TCONS_00049502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049502
Unique NameTCONS_00049502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049502 ID=TCONS_00049502|Name=TCONS_00049502|organism=Clytia hemisphaerica|type=transcript|length=2112bp
CTGAAATGTGAGCAAATGTTTCAACTAAAACTACCATATACAATTATCAT
TGAACCCTCCTGAGAAAGATGCCTTACGCTAGTCaaccaaaagtcaaaat
atcagAACTGAgtgatgaaaatatcaaattcacACTTGAGGATACTGATT
TGTCCATGGCAAATGGTTTGAGAAGGATCTTCATTTCAGAAGTCCCAACT
ATTGCAATTGATTGggttcaaattgaaaataatacttCAGTACTACATGA
TGAATTTATAGCCCATCGTGTTGGTTTGATTCCTTTAACATGTGATGAAT
CAGTCGAGGGGATGAGCTACTCCAGAGATTGCACATGTATTGATTTTTGC
CCTGAGTGTTCTGTAGAATTCACTCTTGAGGTCAAATGCACTGAAGATAC
AACAAGACGTATAACAAGCCGTGATTTGATATCAGCTAACCCAAAAATTG
TTCCAGTTACTTCTCAAAACAAAGATGATGATAGTGACATGCAGGAAAAT
AAcgatattattattttgaagCTTCGAAAAGGTCAAGAACTGAAATTACG
TGCTTATGCCAAAAAAGGGTTTGGTAAAGAGCATGCCAAATGGAATCCAA
CAGCTGGAGTGGCTTTTGAGTATGATCCTGATAATGTGATGAGACATACA
ACATATCCAAGACCAGAGGAATGGCCTAAAAGTGAATATTCACAACTTGA
CGAGGATCAAACACAAGGTGATTTTGATGTTGGTGCTAAACCAAACAAGT
TCTTTTTCAATGTCGAAACATCTGGGTCACTGAGACCTGAAAGAATTATC
TTGTCTGGACTttctgttttgaaaaagaaactgaGTGACTTGCAAACACA
ACACAGTCATGAAATTGCAGCTGATGTTTTAGCCATTTGATGTCTTGTTT
TTAgtttaccaaaaatcaaaattgcatGGATTTAAATAAACAATAGAGTG
CTATTGTGGCTTTGATTTTGCAATACGTTTATTCANAGAAGTCCCAACTA
TTGCAATTGATTGggttcaaattgaaaataatacttCAGTACTACATGAT
GAATTTATAGCCCATCGTGTTGGTTTGATTCCTTTAACATGTGATGAATC
AGTCGAAGGGATGAGCTACTCCAGAGATTGCACATGTATTGATTTTTGCC
CTGAGTGTTCTGTAGAATTCACTCTTGAGGTCAAATGCACTGAAGATACA
ACAAGACGTATAACAAGCCGTGATTTGATATCAGCTAACCCAAAAATTGT
TCCAGTTACTTCTCAAAACAAAGATGATGATAGTGACATGCAGGAAAATA
ACGATatcattattttgaaacttcGAAAAGGTCAAGAACTGAAATTACGT
GCTTATGCAAAAAAAGGGTTTGGTAAAGAGCATGCCAAATGGAATCCAAC
AGCTGGAGTGGCTTTTGAGTACGATCCTGATAATGTGATGAGACATACAA
CATATCCAAGACCAGAGGAATGGCCTAAAAGTGAATATTCACAACTTGAC
GAGGATCAAACACAAGGTGATTTTGATGTTGGTGCTAAACCAAACAAGTT
CTTTTTCAATGTCGAAACATCTGGGTCACTGAGACCTGAAAGAATTATCT
TGTCTGGACTttctgttttgaaaaagaaactgaGTGACTTGCAAACACAA
CACAGTCATGAAATTGCAGCTGATGTTTTAGCCATTTGATGTCTTGTTTT
TAgtttaccaaaaatcaaaattgcatGGATTTAAATAAACAATAGAGTGC
TATTGTGGCTTTGATTTTGCAATACGTTTATTCAATATTCTTAGATCTAC
AATATACGTGGGACTTTTTTCACTCAACCCAATTCAAAATTGCTTGGATA
TGAATAAACAATAGAGTATGTACTATAATGTGACTTTGATTTTGCAATAG
GCTTATTCAGTATTCTCAGATACAGAATATACAAGGGACATATCCACCAT
TGGTGTCATTGctgtttttattattattattttatttaaccACACTTTAG
ATTATACTTAAGAAGATACAACATTttttaattgataaaaaaattgattt
tgttacGAGTCATGGATACCCTAaagttttattcaaaaaaataccttttt
tgtcacttttat
Run BLAST on NCBI

protein sequence of TCONS_00049502-protein

>TCONS_00049502-protein ID=TCONS_00049502-protein|Name=TCONS_00049502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MPYASQPKVKISELSDENIKFTLEDTDLSMANGLRRIFISEVPTIAIDWV
QIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVE
FTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDDSDMQENNDIIIL
KLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPE
EWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIILSGLSV
LKKKLSDLQTQHSHEIAADVLAI
Run BLAST on NCBI

transcript from alignment at scaffold_16:99308..109673-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049502 ID=TCONS_00049502|Name=TCONS_00049502|organism=Clytia hemisphaerica|type=transcript|length=10366bp|location=Sequence derived from alignment at scaffold_16:99308..109673- (Clytia hemisphaerica)
CTGAAATGTGAGCAAATGTTTCAAGTGAAATTTCATTTCATTAGCTCAGA
CTCTGCTACCTGGCTACTGCATGGAATAGAAACACTTTCTGTTCAAACTG
TTTCATGTAAGCAGTAAGTACCAAGTGTGTGTTTTCTGCTTCTTTTAGAA
CGTGCTCTTAGGCTTTTAGCTTCAAAATACCTCAAAGGGATTCTCTTGCG
CATTTTTTTATAAAGCCGTGTTTAATCGCTGAATTTTTTTACGAGAGGTA
AACCTCTGAAAGGCCCTTGAAAATTAACCATCTAAGAAAAAATGTCCTCC
TGTAGGAAATTTTACAACGAGAATCTAGTTGTGCGCCGGGGAAAGTCAAA
AACAAATTATTTTTTCATCCATGAAGTTTTCTTTTAGGTTCTTTTAGATG
ATATAGCATAGACAGTCTAAACTTAAACTCCTATATCGGGATTATAAACT
AGGCTAATCTTACATAGCTTCAGCCCCCTTACTTTGGGGGGGGGGCTAAG
AAATATTTTGGCCTTTAAAGAGCCTGGGGGCTAAAATTACCAAAATATTT
GGGGGGACCTAGATTGTTGGGGGAAACCTAGATAATCTGACTGAGACTCT
GGGGCTGTTCAGCTAATTCTAAAAGATGGCTTATCATACTATTAAATCGA
ATATAAAAAGCAAAAGATTGGTTAACATAAATATTAATATACAAGTAAAA
TTTAAGTTTTCATTTATCAGTACCGTACTCGCATATATTTTTTATTGACT
TCTTTCTACGGGGGCGGGAGGAAAATGTTTTTGTTTTTTCCCCAAGTGTT
AGGGGACCTAGCACAAGGCAATTTTTTTGGGGAAGCTAAATTGTTGGGGG
GACTTTACTTTGTTGGGGGGAGCTAGACAGTTAGTCACACTAGCGTCCAT
CCCGCCAAAATGAGTATCAAAGATTAATGCTGCGAAAACGCTATATCGCT
TACCAGTTACATCAAAATGCCTCGAAAATGTCAATATGAAAATTGCGTAA
TCAGAGAACGTATGTCTCGCTCATTATAAAAAGGCCGAGACAAACTTTCA
ATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGCGCACCGCCGGATAGGCTATCTCCCGGAAA
TTTTGCCGGACCTCAAACAATGACCCATTTACATGTGCGGAATTGTTTTT
AATTTAGCGTATAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTGTTTCCAACTTTCAAGTTTTAATTGATA
TTGTCTTGCGAACTTGATTCAGGTAACTCTCATCCTTGTTGTTGAAATGT
ATCCTGTAGATGACTGAGGTTGTTTTTTCTGAAAGCTTAATTTCCTAGTG
TGACTAACTGCTAGAAACCTGGCTGAAGCTACGTCTTACCTCTTTTATCT
TTTCCTTTACAACATACCGTCAACTGCTCTAACTTATCGGACGATTGGTC
GAAACATGGGACTGTTGCATATCTGGTCTGGTCTGTATTTTCACTTACTG
TAAAATCGAAAGAGAAATCGTGTATTTTTAAATACGCCGTTCCTTAACTC
AAATTAAATGACTTTGGAGGTTCGGTGAAATGGTGGCCGAATTGCCGTCC
CATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACAGTACAATGCTG
ACAAGTTTACACACCACATGTGTACGTACATTGACAAGTAATCCCTGAGA
GAAGTTTTCATAGAAATCTGCAACAAAAACAAAAGTGGTCTCTTCAACAG
ATTGCTTCCCAGCGCTCCTTTGCAGCTGTTTATCAAATTTCGACCAATGA
ATCAAACGGCCCTCTTCTTTTTGGCACCCATGGCCCTTCAGTGCCTTGCA
CGTTGGACGGCTGAAAAATTCCACCCTTCATATATTTGTTTCAATCTGTA
ATCCATGGTTTAGGTTTTTTCTCATCTTCAATTTACTGAAGAAAGCGAGA
ATTTGATGCGAGAGTTAGATTGTCAAAAAAGTGCCGTAAAAAATCATTGA
ATAAAAGAAGAACTTAAAATCTTAAATATTTTCATTTTGAAGAATAGGTG
CCAAAAAAGTGAAACATAGAAAAGTTTCATTTTTCATTGCATTAATCAAA
ATGGGGGATTTGGAAAATTTTCTATGTTTAATTTTTTGCACAAATCCCTG
TACAACTATGGGCGAGCACCCCGTTGCTAAGATGTTGGCTTGAAATTGAA
AATGAAACCACTCAAAACGAAAGTAAAATCGGCCCGTACTCGAAATCCCG
TAATCCTGATATACAAGTTTAAGTCTATACCGTGAGATCGGGTAACTTGC
ATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAAAGACCTGGCTGGTC
ATTAAAATACAAAAATAAATCAAAACAAAAATGGTAGAGTACTGTAGAGC
TGCGAGCGGAGCTGCGTAGTTGTATTTTAATGACCAGCCAGGTCATTCAT
TTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCGANCAAGC
TTGAAATTTTCACTTCCCCCCTGGCACCAAAATCTGATTCCCCCCCATCT
TCCTGGGGGGGATGATCCCATGAAGGGGCCACTCACATATCGATTTTTCC
CACGCTTAACGTCATTCCAATGCTTTAGGGTAGGTGGGTTAGATCGAGTG
ACGCTAAGAAAATCTAGAGATATCGTTTTTTGAGGCCCAAGAGATGATCA
AATTTCCAGAAAACTATAACTCTTTTTTTCACGGCATCAAGAATAAACCG
GTATAGTAAAAAAATACCGGAGACACTCATTATGTTAAAAAAGTTTGGGG
CTTTTTTTTCCCGTGTCATAACTTATGCGGGTCTGGGAACCAATCTGTGT
AAAAGTCAGAAACCACTACTCGAAAAACAAGCAAAATGTACAAGGCAGAA
GGAAGAAGAAACGTCTCTGGCAGTGGAACATCAATACCAGAAGTGAGAAT
GGAAAAAAGGTTTTCATCGATTTTCGGTATATTTTATAATATGACGCTAA
GGGGTCAGTCACAAATCGATTCTAGGTTAGAAGAACGTCAATTGACGTTT
TAAAAGCTGACCCACCCACCCACACCCAAAAACGTCAAACACCTTGATAT
CCCGAAAATTGATAAAAACTGCCTTCTTTGCTGTTTCGTCAGCCATCTTG
ATTTTCACTACGGCTCGGAGATAATTTCTAAACTTGTTCACAAAATTCCC
GTAATTAATTATCTCCGTAGTATGTAGCGACAGAAAGAACGGCGATCTGC
AAAAATTCAAGGGCCGTTCGGGCCGTCAAACAAAGAAAAGACATAAACAT
CGGGCCGTTAGTTTTGGTTTTCAAAACAAAAGAAGCGATCAAACAGAAAC
ATGGCGAGAATGAAATGTTTGATGTTTCTGAAAAACGTCAACAACCTTTA
ACCCACCCACCCATATACGTCAATTGACGTTCTTCTAACTTAAAATCAAT
TTGTGACTGACCCCTAAGGGTAGGGGGTGGGTGGGTTTTTTAATTAGTGT
TGGAATGACGCTAAGCGTGGAAAAAATCGGTCCAAAAAAAATTTTCCAGC
CCCAAAATATGAGTCGGTCGATTGGTCGACATCTTAAATCATCAGAAAAA
TGCACTCTGAATATAGGCGGTCCGGCGGTGCTAAAATATCATCAGAAAAA
TGCGCTCTGAGCATAGGTTTGTTAAGGCGACAAAGAATCATTGAGCGCAC
AAGCTGCAATGTGATTATTTTACATATCACGACCGCACAAAAAGCGCTTT
TTAAAGCAAAAAATCTTTAAAAAATAAGTGAGTGAAAAATGAGTGTCTCN
AACTTTTTAAAGCAAAAAATCTATAAAAAATTGCTCGATGAGTGTCTCTA
AAAACACTCAATGATCAAAACGCTGGCTAAGCTGAATCTACAAAATTCTT
TAAATAATATCGCTAAAAATTGGACAAATTTTCCGACTTTCCAAGTAGAA
AAGGGTCAGATTTTGAAAATAGAAAGTGAGTCGGTCGGAGAACGCAAACA
CAACTTATTTGTGACCGCAGCCTAAGCATGCAATTACACATTTACCGTTT
ATTCAAATAGTAATAAGGGTGTATATAATTGCACCCTTAACAAATTCTAC
AATTTTGATAGCCATGTACCGTCAACTGCTCTAACTTGGGACTATCTGAC
AAAACATGGGATTCCTGCATTTCTCAGTTGTTATCCATAACGCATGATAT
TTATACAGGGTTTGACAAAGATCCTTCTCTAGATACCAGGGGGGTGTTTT
TAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGGTGACTGGACCGTTGCTT
TCCTTAATTCGCAGCTTTCTTGACGATAGGCATCAGAGAGTTGTGTTGAT
TGGGTAAAACATCTGAGTGGAAGCTAATCTATGCAGGGGTACCTCAAGGC
ACGATTCTTGGTCCATTGTTCTTCTTAATTTATATTAATGATCTTCCAAA
AAACCTTGAGTCAAAACCCAAGATCTTTGCCGATGATACCTCTTTATTCT
CTCTTGTGATTGATCAACTCTTGAGCCTTGATGTACTTAACAGAGATCTC
TCCAGGATAACTGATTGGGCTCATCAATGGAAGATGTCTTTTAACCCTGA
CCCATCTAAGCAAGCTGTTGACGTCTATTTTACCTGTAGACTCACTCCAG
TAATCTCCTTTAATAATTCTAATATCGCGACCATTGAGTACCAGAAACAT
CTTGGTCTAATCTTAGATTCTTTCTTTTGATCGCCATCTAAATGAGAAGA
TACAAAAGGCCAATCTGGGCCAATAAAGGAATTGGTCTTATTAACCGACT
TCGCAAGTATGTGCCTAGGAGATCTCTACCAACCATTTATAAATCTTTCA
TTAGGCCTCATCTTGATTATGGTGATATTGTATATGACTGCCCAGGAAAT
GCTACCTTTGTGCAGTAGCTTGAGTCTATTCAATATAATGCCTGTTTAGC
TATAACAGGCTGTTTTCGTGGAACGTCTCAAGAAAAACTATATTCAGAAC
TTGGTCTTGAAAGTCTTGCTGACAGGCGCTTTGCTAGAAGAATGACAACC
CTTTCTGTGGTTGCCGAACTAACTCTGTTGAAAACATTCAGCACTTTCTT
CTGCACTGCTCTATATATTCCCATGCAAGACAATCTTTGTTCGACAAACT
TCAGACCCTAGGCATTATTTTTCATCCGCCACTTAACCCTNATATTCCCA
TGCAAGACAATCTTTGTTCGACAAACTTCAGACCCTAGGCATTGTTTTTC
ATACACTTAACCCTCCTTTTTTCTGTCGGCTTTTATTATATGGGGCAGTA
TGGGGATGAAAGTTTGATTCAAATCTAAATAAATCTATTCTTTGTTCTGT
TGTTGAATTTCTTAACGAAACTGGAAGGTTTAGTGGTGCTTTATTTTAGG
CTTTTTTTACCTAACAATTGTAGCTTCCTTCTCCAAGAAGTCTAGTACCT
CTGACGATATAACGTTAGTTCCTAGCGGGGGGAGGGACTATATTTTATGT
TTAAGTAATGTTTTCTAATTTATGTTTGTAGTGTACATGTGTCTTTGTTT
CAATAAAGAAAAAAAAATGAAATTTTGAGTTAATGAACGGCGTATTAAAA
AATACACGACTTCTCTTTCGCACCGAGTAGGCTTTTAAATAGAAATATGA
AAAAAATTTGTAGTGGAACACACGCGAATGTCTGGAACGAAGAAGACCAA
ATTAGTGGCAAGTTACACACTCGCTATTTGTTAATCCCATTGAGCAATAG
GTGGTTAGGCGGCAGGCGTTCTGTAATTCTCCAATCGGCGTCCGGTCATT
TTTTGAATTCAAACAAAAAAGTTAAAAAGGGCTCGCTATCACAGTGAAAG
TTATCGTGACATGTTATTGTTATGACAGAAAGTATGATTGATAAACTTGA
TGGAGTTGTCAAAGAGATTTCACAGTAGTTGAAAATACAGGCAAGATTTC
AACCAGTCCCAAATTCGACCAATCGTCTCAAATTAGAGCAGTTGACGGTA
ATTGAGAGTTTAGATCTCAGAAGTTAAGTGTATAATTTAGAGGATTCCTA
ATCCTAGACTGATTTTGATCAGATAAAATTCAAATACTTTCAGCCTGTTT
ACACCAACCACCACATCAGTCGTTAGTNCAAATTCAATTACATTCAGCAT
GTTTCCACCAACCACCACATCAGTCGTCAGTTCTGAAAACTGATGGAAAT
TGTAAAGAATTGCAGTGCTGAAAAATTCTGCAATTTCTGCATTGTCAAAT
TCTGCAACAGTGTTAAGTTTTGGTGGTTTACAGTGGTAAGTTGGGACAGA
AATATTGTAGACAATATGCATTCCCTATCATATCAGAGGGGATGTGTGCA
GCCTACAGTAAGGCTGCTTTTTTTCAACCTGATTTTGCTTGTGTTTTGAA
AAAAATTGGTTTACATTGCAACAATCAATCTTAATTGGGAATGTTGCAAT
TTTACCAACCCAGGTACACACGATAATAACAGAGAACAGGTTTTCAAAAG
TATTCAACTACAGGACGTAAGTCTGGTTTTTGGTAAAATAGCTATTCAAA
ACTGCCAACCCTATTCATTTCAAATGTTTCAAAAACAGTTCTTGAATTTT
TTTGAATTTAGATTTCTGTAAACTATCTGCTTTTGTGAAGCTCAGAGGGT
TTTTGGGTTTATCTTAATTTGGTTTCTGGAAAAACTCTTTTAGCCTAGAA
CCTTGACCATTTTGACATTATGTTTCAGCTAAAACTACCATATACAATTA
TCATTGAACCCTCCTGAGAAAGATGCCTTACGCTAGTCAACCAAAAGTCA
AAATATCAGAACTGAGTGATGAAAATATCAAATTCACACTTGAGGATACT
GATTTGTCCATGGCAAATGGTTTGAGAAGGATCTTCATTTCAGAAGTCCC
AACTATTGCAATTGATTGGGTTCAAATTGAAAATAATACTTCAGTACTAC
ATGATGAATTTATAGCCCATCGTGTTGGTTTGATTCCTTTAACATGTGAT
GAATCAGTCGAGGGGATGAGCTACTCCAGAGATTGCACATGTATTGATTT
TTGCCCTGAGTGTTCTGTAGAATTCACTCTTGAGGTCAAATGCACTGAAG
ATACAACAAGACGTATAACAAGCCGTGATTTGATATCAGCTAACCCAAAA
ATTGTTCCAGTTACTTCTCAAAACAAAGATGATGATAGTGACATGCAGGA
AAATAACGATATTATTATTTTGAAGCTTCGAAAAGGTCAAGAACTGAAAT
TACGTGCTTATGCCAAAAAAGGGTTTGGTAAAGAGCATGCCAAATGGAAT
CCAACAGCTGGAGTGGCTTTTGAGTATGATCCTGATAATGTGATGAGACA
TACAACATATCCAAGACCAGAGGAATGGCCTAAAAGTGAATATTCACAAC
TTGACGAGGATCAAACACAAGGTGATTTTGATGTTGGTGCTAAACCAAAC
AAGTTCTTTTTCAATGTCGAAACATCTGGGTCACTGAGACCTGAAAGAAT
TATCTTGTCTGGACTTTCTGTTTTGAAAAAGAAACTGAGTGACTTGCAAA
CACAACACAGTCATGAAATTGCAGCTGATGTTTTAGCCATTTGATGTCTT
GTTTTTAGTTTACCAAAAATCAAAATTGCATGGATTTAAATAAACAATAG
AGTGCTATTGTGGCTTTGATTTTGCAATACGTTTATTCANAGAAGTCCCA
ACTATTGCAATTGATTGGGTTCAAATTGAAAATAATACTTCAGTACTACA
TGATGAATTTATAGCCCATCGTGTTGGTTTGATTCCTTTAACATGTGATG
AATCAGTCGAAGGGATGAGCTACTCCAGAGATTGCACATGTATTGATTTT
TGCCCTGAGTGTTCTGTAGAATTCACTCTTGAGGTCAAATGCACTGAAGA
TACAACAAGACGTATAACAAGCCGTGATTTGATATCAGCTAACCCAAAAA
TTGTTCCAGTTACTTCTCAAAACAAAGATGATGATAGTGACATGCAGGAA
AATAACGATATCATTATTTTGAAACTTCGAAAAGGTCAAGAACTGAAATT
ACGTGCTTATGCAAAAAAAGGGTTTGGTAAAGAGCATGCCAAATGGAATC
CAACAGCTGGAGTGGCTTTTGAGTACGATCCTGATAATGTGATGAGACAT
ACAACATATCCAAGACCAGAGGAATGGCCTAAAAGTGAATATTCACAACT
TGACGAGGATCAAACACAAGGTGATTTTGATGTTGGTGCTAAACCAAACA
AGTTCTTTTTCAATGTCGAAACATCTGGGTCACTGAGACCTGAAAGAATT
ATCTTGTCTGGACTTTCTGTTTTGAAAAAGAAACTGAGTGACTTGCAAAC
ACAACACAGTCATGAAATTGCAGCTGATGTTTTAGCCATTTGATGTCTTG
TTTTTAGTTTACCAAAAATCAAAATTGCATGGATTTAAATAAACAATAGA
GTGCTATTGTGGCTTTGATTTTGCAATACGTTTATTCAATATTCTTAGAT
CTACAATATACGTGGGACTTTTTTCACTCAACCCAATTCAAAATTGCTTG
GATATGAATAAACAATAGAGTATGTACTATAATGTGACTTTGATTTTGCA
ATAGGCTTATTCAGTATTCTCAGATACAGAATATACAAGGGACATATCCA
CCATTGGTGTCATTGCTGTTTTTATTATTATTATTTTATTTAACCACACT
TTAGATTATACTTAAGAAGATACAACATTTTTTAATTGATAAAAAAATTG
ATTTTGTTACGAGTCATGGATACCCTAAAGTTTTATTCAAAAAAATACCT
TTTTTGTCACTTTTAT

Coding sequence (CDS) from alignment at scaffold_16:99308..109673-

>TCONS_00049502 ID=TCONS_00049502|Name=TCONS_00049502|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_16:99308..109673- (Clytia hemisphaerica)
ATGCCTTACGCTAGTCAACCAAAAGTCAAAATATCAGAACTGAGTGATGA
AAATATCAAATTCACACTTGAGGATACTGATTTGTCCATGGCAAATGGTT
TGAGAAGGATCTTCATTTCAGAAGTCCCAACTATTGCAATTGATTGGGTT
CAAATTGAAAATAATACTTCAGTACTACATGATGAATTTATAGCCCATCG
TGTTGGTTTGATTCCTTTAACATGTGATGAATCAGTCGAGGGGATGAGCT
ACTCCAGAGATTGCACATGTATTGATTTTTGCCCTGAGTGTTCTGTAGAA
TTCACTCTTGAGGTCAAATGCACTGAAGATACAACAAGACGTATAACAAG
CCGTGATTTGATATCAGCTAACCCAAAAATTGTTCCAGTTACTTCTCAAA
ACAAAGATGATGATAGTGACATGCAGGAAAATAACGATATTATTATTTTG
AAGCTTCGAAAAGGTCAAGAACTGAAATTACGTGCTTATGCCAAAAAAGG
GTTTGGTAAAGAGCATGCCAAATGGAATCCAACAGCTGGAGTGGCTTTTG
AGTATGATCCTGATAATGTGATGAGACATACAACATATCCAAGACCAGAG
GAATGGCCTAAAAGTGAATATTCACAACTTGACGAGGATCAAACACAAGG
TGATTTTGATGTTGGTGCTAAACCAAACAAGTTCTTTTTCAATGTCGAAA
CATCTGGGTCACTGAGACCTGAAAGAATTATCTTGTCTGGACTTTCTGTT
TTGAAAAAGAAACTGAGTGACTTGCAAACACAACACAGTCATGAAATTGC
AGCTGATGTTTTAGCCATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031401XLOC_031401Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049502-proteinTCONS_00049502-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049502-exon-scaffold_16-1575043694:109650..109673TCONS_00049502-exon-scaffold_16-1575043694:109650..109673Clytia hemisphaericaexon
TCONS_00049502-exon-scaffold_16-1575043694:99308..101395TCONS_00049502-exon-scaffold_16-1575043694:99308..101395Clytia hemisphaericaexon
TCONS_00049502-exon-scaffold_16-1510915933:109650..109673TCONS_00049502-exon-scaffold_16-1510915933:109650..109673Clytia hemisphaericaexon
TCONS_00049502-exon-scaffold_16-1510915933:99308..101395TCONS_00049502-exon-scaffold_16-1510915933:99308..101395Clytia hemisphaericaexon
TCONS_00049502-exon-scaffold_16-1491911889:109650..109673TCONS_00049502-exon-scaffold_16-1491911889:109650..109673Clytia hemisphaericaexon
TCONS_00049502-exon-scaffold_16-1491911889:99308..101395TCONS_00049502-exon-scaffold_16-1491911889:99308..101395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:99308..109673 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.574099	0	8.75752e-06	0.000399693	1.34203e-09	2.70028e-05	0	0	0	0	0	0	0	0	0.0744031	0	0	0	0	0	0	0	0	0.4995	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR009025RBP11-like_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
Blast
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BLAST of TCONS_00049502 vs. Swiss-Prot (Human)
Match: RPB3 (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 2.608e-135
Identity = 194/274 (70.80%), Postives = 240/274 (87.59%), Query Frame = 3 
Query:   69 MPYASQPKVKISELSDENIKFTLEDTDLSMANGLRRIFISEVPTIAIDWVQIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVEFTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDD-SDMQENNDIIILKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPEEWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIIXXXXXXXXXXXXXXQTQHSHEIAADVLAI 887
            MPYA+QP V+I+EL+DEN+KF +E+TDL++AN +RR+FI+EVP IAIDWVQI+ N+SVLHDEFIAHR+GLIPL  D+ V+ + YSRDCTC +FCPECSVEFTL+V+C ED TR +TSRDLIS +P+++PVTS+N+D+D +D  E +DI+I+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGVAFEYDPDN +RHT YP+PEEWPKSEYS+LDED++Q  +D   KP +F++NVE+ GSLRPE I+LS LS LKKKLSDLQTQ SHEI +DVL I
Sbjct:    1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTI 274

HSP 2 Score: 343.584 bits (880), Expect = 3.737e-112
Identity = 171/239 (71.55%), Postives = 206/239 (86.19%), Query Frame = 1 
Query:  976 RLF-XEVPTIAIDWVQIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVEFTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDD-SDMQENNDIIILKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPEEWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIIXXXXXXXXXXXXXXQTQHSHEIAADVLAI 1686
            R+F  EVP IAIDWVQI+ N+SVLHDEFIAHR+GLIPL  D+ V+ + YSRDCTC +FCPECSVEFTL+V+C ED TR +TSRDLIS +P+++PVTS+N+D+D +D  E +DI+I+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGVAFEYDPDN +RHT YP+PEEWPKSEYS+LDED++Q  +D   KP +F++NVE+ GSLRPE I+LS LS LKKKLSDLQTQ SHEI +DVL I
Sbjct:   36 RVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTI 274
The following BLAST results are available for this feature:
BLAST of TCONS_00049502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB32.608e-13570.80DNA-directed RNA polymerase II subunit RPB3 OS=Hom... [more]
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