCCGAGAGGGTTCGACAAAGTTTTAGATACCGAAACCAAAT
ATGTCAAATACCTGACACCGAATCTCCTTTTCCGCTTATGTATCGTCATG
CTGTTTATAACCATCGCTGCGGCCGTACCTCATTTCAGCTTACTGATGTC
TTTTGTTGGAAACACCACAGGAACGATCCTGGTTTTGCTCTATCCTTGTT
TATTTAGCATCAAAATCAGGTGGAATGTTATGAGTAATACTGAAGTAGTA
ACCAATAGCCTGATCATCTGTTTTGCTCTTTTTAGTGGTGTTTTTGGTGT
CACGTCAGACGCTCGCGCCTTTTATTCGGTTTTCAATAAAGCTGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00049518-exon-scaffold_16-1491911889:138021..139916 | TCONS_00049518-exon-scaffold_16-1491911889:138021..139916 | Clytia hemisphaerica | exon |
| TCONS_00049518-exon-scaffold_16-1510915933:138021..139916 | TCONS_00049518-exon-scaffold_16-1510915933:138021..139916 | Clytia hemisphaerica | exon |
| TCONS_00049518-exon-scaffold_16-1575043694:138021..139916 | TCONS_00049518-exon-scaffold_16-1575043694:138021..139916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:138021..139916 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
BLAST of TCONS_00049518 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 7.550e-45 Identity = 112/384 (29.17%), Postives = 198/384 (51.56%), Query Frame = -2
Query: 147 TGAKSLAKKCRIVDDTDDGKTNLIQSIFNLINANLGTGILAMPFVIRLGGYWXXXXXXXXXXXGNYTGKMLINLLYEETADGQRVRVRDSYADIGEEF-SPRF---GRLMVHIINCIEQFSHCVLLLIMPGTVIAHTFPKSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNHPSWDSEIMPSF-NPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDLLMDFSYTVVTIFKCVIGIIVFLAFTFHTEQIMTLNLPYNLFGYXXXXXXXXXXXSFYTVPMFAVFDILENQILLP--RGFDKVLDTETKYVKYLTPNLLFRLCIVMLFITIAAAVPHFSLLMSFVGNTTGTILVLLYPCLF 1277
+G+K D K ++ +N+ NA G +L +P+ I GGY G+ + I ++ YTGK+LI LYEE DG+ VRVRDSY I +PRF G +V++ IE C+L +++ G ++ ++FP +S+ +W + + +++P ++ + V+ ++ VI++ V+ Y L W E + + + PIS GI++ +Y+SQ +LPS+E M++P F +M++++ + K + ++ +L + T++++T NLP ++ + LS Y +P FA ++LE + R F + +K + L R +V+ + +A VPHF+LLM G+ TG L L P LF
Sbjct: 96 SGSKDQVGGGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPGSIRAVVNIFLVAKALLS-YPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLK--SWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLF 476
The following BLAST results are available for this feature:
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