TCONS_00049500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049500
Unique NameTCONS_00049500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049500 ID=TCONS_00049500|Name=TCONS_00049500|organism=Clytia hemisphaerica|type=transcript|length=2629bp
tttcagcacaaattaaagtaaaaacaacaaaaatatataatttgtgCAAA
TAGATGTCTGGAGAGGCAAGGACACCACAACGTCCAGGTACCCCGCGTAA
ATGGACTGACCGTGGTGTTAATTTTTGTTTGGATGAGGCTAATGCGTCTT
ACAAATGTCTCTCAGATAACGGTTATGATAAAGACAAATcaATTGATTTC
TTAATAAAAGACACCTTATGATTTCTAAAATGGCTTCAATACTTCGACAA
AGACAGGTTTTACAGGGTCTTCTTAATAATCATCGATGTTTTTCAACCAA
TTCGATTCTGAATGCAATCAACAAACAACAATTGACAACATTGCGTAAAA
AAACTGGCTATTCTTTTACTAAATGCAATGAAGCTATGAAACTTTACGAG
AATGACATGGAGAAAGCAGAAATATGGTTACACCAGCAAGCTGAAAAAGA
AGGATGGGCCAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTGAAGGGC
TTATTGGGGTTTTGACTGAACAAAATTATATCGCACTTGTAGAGGTGGCT
TGTGAAACAGATTTTGTGGCACGTAATGAACTCTTCACTGAGCTAGTTGG
TTCAACTGCACAGTCTGTTTTGAAATTCCGACAAAAAGTCATTGAACAGA
ACATGAAGGTTTCCTCAAACCAAGAGATCACTCATCTAAGAGAAATGGTT
TTAGAGCATGATTTGAAAGAGATGAAACATCCATCGCTTGATGTGACCCT
TGAGGAGCACCTCGTTCAACTTGTAGGTAAGATCGGTGAGAATATGAAGA
TAAAACGTGCGTTAGCAATGACCACAAACCAAGAAAATATCATTGGAGTT
TCTACGCATGGTGGAAATAACACTGTAACTTCTAATGGTAGCTTGCTTGG
TAAATTTGCCGGTGTTGTGGTACTAAAACCAAAGACAACAGATGTTGATG
TGgagaatttaaagaaaattgcaCGTGATCTCTCACAGCACGTGATTGGT
ATGAATCCAATAGCTTTGCAGCCAAGTAATGATGTCTCGAAAGAAGAAAG
TTTACTTGGACAAGAATTTTTATTAAATGATAAAGTTACGGTTGCCGAAC
TTTTGAATCAAAACCAAGCAGATGTTGTTGATTTTATTCGGTATGGTTTG
ACCAGTTAATGTATAATttataattaattttaaagTGGAATTCAAGAAAA
TGCTTGTAATAGACaattagatatttttttaattattagaaaataaaata
gtaacacatgaaattgaattgttacttgaaaaaattattaCTGTTTATAA
TTATCTAACTTTAATAGTAGGGGAAATCACAAAATGTTTTTACAGTGCAA
AGTTGTCATAATTGGTAACAATATATGTATCTATTTTTTCAGAATATcaa
tgaaaaaagtcaaaaaatgagttttgtcaagaaaagaacaaaatctCCAA
AGCCAACCAACAACCGTGATGAGTCATCAGAAATCAATGTCAGCTCTTTC
ATTCCAAACCCTCCACCCTTATCGTGGTGGCGTATGGGTGGTATTTTATC
CGCTCTGTCAATCATCCCTTATGTTTACGTCATCCAGAAAAATACATTGA
ACTGGTGGCTTGTTGTTATCATATCTTTAAATCCATTGGTTCGTTATTTC
TTTCCATCACAATATGTGCCTGCACGCAATAGTTGTCCATATTGGATTTC
ACATCCTTGTTTAGCACGTTTCCTAGCAACCATTGGTGAACCTATTTTCT
TATGGGCTGAAGCGATGTGCATTGGTGTACCTTTTTGGAATGGACCAATG
GGTTGTTTAACCATTGCTGGTGAATCTATCTCATGGGTTCATTTGTTGTT
ACAAAGTGAGCTGTTTGGTAAGATTGAAGATTCAACTTGGGTTTTGGTTC
AAATTGTGGCGCTCTTTACTGGATCTGGTATTTTTACAAGGATCGTATCA
TTGCCTTTCATTGCCTACTGTTTAATTTTCCATTTACCGCGACAATTCAA
AAGAGTTTCTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACG
AGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCA
CAGCAGATTTTTTTCACTGTCTTCTTGGTGTACATGAATGAAAATGGGTT
GGATTTTGTATGGTAAGTCATGGTATAAAGTTTCTTTGTAAGAATgcatt
ttcttttctatttctttCGTCTTTATTTTGGATGATCCGAATATTTGGGT
tgcattatttttatttttttaattttgattatgAGATAAAATCAAACTTG
ATAGTTTTCAACCCTGCTATACTTTAGTTTACCATACTTCACTTTAAAAC
TTCAGTTATGACATTGTCTCTGTATATTTTTAccaccctgtgtcacagac
ccgtttggatccccgccacacggaaaaattttgccaaaatttagcctccg
gtgggaaaaacaccctacaatttcagccccactgggaaattcactttcat
ttcatccccgtttgaaattcaattaaaaatttgcacttgAAAACCATCTC
TCTGGagctgtgagaaaggggtgtatctCTGTGTCTGTTGATTCTCTGTG
ACTGTACGGGCAGCATTATGTTTAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_16:95420..99161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049500 ID=TCONS_00049500|Name=TCONS_00049500|organism=Clytia hemisphaerica|type=transcript|length=3742bp|location=Sequence derived from alignment at scaffold_16:95420..99161- (Clytia hemisphaerica)
TTTCAGCACAAATTAAAGTAAAAACAACAAAAATATATAATTTGTGCAAA
TAGATGTCTGGAGAGGCAAGGACACCACAACGTCCAGGTACCCCGCGTAA
ATGGACTGACCGTGGTGTTAATTTTTGTTTGGATGAGGCTAATGCGTCTT
ACAAATGTCTCTCAGATAACGGTTATGATAAAGACAAATGTGAGGAATAT
TTTGAAGCTTACCGCAACTGTAAGAAAGAATTCAATAAGTTGAAAGCTGA
ACGACGTCGCCAGGGGTTACCACCAATACCTCCTGCTCCTCCAAGGAATT
CAAACGAATAACAATCGAATAATTTTTCTATTCCAAATGTTTTATTGGCA
TATTTTTATGTTTTTGTTTGTTTTGTAGATAGCTTGAAATTTTCTAGCAG
ATATTAAATCATTATGATTAGTAGTTATTTTTTTTGGACTTTGTTAACTG
TGTTGACCATACACAGATACTTTCCATACATTTTTCTTTAGAATCNGATT
TTTACATGGACTTTGTTAAGTGTGTTGACCATACACAGATACTTTCCATT
AATTTTTCTTTGGAATTTTTACAGATTTTTATTAAAATCTACTCTTCTTG
AATTTATTTGTTTATTTTTAGCAATTGATTTCTTAATAAAAGACACCTTA
TGATTTCTAAAATGGCTTCAATACTTCGACAAAGACAGGTTTTACAGGGT
AAGTTTGAAGTTTTTGGGGAATCTTCACACGTTTAAAAGTAAAAAACATT
TTATCATTAATAAAAATTACTTAATAAAGACTGAGATCTAAAATACCATT
GGCATCAACATTGTTCAGATGAATGTGGGAGATTACTGCCTGGTATCCAA
CCTGATCACTGTAAGACTGCCATAGAATATTGTCAATCATTTTACAACTA
AAACTTTTCCTTTGTTTTCAAGGTCTTCTTAATAATCATCGATGTTTTTC
AACCAATTCGATTCTGAATGCAATCAACAAACAACAATTGACAACATTGC
GTAAAAAAACTGGCTATTCTTTTACTAAATGCAATGAAGCTATGAAACTT
TACGAGAATGACATGGAGAAAGCAGAAATATGGTTACACCAGCAAGCTGA
AAAAGAAGGATGGGCCAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTG
AAGGGCTTATTGGGGTTTTGACTGAACAAAATTATATCGCACTTGTAGAG
GTTTGGTTGAATTCTTCCCATTTTTATCGTTAAGAGATTTTTCTTATTCT
GAACAACAACTTTTCCAAGTTCTTTTTCCTCTTAAGAAGTTGACTCTTTT
TTTTTCGTCCCAACCTCAGATAGCTGAAGTTGATGTAGTATTATTCCAAA
TTCAAATATTTTGTAAATTTCCTTAGGTGGCTTGTGAAACAGATTTTGTG
GCACGTAATGAACTCTTCACTGAGCTAGTTGGTTCAACTGCACAGTCTGT
TTTGAAATTCCGACAAAAAGTCATTGAACAGAACATGAAGGTTTCCTCAA
ACCAAGAGATCACTCATCTAAGAGAAATGGTTTTAGAGCATGATTTGAAA
GAGATGAAACATCCATCGCTTGATGTGACCCTTGAGGAGCACCTCGTTCA
ACTTGTAGGTAAGATCGGTGAGAATATGAAGATAAAACGTGCGTTAGCAA
TGACCACAAACCAAGAAAATATCATTGGAGTTTCTACGCATGGTGGAAAT
AACACTGTAACTTCTAATGGTAGCTTGCTTGGTAAATTTGCCGGTGTTGT
GGTACTAAAACCAAAGACAACAGATGTTGATGTGGAGAATTTAAAGAAAA
TTGCACGTGATCTCTCACAGCACGTGATTGGTATGAATCCAATAGCTTTG
CAGCCAAGTAATGATGTCTCGAAAGAAGAAAGTTTACTTGGACAAGAATT
TTTATTAAATGATAAAGTTACGGTTGCCGAACTTTTGAATCAAAACCAAG
CAGATGTTGTTGATTTTATTCGGTATGGTTTGACCAGTTAATGTATAATT
TATAATTAATTTTAAAGTGGAATTCAAGAAAATGCTTGTAATAGACAATT
AGATATTTTTTTAATTATTAGAAAATAAAATAGTAACACATGAAATTGAA
TTGTTACTTGAAAAAATTATTACTGTTTATAATTATCTAACTTTAATAGT
AGGGGAAATCACAAAATGTTTTTACAGTGCAAAGTTGTCATAATTGGTAA
CAATATATGTATCTATTTTTTCAGAATATCAATGAAAAAAGTCAAAAAAT
GAGTTTTGTCAAGAAAAGAACAAAATCTCCAAAGCCAACCAACAACCGTG
ATGAGTCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACCC
TTATCGTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCCC
TTATGTTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTA
TCATATCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGTG
CCTGCACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCACG
TTTCCTAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGT
GCATTGGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGCT
GGTGAATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTGG
TAAGATTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTTA
CTGGATCTGGTATTTTTACAAGGTAACATTCTTTTAGGTTGTTGTTGGAA
TCTCAAATTGTTCTGATACGCCAGGGACTTGTCCCTTAAAAAGACAAGGA
TTTTTATATTCACTCCTATCAAAACATCATTCACTCGACTAAAAACATTT
TTGAACCATTCCCAGATAAGAAAAAAGGCAATATTTCTTCTACACAGGCA
AGATAATTGTTTTGTCGTATAAATATATCATTTTACATATAAAATTTCTG
GTCCTTTCCAACGATAGATACAAGGGGGGTTTTACAATTTCCTATTTTTT
CAGGATCGTATCATTGCCTTTCATTGCCTACTGTTTAATTTTCCATTTAC
CGCGACAATTCAAAAGAGTTTCTGGTGTCAAATTTTGTGCTGGTTGGTCA
GGGTCCAAGAACGAGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCC
CAGTCTAATTGCACAGCAGATTTTTTTCACTGTCTTCTTGGTGTACATGA
ATGAAAATGGGTTGGATTTTGTATGGTAAGTCATGGTATAAAGTTTCTTT
GTAAGAATGCATTTTCTTTTCTATTTCTTTCGTCTTTATTTTGGATGATC
CGAATATTTGGGTTGCATTATTTTTATTTTTTTAATTTTGATTATGAGAT
AAAATCAAACTTGATAGTTTTCAACCCTGCTATACTTTAGTTTACCATAC
TTCACTTTAAAACTTCAGTTATGACATTGTCTCTGTATATTTTTACCACC
CTGTGTCACAGACCCGTTTGGATCCCCGCCACACGGAAAAATTTTGCCAA
AATTTAGCCTCCGGTGGGAAAAACACCCTACAATTTCAGCCCCACTGGGA
AATTCACTTTCATTTCATCCCCGTTTGAAATTCAATTAAAAATTTGCACT
TGAAAACCATCTCTCTGGAGCTGTGAGAAAGGGGTGTATCTCTGTGTCTG
TTGATTCTCTGTGACTGTACGGGCAGCATTATGTTTAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031400XLOC_031400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049500-exon-scaffold_16-1575043694:98973..99161TCONS_00049500-exon-scaffold_16-1575043694:98973..99161Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1575043694:98464..98540TCONS_00049500-exon-scaffold_16-1575043694:98464..98540Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1575043694:97962..98239TCONS_00049500-exon-scaffold_16-1575043694:97962..98239Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1575043694:96390..97785TCONS_00049500-exon-scaffold_16-1575043694:96390..97785Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1575043694:95420..96108TCONS_00049500-exon-scaffold_16-1575043694:95420..96108Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1510915933:98973..99161TCONS_00049500-exon-scaffold_16-1510915933:98973..99161Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1510915933:98464..98540TCONS_00049500-exon-scaffold_16-1510915933:98464..98540Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1510915933:97962..98239TCONS_00049500-exon-scaffold_16-1510915933:97962..98239Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1510915933:96390..97785TCONS_00049500-exon-scaffold_16-1510915933:96390..97785Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1510915933:95420..96108TCONS_00049500-exon-scaffold_16-1510915933:95420..96108Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1491911889:98973..99161TCONS_00049500-exon-scaffold_16-1491911889:98973..99161Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1491911889:98464..98540TCONS_00049500-exon-scaffold_16-1491911889:98464..98540Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1491911889:97962..98239TCONS_00049500-exon-scaffold_16-1491911889:97962..98239Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1491911889:96390..97785TCONS_00049500-exon-scaffold_16-1491911889:96390..97785Clytia hemisphaericaexon
TCONS_00049500-exon-scaffold_16-1491911889:95420..96108TCONS_00049500-exon-scaffold_16-1491911889:95420..96108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:95420..99161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.0616	32.2823	13.6969	13.0386	5.39214	3.77325	6.02574	5.87706	7.59378	9.46355	8.315	5.69729	5.9977	4.15018	12.1829	9.92447	18.6222	15.3655	3.49881	4.07317	8.26627	8.61676	24.6844	23.2485	7.97655	6.96733	9.1452	7.57393	20.4134	17.5893
Blast
[Close]
BLAST of TCONS_00049500 vs. Swiss-Prot (Human)
Match: EFTS (Elongation factor Ts, mitochondrial OS=Homo sapiens GN=TSFM PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.025e-50
Identity = 103/285 (36.14%), Postives = 160/285 (56.14%), Query Frame = 2 
Query:  311 NAINKQQLTTLRKKTGYSFTKCNEAMKLYENDMEKAEIWLHQQAEKEGWAKAKKLQSRSTSEGLIGVLTEQNYIALVEVACETDFVARNELFTELVGSTAQSVLKFRQKVIEQNMKVS----SNQEITHLREMVLEHDLKEMKHPSLDVTLEEHLVQLVGKIGENMKIKRALAMTTNQENIIGVSTHGGNNTVTSNGSLLGKFAGVVVLKPKTTDVDVENLKKIARDLSQHVIGMNPIALQPSNDVSKEES---LLGQEFLLNDKVTVAELLNQNQADVVDFIRY 1144
            +A +K+ L  LR+KTGYSF  C +A++    D+++AEIWLH++A+KEGW+KA KLQ R T EGLIG+L E N   LVEV CETDFV+RN  F  LV   A   +   Q + +Q    S    ++ E++ L              P  + +L++ L   +GK+GENM +KRA  +       +G   HG   + + +  +LGK+  +V+ +   T     NL+ + R L QHV+GM P+++   +D    E+   +L Q +LL+  +T+ + +      VVDF+R+
Sbjct:   43 SASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPA-----------GPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVICE---TSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 313
The following BLAST results are available for this feature:
BLAST of TCONS_00049500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFTS1.025e-5036.14Elongation factor Ts, mitochondrial OS=Homo sapien... [more]
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