|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049508 ID=TCONS_00049508|Name=TCONS_00049508|organism=Clytia hemisphaerica|type=transcript|length=1675bpRun BLAST on NCBI protein sequence of TCONS_00049508-protein >TCONS_00049508-protein ID=TCONS_00049508-protein|Name=TCONS_00049508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp MENQENIFEYDSNDFIIRLEESAKKQDRHRSKFEEKICSKWEEAMANGAFRun BLAST on NCBI transcript from alignment at scaffold_16:201082..273569- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049508 ID=TCONS_00049508|Name=TCONS_00049508|organism=Clytia hemisphaerica|type=transcript|length=72488bp|location=Sequence derived from alignment at scaffold_16:201082..273569- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_16:201082..273569- >TCONS_00049508 ID=TCONS_00049508|Name=TCONS_00049508|organism=Clytia hemisphaerica|type=CDS|length=11451bp|location=Sequence derived from alignment at scaffold_16:201082..273569- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049508 vs. Swiss-Prot (Human)
Match: GDPP1 (GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 1.292e-56 Identity = 108/305 (35.41%), Postives = 164/305 (53.77%), Query Frame = 1
Query: 112 RSKFEEKICSKWEEAMANGAFWYTLDEVKTKEVPGKYKFVAQLNEKRFAQRRKPETATKVSMPFDPQRFNFNKVKSDEILMELKNKNRVDDANDQ----VIINVSPIMYGHVLLVPNVTACQPQVLDVSGIETAVKVCLLTVNRSFCLGFNSLCALASVNHQHFHASFIQEDLLIDQTKARCL--RDDIYVIEDYAVNGFAFQLKDSNT--EVFAQLVHSVTTWLTKNNIAHNIFMSRQRDFSYGTEKKDGFYVTLFLFPKKPCPGMKDARSLNSCCYDLAGYLLTKDAEQFDSLTEEKAVEILQ 1002
+S F+ +CS W++ + G F Y L E++T+ +PG FVAQLN +R QRR P+T V FDP +FNFNK++ E+L L + + Q V+INVSP+ +GHVLLVP PQ L + ++ LL+++ F +GFNSL LASVNH H H ++ L ++Q + L +++++D GF F + E V T +LT + IAHN+F++R + V + L+ +K G+KD + N +LAG+L K ++ F SLTE AV ++Q
Sbjct: 56 QSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFDPVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDPGGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKTSPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ 360 The following BLAST results are available for this feature:
BLAST of TCONS_00049508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.