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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049516 ID=TCONS_00049516|Name=TCONS_00049516|organism=Clytia hemisphaerica|type=transcript|length=1430bp
ACGTCATCAGGTGGTTCAAAGAtatcaagctgaaattttcgtCTGTGTCT
ACATTTGGCAATAATTTCTGATCTCTTATTCAGTAAGTACTTACTTAGAT
TGGTGCCTGtgcaccatgaaactctgagtttgaaacaaagatattgtgtc
aactctttattataataACGCTCTATTTACTTATTGAGCACTCTACGAGG
AGAAGATATGCACCCTCTACAGCAACACGCTCCTATACAGTTGAGCACTA
TTCTTCAAAAAACATACCAACAGCATCTACCAAAAACTACAAGATGCAGT
TAATCAACAAGATAGAAGCCGTCATCAAACGCATGAGGTGGAAGGCGATA
TTTTTCGAAAACGAAGCAAAGAAGAAGACCGTCCTGAAACGTACGGCTTA
AAGACACCAAACACGCCACAATCTGTTCCAGAGATGGCCGACTTCGAAAA
AGATCTCATCAATATCGTTCAAAAGCTGAAATTCACAGGAACGACCAACG
AATTCCAAAAACATCTAAAAAGCGATATCGAAAAAATCAACAACACACAC
AAACTGATCGTTCCGGCAGACAAAACTTCCAACATGTACAAACTCGAAAA
AGCTGAGTACAATACGCTGTTGACGAACTCGATAACGAAAACATACAAAA
AAGCAGACCAAAACATCAAACACACAGTGAACTCAGCAGGGAAAGACATT
ATGAAAGACCACCACATCGTTGAACGCATGACTACAAACGGTGAGAACAA
TTGTTTTATTACGCTTAAAGACCACAAAGGAAACTTTGCAAACAACCCAA
CAACGCGTTTGATCAACCCCGCGAAAAACGAGCTCGGTCGCATCAGCAAA
ATTATCCTTGAAAAGATCAACCAGAAATTACGTGTAGCACTCAACCTTAA
CCAATGGAAAAGTACGGGAGAAGTAATCGACTGGTTCAAAAACATCAATG
AAAAAGATAAATATACATTCATGATGTTTGACGTAAAAGACTTCTACCCT
TCGATCAAAGAGAAACTGTTGAAAAAGGCAATGAAATTCGCCGAGAAACA
CGTACAAATCGACCAGAAGGACAAAGAGATAATTCACCATGCCCGTAAGT
CGCTGTTGTTCAACAAAGGTGAAAGCTGGTTGAAAAAGGGAGACGAACTG
TTCGACGTTACCATGGGCGCGTACGACGGGGCCGAAATTTGTGAACTTGT
CGGTTGCTTTATCCTAGCCAACCTACCAGTAAGATACAAAAGGAGTGACA
TCGGACTTTACCGTGACGATGGACTGGGtgtacaaaaaaacaaaaacggg
CAGCAAggcgagaaaatcaagaaagacttccaaaaagtatttcaaaaata
tgatcTCGAAATAGTCATCCAATGCAACATGAAAACGGTAGACTATCTGG
ATGTAACGCTTGATTTAAACAGCGGCTGCT Run BLAST on NCBI protein sequence of TCONS_00049516-protein >TCONS_00049516-protein ID=TCONS_00049516-protein|Name=TCONS_00049516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MADFEKDLINIVQKLKFTGTTNEFQKHLKSDIEKINNTHKLIVPADKTSN
MYKLEKAEYNTLLTNSITKTYKKADQNIKHTVNSAGKDIMKDHHIVERMT
TNGENNCFITLKDHKGNFANNPTTRLINPAKNELGRISKIILEKINQKLR
VALNLNQWKSTGEVIDWFKNINEKDKYTFMMFDVKDFYPSIKEKLLKKAM
KFAEKHVQIDQKDKEIIHHARKSLLFNKGESWLKKGDELFDVTMGAYDGA
EICELVGCFILANLPVRYKRSDIGLYRDDGLGVQKNKNGQQGEKIKKDFQ
KVFQKYDLEIVIQCNMKTVDYLDVTLDLNSGC Run BLAST on NCBI transcript from alignment at scaffold_16:115257..116686 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049516 ID=TCONS_00049516|Name=TCONS_00049516|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at scaffold_16:115257..116686 (Clytia hemisphaerica)
AGCAGCCGCTGTTTAAATCAAGCGTTACATCCAGATAGTCTACCGTTTTC
ATGTTGCATTGGATGACTATTTCGAgatcatatttttgaaatactttttg
gaagtctttcttgattttctcgccTTGCTGcccgtttttgtttttttgta
caCCCAGTCCATCGTCACGGTAAAGTCCGATGTCACTCCTTTTGTATCTT
ACTGGTAGGTTGGCTAGGATAAAGCAACCGACAAGTTCACAAATTTCGGC
CCCGTCGTACGCGCCCATGGTAACGTCGAACAGTTCGTCTCCCTTTTTCA
ACCAGCTTTCACCTTTGTTGAACAACAGCGACTTACGGGCATGGTGAATT
ATCTCTTTGTCCTTCTGGTCGATTTGTACGTGTTTCTCGGCGAATTTCAT
TGCCTTTTTCAACAGTTTCTCTTTGATCGAAGGGTAGAAGTCTTTTACGT
CAAACATCATGAATGTATATTTATCTTTTTCATTGATGTTTTTGAACCAG
TCGATTACTTCTCCCGTACTTTTCCATTGGTTAAGGTTGAGTGCTACACG
TAATTTCTGGTTGATCTTTTCAAGGATAATTTTGCTGATGCGACCGAGCT
CGTTTTTCGCGGGGTTGATCAAACGCGTTGTTGGGTTGTTTGCAAAGTTT
CCTTTGTGGTCTTTAAGCGTAATAAAACAATTGTTCTCACCGTTTGTAGT
CATGCGTTCAACGATGTGGTGGTCTTTCATAATGTCTTTCCCTGCTGAGT
TCACTGTGTGTTTGATGTTTTGGTCTGCTTTTTTGTATGTTTTCGTTATC
GAGTTCGTCAACAGCGTATTGTACTCAGCTTTTTCGAGTTTGTACATGTT
GGAAGTTTTGTCTGCCGGAACGATCAGTTTGTGTGTGTTGTTGATTTTTT
CGATATCGCTTTTTAGATGTTTTTGGAATTCGTTGGTCGTTCCTGTGAAT
TTCAGCTTTTGAACGATATTGATGAGATCTTTTTCGAAGTCGGCCATCTC
TGGAACAGATTGTGGCGTGTTTGGTGTCTTTAAGCCGTACGTTTCAGGAC
GGTCTTCTTCTTTGCTTCGTTTTCGAAAAATATCGCCTTCCACCTCATGC
GTTTGATGACGGCTTCTATCTTGTTGATTAACTGCATCTTGTAGTTTTTG
GTAGATGCTGTTGGTATGTTTTTTGAAGAATAGTGCTCAACTGTATAGGA
GCGTGTTGCTGTAGAGGGTGCATATCTTCTCCTCGTAGAGTGCTCAATAA
GTAAATAGAGCGTtattataataaagagttgacacaatatctttgtttca
aactcagagtttcatggtgcaCAGGCACCAATCTAAGTAAGTACTTACTG
AATAAGAGATCAGAAATTATTGCCAAATGTAGACACAGacgaaaatttca
gcttgataTCTTTGAACCACCTGATGACGT Coding sequence (CDS) from alignment at scaffold_16:115257..116686 >TCONS_00049516 ID=TCONS_00049516|Name=TCONS_00049516|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_16:115257..116686 (Clytia hemisphaerica)
GCAGCCGCTGTTTAAATCAAGCGTTACATCCAGATAGTCTACCGTTTTCA
TGTTGCATTGGATGACTATTTCGAgatcatatttttgaaatactttttgg
aagtctttcttgattttctcgccTTGCTGcccgtttttgtttttttgtac
aCCCAGTCCATCGTCACGGTAAAGTCCGATGTCACTCCTTTTGTATCTTA
CTGGTAGGTTGGCTAGGATAAAGCAACCGACAAGTTCACAAATTTCGGCC
CCGTCGTACGCGCCCATGGTAACGTCGAACAGTTCGTCTCCCTTTTTCAA
CCAGCTTTCACCTTTGTTGAACAACAGCGACTTACGGGCATGGTGAATTA
TCTCTTTGTCCTTCTGGTCGATTTGTACGTGTTTCTCGGCGAATTTCATT
GCCTTTTTCAACAGTTTCTCTTTGATCGAAGGGTAGAAGTCTTTTACGTC
AAACATCATGAATGTATATTTATCTTTTTCATTGATGTTTTTGAACCAGT
CGATTACTTCTCCCGTACTTTTCCATTGGTTAAGGTTGAGTGCTACACGT
AATTTCTGGTTGATCTTTTCAAGGATAATTTTGCTGATGCGACCGAGCTC
GTTTTTCGCGGGGTTGATCAAACGCGTTGTTGGGTTGTTTGCAAAGTTTC
CTTTGTGGTCTTTAAGCGTAATAAAACAATTGTTCTCACCGTTTGTAGTC
ATGCGTTCAACGATGTGGTGGTCTTTCATAATGTCTTTCCCTGCTGAGTT
CACTGTGTGTTTGATGTTTTGGTCTGCTTTTTTGTATGTTTTCGTTATCG
AGTTCGTCAACAGCGTATTGTACTCAGCTTTTTCGAGTTTGTACATGTTG
GAAGTTTTGTCTGCCGGAACGATCAGTTTGTGTGTGTTGTTGATTTTTTC
GATATCGCTTTTTAGATGTTTTTGGAATTCGTTGGTCGTTCCTGTGAATT
TCAGCTTTTGAACGATATTGATGAGATCTTTTTCGAAGTCGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049516-exon-scaffold_16-1491911889:115257..116686 | TCONS_00049516-exon-scaffold_16-1491911889:115257..116686 | Clytia hemisphaerica | exon |
| TCONS_00049516-exon-scaffold_16-1510915933:115257..116686 | TCONS_00049516-exon-scaffold_16-1510915933:115257..116686 | Clytia hemisphaerica | exon |
| TCONS_00049516-exon-scaffold_16-1575043694:115257..116686 | TCONS_00049516-exon-scaffold_16-1575043694:115257..116686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:115257..116686 . |
Blast
The following BLAST results are available for this feature:
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