TCONS_00049510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049510
Unique NameTCONS_00049510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049510 ID=TCONS_00049510|Name=TCONS_00049510|organism=Clytia hemisphaerica|type=transcript|length=578bp
AAAAAACGAAACCGCAGCAGTTATGCTGTGAAAAACATCATAACTCTTTG
TTCGACAGATTTTATTATAgagtttttgagaaataaatTGGAAGTTGTTA
TTTTCTTTGTTCGTAAATATTTGTCTTTTTTACTGGAAAATGGACGGATG
GAGGACTTTCCTAGTCTTGGCATTGCTGTATCTTGGAGTATTATCGCGAC
CCTATAATGATGGTCTATCACAGCAATATCAATCGTATTTAAGGACACAA
TATCCACAATATTATGCATACCAAGCTCAACAACAGTACTTAGCACAACA
AGCAACCGAAGAACAGAAAGCACATCAAGTAGAGTCCAACCCTGCACCAA
ATATAGTAGCACAAATGACGGATCTAGAACACGACGTATCCGGTTTCCAT
GATGCTATGGCTGGTATGGCTGAAGCTATGATCGTTACTaagcaaaataa
agatggtAGCTTAACAGTGGAAGAGAAATTAGAAGATGCTGAAAACGGGA
AAAAGAAAAGTTCAGtcaataaacataaaaagaaaGCAGCCAAAAAATTA
GCATCTGAAAGACGGAGATTTGAGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00049510-protein

>TCONS_00049510-protein ID=TCONS_00049510-protein|Name=TCONS_00049510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MDGWRTFLVLALLYLGVLSRPYNDGLSQQYQSYLRTQYPQYYAYQAQQQY
LAQQATEEQKAHQVESNPAPNIVAQMTDLEHDVSGFHDAMAGMAEAMIVT
KQNKDGSLTVEEKLEDAENGKKKSSVNKHKKKAAKKLASERRRFEK
Run BLAST on NCBI

transcript from alignment at scaffold_16:300174..307211-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049510 ID=TCONS_00049510|Name=TCONS_00049510|organism=Clytia hemisphaerica|type=transcript|length=7038bp|location=Sequence derived from alignment at scaffold_16:300174..307211- (Clytia hemisphaerica)
AAAAAACGAAACCGCAGCAGTTATGCTGTGAAAAACATCATAACTCTTTG
TTCGACAGATTTTATTATAGAGTTTTTGAGAAATAAATTGGAAGTTGTTA
TTTTCTTTGTTCGTAAATATTTGTCTTTTTTACTGGAAAATGGACGGATG
GAGGACTTTCCTAGTCTTGGCATTGCTGTATCTTGGAGTATTATCGCGAC
CCTATAATGATGGTACGAATTTAATCTTTTTAGTAAATTACTAATAATTT
GACATTACTTACCTAAAAAACTTACTGACTTTTGACCCGAAACATCAAAT
GTTGCACATCCCATATCGAAATCGATCTGTACTAGTAACTTCTTTTTTTT
CTTGCACCAAAAGTCCATGGCTGTACCTTTTGGTCCCGTAGAAAATTTAG
TCCTTGCTTTTCACCTTCACTTTCGAAGTTTTATATAGATATAACCCTTT
AACTGCCAAATTTCGGCTTTCGTTAGGCTGCCTACCATCCGTATATTTTG
TTTAAACTTTTAAAACAAAAACTATTTCATGGGTGCACTAAAATAAAACC
TTAGGTTTGCAGTTTTCTTAAAACTTCTCATCCTATGGCCTTCGGACGAA
CATTTTTGACGTTAGTCTACTGCAAAAATTAAGATACCTTAAAGGAAGAA
ATTTTGGCGGAAAGAAGATTTGGCGGATTTGGCCAGAATCCGCCAAAATT
TCTTTTTTCCGCCATCCGCCAAATAAAATTCCCGCCAAATTAAACTTTTT
GAACATATGATCTCTTTTAAGGTGTTTTTGCATTTTTTTTGCTGTTTTTA
CGCCATTTTAAGGATAAATTTTTCAGCAAACGCCAAATTAAATTCCCGCA
AAATTTAGTTTTTTCGTCCATTCGCCAAATTAAATTCCCTCTAAAAAAAC
TTTTTCGGCCATCCGCCAAAATTTCTTCCTTTAAGGTAGAATTTAATTCA
AAGCAAGATTCGCAATAGTCCGATTCTATCAAATACTTCTGTTCTGAAGT
ATTTTATTATTGTTCTTAAGATTGAATTTTATAACCCTAGCGGTTTGTGT
ATTTAATTGGTCAAAGACGTGTATATTTTGTAATTTTACAGGGTGAACAA
ATTTTTAGTTTCTTATTTTCTTGACCGTGATGAGAGCAAAAAGTTTTGCG
GGCCTGACAGTGTGATTTTAGGTGCCATTTCAGGAGTAAGGCTAAAATAA
GAAAAACATACAGCACCTGACCCCGAGAGGTGAAATGTTAATCAGACCTG
AATGATGTAGATTTGCATTTTAAAAAACATTGAATGTTTTCAACGAAGTT
TCGAACTCCCAAAATCTTTTCCCAGGGGTAAGTTTCATTACTTTTGATAG
ATAAGGTAATTTTTTTGGCCCTTGAAGTTGATTCCCATTTTCGTTATAAC
CCCTAGAATGTAGGTTTGGTTTTATGGTTTTAAATCTAGTACTGTAATAC
CTTAAAATAAGAAAATTTGGCGGATTTGGCGGATTTGGCCAGAATCCGCC
AAATTAAGTTCCTGCCAAAATTTCTTTTTTTCGCCATCCGCCAAATTAAA
TTCCCGCTAAATTAAACTTTTTGAAAATATGATCTTTTTTAAGGTGTTTT
TGCATTTTTTTGCTGTTTTTACCAGCTTGATGTGTGCAAAGTTTCATAAT
CATAATGCAAGTATTTCGGCTGATATCAGCCGTTAAAGTGCCCTACCCCA
CTAGCAAATCTTTTGTACAAAATTGATAGAGACCCCCCATTAAAAGCCTG
GTACGAACCTTTTATCACCTATTCAGCCTGAAAACCATCAAAAAATATAA
ACTAGAGGTGTATAGGAAGCTAAAAAACCATGGCTCACAAAGTCCCATTC
AAGGTGGGATTTTGGCCATTTTTTCCTGGACTATTTCTGATTGGGCTGGG
GTCCCAGCAGGTCTGCTGGGACACGTGTCTCATTTCGGGTAGTATCCAAT
CAACTTCGATTCAGATTTTTGTTAGGAAAAATTAATTCAAGTTAAAATTT
TATCTCTATAAATAATAAAACAGTATGCTCTGAAACAACTTTTTATGAAG
TTGAACTATCGTTAGTGTTACAATGCTAAAAAATGAGAAACCTGCATTCT
CGGGGTCAGGTGCTGTATATACAAGTTGCTTCAAAACTGACCTTCTGACA
AAAACTTGTATCGCGAAGAGACATATCAATCAGACGACACTAAACTGACA
ATATTTACGGGACGATTACAAGAGCAATACTTACGAACGGAAATGTACAG
AAGGACGCGCAAAACGGTATGTACTTGTACTTCACTACTCATACTTCTTT
TAACAACAATAATTAAACGAAAACTTAACCTGGACCATGTTCCCGGGGGG
GGGGGGGTCACTCGATCTGAAAACGACCATACGTTCGGCCCAAAATTTGG
CTTCTAAAATCGTACCCTTACAGTGCAGTGAATTTCCATAAAAAATCATA
CCCTCACAGTGCACTTTTTCAAAATTTCTTGCCCGTAAGGGCGAAAATTT
TTGCAATTTTCCAAGAAAATGTGGAATTTTTCCTCCAAAATTGACAAATT
TTGTGCCAATTCTACCAAAAAATTGGCCTTTTATCACAATTTCCTACCCT
TACAGTGCAGTTCAGTGCAGTTTTGTAATTTCCTACCCTTACAGTGCACT
AGCTGAACTATGANTACAAGTTGCTTCAAAACTGACCTTCTGACAAAAAC
TTGTGTCGCGAAGAGACATATCAATCAGATGACACTAAACTGACGATATT
AACGGGACAATTACAAGAGCAATACTTACGAACGGAAATGTACAGAAGGA
CGCGTAAAACGGTATGTACTTCGTACTTCACTACTCATACTTCTTTTAAC
AACAATAATTAAACGAAAACCTAACCTGGACCATGTTACAGTATATGATC
CCAAATGGACTCGCGTATTATTTAGCTTACGGTTGATATAAATATCTTTT
TATCAGAAGTAGCTAATTTTCTTCTTCGTTTTTCTTCACTTTTTTGAGGA
AATTTCGAATTATTAGTGGAAAACATGGGCGCATTTAGATATCTTTCCAA
CGATACCAAATTTTTATTATATACGAAAACTGGTTAGAAAGTTTTGGTCC
AGAATAAAAACACTGCACTGCAAAAAGGTTTTTGACACAGATATATTATC
TTACTTCATTTTTTCAGAGCATCAAGAAGTAATATACCGGACGCAATCGG
AGCCACGTGATCCACGAAGTTTCAAAAGTTTCATTCAATCAACATCAAGG
GGTGCAATCCAGTTAGCGCAGAAAGCCGTCAACTCATTTTTCCCGAATCT
CGAAAACAACAAAAACAATGACCTGATTGAAGATCAATTGAACGGACTAC
GTATGAACCGAAGATCAGTAAATGAAGGAGATAAAACACAAACAAATATG
TATCAAAATTATCTCCCTTATCAAATGGCAGCAACACCCTATGCGCAATA
TTATGGAGGTTATCAACAATATCCATATTACGCTTCTAATTATTATCAAT
CACAAAATCAACCAGATTTGAGTAAAAGGATAAACATAGCGTTAAAAGAA
GCTGCGTCAAAACAAANTTCAACCAGATTTGAGTAAAAGGATAAATATAG
CGTTAAAAGAAGCTGTATCAAAACAAAATCCTGGAACACCAGCTAAAAAC
ATTAAAGAGATGAGTAAAAAATCTGAAACAACGTCAAAAGATGTTGGTGG
AAACCAGTCTATCTTACAAGAAGTTGAAAATGATACACATGGTTTCTACG
ACGCGATCGATAACACAAAGGAAGCCCTCATAACCAAATTGAAAACTGGT
GGATTGAGCATAATAGAATCATTAGAAGGGAATGTAGATAAACCTGGCAT
CGGTGCAAAGAAGAATGAAATCAAAGGAAAGAAAAAGAAGGATAAGAAAA
CTTATGAAGAAGATTATAAACGAGCACTATTAAGTCAAGGTGACTTGGAA
CAGAAATTGGTTAGCTATTTCACAGACTATATTTGTGGTAACGACTGTTA
ACGAAACAGCGCATTCGCATTCAACCAGAGCTAACCGTACATAAAACTAA
TGTTCATTTGCACAAACAACCGTCAGCTACGTGTTTATAGCACATATAAT
CATAGAAAGCTTGAGAAATACAAACTCTTTCACGGCTTTCAGACAAAGAA
TACAATAAGAACAGTGAATTCTGTTGAGCAAGAGGCCATCAGTATAAATT
AATTACATTTTTTATCTTAATTTTTTTTCAAATTATCCGTGTAAATATAT
GAAAAATAAGTTATCACAAAAGCTTCAAAATATAATCAAAATTTGTCGAA
AAATATATTCACCTCCATTATAGCTCTGCGACAGAAGGAGGATTTGAAAT
TATATAAGACCTTTCAAAATCTGAGAAAGGTTTACCATAAATAAATCAAT
CACTTACATTATCACGGCCTATCACTAACCAAACAACCTAACATGTTGAT
CAAAATATTTCTAGTGTCTCTATCTAATTTGATAACAAAATTGTTTTTAT
TTTTACTGGTTAACGGCCAACCAAATCAAACAAGACGACTTGAAGTCGAA
AATTTCGCCTAGAATTTGAACTGCGTAGGAAAAACAAGAAGTAGAGATTG
AAGCCAATTTGAAATCTACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCAGTCCCTTGTTTACTTTGTAAGAACTAATTACCGAAAGGT
ATATCACCGTCTATCGAGAGTTATTGATTTGATTCTTATAAAGTAAATGC
TTAAGAAAAATAAAAATGCTGATGTTGTGTGCCATCCCTTGTTTACTTTG
TAAGAACTAATTACCGAAAGGTATATCACCGTCTATCGAGAGTTAATGAT
TTGATTCTTATAAAGTAAATGCTTATAAGAAAAATAAAAATGCCGATGTT
GTGTGCCATTGCTTGTTTACTTTGAAAGAGCTAATTACCGAAAGGTATAT
CACCGTCTATTAAAAGTTATTGATTTGATTCTTATAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTTATACGAGCGTGTAA
TTTGTAAATTAAATTTAGTGAGTTCGTCCACCGTATCAAGCACTTTCGTT
TTCTAATTTTTTTTCCAATGACACCGCGAAAGGCTATCGTAATACTTTCG
CTATGCGAAATTAATAAGAGCTTATGAAAACTCCAATCTCGTCCCAACCA
ACCACTTTATTGAAAGAAAAGTCTCTGTTAGAAGCCAAAGTTTATAGTAT
CCTCTCATCTCATTGGTCAACGACCACAAAATCATGGTGAGTAAAATTCT
CATTTTGTTTTATCAATTTCAGGTCTATCACAGCAATATCAATCGTATTT
AAGGACACAATATCCACAATATTATGCATACCAAGCTCAACAACAGTACT
TAGCACAACAAGCAACCGAAGAACAGAAAGCACATCAAGTAGAGTCCAAC
CCTGCACCAAATATAGTAGCACAAATGACGGATCTAGAACACGACGTATC
CGGTTTCCATGATGCTATGGCTGGTATGGCTGAAGCTATGATCGTTACTA
AGCAAAATAAAGATGGTAGCTTAACAGTGGAAGAGAAATTAGAAGATGCT
GAAAACGGGAAAAAGAAAAGTTCAGTCAATAAACATAAAAAGAAAGCAGC
CAAAAAATTAGCATCTGAAAGACGGAGATTTGAGAAAG

Coding sequence (CDS) from alignment at scaffold_16:300174..307211-

>TCONS_00049510 ID=TCONS_00049510|Name=TCONS_00049510|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_16:300174..307211- (Clytia hemisphaerica)
GTCTATCACAGCAATATCAATCGTATTTAAGGACACAATATCCACAATAT
TATGCATACCAAGCTCAACAACAGTACTTAGCACAACAAGCAACCGAAGA
ACAGAAAGCACATCAAGTAGAGTCCAACCCTGCACCAAATATAGTAGCAC
AAATGACGGATCTAGAACACGACGTATCCGGTTTCCATGATGCTATGGCT
GGTATGGCTGAAGCTATGATCGTTACTAAGCAAAATAAAGATGGTAGCTT
AACAGTGGAAGAGAAATTAGAAGATGCTGAAAACGGGAAAAAGAAAAGTT
CAGTCAATAAACATAAAAAGAAAGCAGCCAAAAAATTAGCATCTGAAAGA
CGGAGATTTGAGAAAATGGACGGATGGAGGACTTTCCTAGTCTTGGCATT
GCTGTATCTTGGAGTATTATCGCGACCCTATAATGATGGTCTATCACAGC
AATATCAATCGTATTTAAGGACACAATATCCACAATATTATGCATACCAA
GCTCAACAACAGTACTTAGCACAACAAGCAACCGAAGAACAGAAAGCACA
TCAAGTAGAGTCCAACCCTGCACCAAATATAGTAGCACAAATGACGGATC
TAGAACACGACGTATCCGGTTTCCATGATGCTATGGCTGGTATGGCTGAA
GCTATGATCGTTACTAAGCAAAATAAAGATGGTAGCTTAACAGTGGAAGA
GAAATTAGAAGATGCTGAAAACGGGAAAAAGAAAAGTTCAGTCAATAAAC
ATAAAAAGAAAGCAGCCAAAAAATTAGCATCTGAAAGACGGAGATTTGAG
AAAATGGACGGATGGAGGACTTTCCTAGTCTTGGCATTGCTGTATCTTGG
AGTATTATCGCGACCCTATAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031405XLOC_031405Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049510-proteinTCONS_00049510-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049510-exon-scaffold_16-1575043694:307000..307211TCONS_00049510-exon-scaffold_16-1575043694:307000..307211Clytia hemisphaericaexon
TCONS_00049510-exon-scaffold_16-1575043694:300174..300539TCONS_00049510-exon-scaffold_16-1575043694:300174..300539Clytia hemisphaericaexon
TCONS_00049510-exon-scaffold_16-1510915933:307000..307211TCONS_00049510-exon-scaffold_16-1510915933:307000..307211Clytia hemisphaericaexon
TCONS_00049510-exon-scaffold_16-1510915933:300174..300539TCONS_00049510-exon-scaffold_16-1510915933:300174..300539Clytia hemisphaericaexon
TCONS_00049510-exon-scaffold_16-1491911889:307000..307211TCONS_00049510-exon-scaffold_16-1491911889:307000..307211Clytia hemisphaericaexon
TCONS_00049510-exon-scaffold_16-1491911889:300174..300539TCONS_00049510-exon-scaffold_16-1491911889:300174..300539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:300174..307211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.865311	2.81271	1.19747	1.38455	4.01939	5.32778	20.0249	22.3345	32.0029	19.4692	29.1251	27.4699	37.6627	31.8748	30.7368	56.7722	53.9156	56.7413	3.37276	7.05871	40.0654	38.7676	29.544	32.372	31.8972	41.7339	18.1932	11.9593	13.5527	11.1987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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