TCONS_00049499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049499
Unique NameTCONS_00049499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049499 ID=TCONS_00049499|Name=TCONS_00049499|organism=Clytia hemisphaerica|type=transcript|length=3409bp
tttcagcacaaattaaagtaaaaacaacaaaaatatataatttgtgCAAA
TAGATGTCTGGAGAGGCAAGGACACCACAACGTCCAGGTACCCCGCGTAA
ATGGACTGACCGTGGTGTTAATTTTTGTTTGGATGAGGCTAATGCGTCTT
ACAAATGTCTCTCAGATAACGGTTATGATAAAGACAAATcaATTGATTTC
TTAATAAAAGACACCTTATGATTTCTAAAATGGCTTCAATACTTCGACAA
AGACAGGTTTTACAGGGTCTTCTTAATAATCATCGATGTTTTTCAACCAA
TTCGATTCTGAATGCAATCAACAAACAACAATTGACAACATTGCGTAAAA
AAACTGGCTATTCTTTTACTAAATGCAATGAAGCTATGAAACTTTACGAG
AATGACATGGAGAAAGCAGAAATATGGTTACACCAGCAAGCTGAAAAAGA
AGGATGGGCCAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTGAAGGGC
TTATTGGGGTTTTGACTGAACAAAATTATATCGCACTTGTAGAGGTGGCT
TGTGAAACAGATTTTGTGGCACGTAATGAACTCTTCACTGAGCTAGTTGG
TTCAACTGCACAGTCTGTTTTGAAATTCCGACAAAAAGTCATTGAACAGA
ACATGAAGGTTTCCTCAAACCAAGAGATCACTCATCTAAGAGAAATGGTT
TTAGAGCATGATTTGAAAGAGATGAAACATCCATCGCTTGATGTGACCCT
TGAGGAGCACCTCGTTCAACTTGTAGGTAAGATCGGTGAGAATATGAAGA
TAAAACGTGCGTTAGCAATGACCACAAACCAAGAAAATATCATTGGAGTT
TCTACGCATGGTGGAAATAACACTGTAACTTCTAATGGTAGCTTGCTTGG
TAAATTTGCCGGTGTTGTGGTACTAAAACCAAAGACAACAGATGTTGATG
TGgagaatttaaagaaaattgcaCGTGATCTCTCACAGCACGTGATTGGT
ATGAATCCAATAGCTTTGCAGCCAAGTAATGATGTCTCGAAAGAAGAAAG
TTTACTTGGACAAGAATTTTTATTAAATGATAAAGTTACGGTTGCCGAAC
TTTTGAATCAAAACCAAGCAGATGTTGTTGATTTTATTCGGTATGGTTTG
ACCAGTTAATGTATAATttataattaattttaaagTGGAATTCAAGAAAA
TGCTTGTAATAGACaattagatatttttttaattattagaaaataaaata
gtaacacatgaaattgaattgttacttgaaaaaattattaCTGTTTATAA
TTATCTAACTTTAATAGTAGGGGAAATCACAAAATGTTTTTACAGTGCAA
AGTTGTCATAATTGGTAACAATATATGTATCTATTTTTTCAGAATATcaa
tgaaaaaagtcaaaaaatgagttttgtcaagaaaagaacaaaatctCCAA
AGCCAACCAACAACCGTGATGAGTCATCAGAAATCAATGTCAGCTCTTTC
ATTCCAAACCCTCCACCCTTATCGTGGTGGCGTATGGGTGGTATTTTATC
CGCTCTGTCAATCATCCCTTATGTTTACGTCATCCAGAAAAATACATTGA
ACTGGTGGCTTGTTGTTATCATATCTTTAAATCCATTGGTTCGTTATTTC
TTTCCATCACAATATGTGCCTGCACGCAATAGTTGTCCATATTGGATTTC
ACATCCTTGTTTAGCACGTTTCCTAGCAACCATTGGTGAACCTATTTTCT
TATGGGCTGAAGCGATGTGCATTGGTGTACCTTTTTGGAATGGACCAATG
GGTTGTTTAACCATTGCTGGTGAATCTATCTCATGGGTTCATTTGTTGTT
ACAAAGTGAGCTGTTTGGTAAGATTGAAGATTCAACTTGGGTTTTGGTTC
AAATTGTGGCGCTCTTTACTGGATCTGGTATTTTTACAAGGATCGTATCA
TTGCCTTTCATTGCCTACAATTTAATTTTCCATTTACCGCGACAATTCAA
AAGAGTTTTTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACG
AGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCA
CAGCAGATTTTGTTCACCGTTTTCTTGGTGTACATGAATCAAAATGGGTT
GGATTTTGTATGGTAAGTCATGGTACAAAGTTTCTTTGTAAGAATGCATT
TTCTTTTGGTTTCTTTCGTTTTTTTCCGTCTTTATGTTAGCTGATGTATA
TCGTTTATATtattttaagacttttaaatttgattaCGAGATAATTCAAa
ttaggcttttccagaaatagaccgtgcccccccccccccctgttgaggat
atcagaTATctagggggttaacgatttctGTTCAAAAGTAGATATCCAgg
gggggttaaatatctataAGGGAGccgatatccagggggtaaagtgtctt
ttcaagtaaaaaatacgatatccaggggtaagcatctttataagagagga
tatccaggatGTTGAGCATATTgataagagtggatatccagggggttcga
tacttcaaaaaatcaatatcctcagcagtgggggtaaaatatttttctgg
aaaagcccatttcaaGATTTTATACTTTACTACACTTTTAGTTTACCACA
CTTCACTTTAAAACTTATGTTATGAGATATAATCTGACATTGTCTCTGTT
CATCTTAGCACCCATGTGTTGCAGACTCGATGGGATCTCTGTCCCACTcg
aaattttcagttttcagtGGGAAAAACATCCTACACTTTCAGCCCCACTG
TGAAATTGACTTTCGTTGCATccctatttgaaattcaatcaGAAATTTGC
ACTTGAAAACCATcctcattggatttttttaacttggaagaaaagaattt
ctatccccttgGGGATTTCGATGGAAATTTTATTCCCCGCTGTGGGAAAA
AGCTCCACTGGGGCTGCGAACAGGGTTAGTATCTTATTATTCGATTCTCT
GTGACTGTTGGGGTAAGCATTATGTAATTAATTTTCGGGGGGAAGAGGTA
TTGTTAAAGAGctctgaaatttattttttatattaattttttattaattt
tagtCCATGAGACTAAAATTTGTTATTATCTATCTATGCAAAACACAATT
AATATATGCACTTAGGTTATTATTATTCCATTATATCGATTTTTTATgcg
tattttttgaaattacagGATGATTTttatagtgaatttttttaaataat
tttttagcttttatACATTTTAAACGGTTATTTTTTTAGTGGCTGCTCTC
TAGGCTGCACATTATTgtctctgatatgttttgatatatggGATGCTATC
CTTGTATAAAATTCCCTTCTGAAAGGTACCCCGTGTCTTTGTGTTTTGAG
TGGCTAGAG
Run BLAST on NCBI

protein sequence of TCONS_00049499-protein

>TCONS_00049499-protein ID=TCONS_00049499-protein|Name=TCONS_00049499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MISKMASILRQRQVLQGLLNNHRCFSTNSILNAINKQQLTTLRKKTGYSF
TKCNEAMKLYENDMEKAEIWLHQQAEKEGWAKAKKLQSRSTSEGLIGVLT
EQNYIALVEVACETDFVARNELFTELVGSTAQSVLKFRQKVIEQNMKVSS
NQEITHLREMVLEHDLKEMKHPSLDVTLEEHLVQLVGKIGENMKIKRALA
MTTNQENIIGVSTHGGNNTVTSNGSLLGKFAGVVVLKPKTTDVDVENLKK
IARDLSQHVIGMNPIALQPSNDVSKEESLLGQEFLLNDKVTVAELLNQNQ
ADVVDFIRYGLTS
Run BLAST on NCBI

transcript from alignment at scaffold_16:91961..99161-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049499 ID=TCONS_00049499|Name=TCONS_00049499|organism=Clytia hemisphaerica|type=transcript|length=7201bp|location=Sequence derived from alignment at scaffold_16:91961..99161- (Clytia hemisphaerica)
TTTCAGCACAAATTAAAGTAAAAACAACAAAAATATATAATTTGTGCAAA
TAGATGTCTGGAGAGGCAAGGACACCACAACGTCCAGGTACCCCGCGTAA
ATGGACTGACCGTGGTGTTAATTTTTGTTTGGATGAGGCTAATGCGTCTT
ACAAATGTCTCTCAGATAACGGTTATGATAAAGACAAATGTGAGGAATAT
TTTGAAGCTTACCGCAACTGTAAGAAAGAATTCAATAAGTTGAAAGCTGA
ACGACGTCGCCAGGGGTTACCACCAATACCTCCTGCTCCTCCAAGGAATT
CAAACGAATAACAATCGAATAATTTTTCTATTCCAAATGTTTTATTGGCA
TATTTTTATGTTTTTGTTTGTTTTGTAGATAGCTTGAAATTTTCTAGCAG
ATATTAAATCATTATGATTAGTAGTTATTTTTTTTGGACTTTGTTAACTG
TGTTGACCATACACAGATACTTTCCATACATTTTTCTTTAGAATCNGATT
TTTACATGGACTTTGTTAAGTGTGTTGACCATACACAGATACTTTCCATT
AATTTTTCTTTGGAATTTTTACAGATTTTTATTAAAATCTACTCTTCTTG
AATTTATTTGTTTATTTTTAGCAATTGATTTCTTAATAAAAGACACCTTA
TGATTTCTAAAATGGCTTCAATACTTCGACAAAGACAGGTTTTACAGGGT
AAGTTTGAAGTTTTTGGGGAATCTTCACACGTTTAAAAGTAAAAAACATT
TTATCATTAATAAAAATTACTTAATAAAGACTGAGATCTAAAATACCATT
GGCATCAACATTGTTCAGATGAATGTGGGAGATTACTGCCTGGTATCCAA
CCTGATCACTGTAAGACTGCCATAGAATATTGTCAATCATTTTACAACTA
AAACTTTTCCTTTGTTTTCAAGGTCTTCTTAATAATCATCGATGTTTTTC
AACCAATTCGATTCTGAATGCAATCAACAAACAACAATTGACAACATTGC
GTAAAAAAACTGGCTATTCTTTTACTAAATGCAATGAAGCTATGAAACTT
TACGAGAATGACATGGAGAAAGCAGAAATATGGTTACACCAGCAAGCTGA
AAAAGAAGGATGGGCCAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTG
AAGGGCTTATTGGGGTTTTGACTGAACAAAATTATATCGCACTTGTAGAG
GTTTGGTTGAATTCTTCCCATTTTTATCGTTAAGAGATTTTTCTTATTCT
GAACAACAACTTTTCCAAGTTCTTTTTCCTCTTAAGAAGTTGACTCTTTT
TTTTTCGTCCCAACCTCAGATAGCTGAAGTTGATGTAGTATTATTCCAAA
TTCAAATATTTTGTAAATTTCCTTAGGTGGCTTGTGAAACAGATTTTGTG
GCACGTAATGAACTCTTCACTGAGCTAGTTGGTTCAACTGCACAGTCTGT
TTTGAAATTCCGACAAAAAGTCATTGAACAGAACATGAAGGTTTCCTCAA
ACCAAGAGATCACTCATCTAAGAGAAATGGTTTTAGAGCATGATTTGAAA
GAGATGAAACATCCATCGCTTGATGTGACCCTTGAGGAGCACCTCGTTCA
ACTTGTAGGTAAGATCGGTGAGAATATGAAGATAAAACGTGCGTTAGCAA
TGACCACAAACCAAGAAAATATCATTGGAGTTTCTACGCATGGTGGAAAT
AACACTGTAACTTCTAATGGTAGCTTGCTTGGTAAATTTGCCGGTGTTGT
GGTACTAAAACCAAAGACAACAGATGTTGATGTGGAGAATTTAAAGAAAA
TTGCACGTGATCTCTCACAGCACGTGATTGGTATGAATCCAATAGCTTTG
CAGCCAAGTAATGATGTCTCGAAAGAAGAAAGTTTACTTGGACAAGAATT
TTTATTAAATGATAAAGTTACGGTTGCCGAACTTTTGAATCAAAACCAAG
CAGATGTTGTTGATTTTATTCGGTATGGTTTGACCAGTTAATGTATAATT
TATAATTAATTTTAAAGTGGAATTCAAGAAAATGCTTGTAATAGACAATT
AGATATTTTTTTAATTATTAGAAAATAAAATAGTAACACATGAAATTGAA
TTGTTACTTGAAAAAATTATTACTGTTTATAATTATCTAACTTTAATAGT
AGGGGAAATCACAAAATGTTTTTACAGTGCAAAGTTGTCATAATTGGTAA
CAATATATGTATCTATTTTTTCAGAATATCAATGAAAAAAGTCAAAAAAT
GAGTTTTGTCAAGAAAAGAACAAAATCTCCAAAGCCAACCAACAACCGTG
ATGAGTCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACCC
TTATCGTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCCC
TTATGTTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTA
TCATATCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGTG
CCTGCACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCACG
TTTCCTAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGT
GCATTGGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGCT
GGTGAATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTGG
TAAGATTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTTA
CTGGATCTGGTATTTTTACAAGGTAACATTCTTTTAGGTTGTTGTTGGAA
TCTCAAATTGTTCTGATACGCCAGGGACTTGTCCCTTAAAAAGACAAGGA
TTTTTATATTCACTCCTATCAAAACATCATTCACTCGACTAAAAACATTT
TTGAACCATTCCCAGATAAGAAAAAAGGCAATATTTCTTCTACACAGGCA
AGATAATTGTTTTGTCGTATAAATATATCATTTTACATATAAAATTTCTG
GTCCTTTCCAACGATAGATACAAGGGGGGTTTTACAATTTCCTATTTTTT
CAGGATCGTATCATTGCCTTTCATTGCCTACTGTTTAATTTTCCATTTAC
CGCGACAATTCAAAAGAGTTTCTGGTGTCAAATTTTGTGCTGGTTGGTCA
GGGTCCAAGAACGAGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCC
CAGTCTAATTGCACAGCAGATTTTTTTCACTGTCTTCTTGGTGTACATGA
ATGAAAATGGGTTGGATTTTGTATGGTAAGTCATGGTATAAAGTTTCTTT
GTAAGAATGCATTTTCTTTTCTATTTCTTTCGTCTTTATTTTGGATGATC
CGAATATTTGGGTTGCATTATTTTTATTTTTTTAATTTTGATTATGAGAT
AAAATCAAACTTGATAGTTTTCAACCCTGCTATACTTTAGTTTACCATAC
TTCACTTTAAAACTTCAGTTATGACATTGTCTCTGTATATTTTTACCACC
CTGTGTCACAGACCCGTTTGGATCCCCGCCACACGGAAAAATTTTGCCAA
AATTTAGCCTCCGGTGGGAAAAACACCCTACAATTTCAGCCCCACTGGGA
AATTCACTTTCATTTCATCCCCGTTTGAAATTCAATTAAAAATTTGCACT
TGAAAACCATCTCTCTGGAGCTGTGAGAAAGGGGTGTATCTCTGTGTCTG
TTGATTCTCTGTGACTGTACGGGCAGCATTATGTTTAGCTTAAATTAAAA
ATGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGGTGGAGGATATATTA
TTTTTTTCATGAATTACCCCTGGACATTTTGATTTTTAACCCCCTGGACA
CGGGTTATACCCCTGGACAAACATCAAATCCCGTGGACACAAAAAATTAC
CCCTGGACATTGCAATTTTTTGGTATTTTTTCAATACTCCTGGACAATTC
ATCCTCCACCCCCCATGAATGGATTTTTTCTGGAAGAGCCCAATGTACAC
TTGCTACTTATATAATTGATCTCCAGGGGGGGAGGCATTTTTAAAGAATT
CTGAAATCGATATTTATATAATTTTATAATCATGGACTAGAATATGCTAT
TATTATGTATATACAAAACACAATTAATATATGCACTTGAGTTTTGTTGT
TGTATTATTTCATATTGAATTTTTATGCGTCTTTTTGAAATTAATGGATT
TTTTTATAGTGAATTTTTAAAGAGAATTTTATAGCTTTTATACCTTTTGA
ACGGCTATTTTACTGCCGGCGCTTTTCCTTTTCCATGTTAGATGAGTTAA
ACTTCTAAAACTTCCGAATGTAAAACTGGGAATCGGAGAAATGTTAATTT
TGCTAATTTTTACTCTCCTTTTTGTTTGGCTAACTCGAATTTTGGGTTCT
TTTCACGAGACTTATCATTTACCAATGGTCAAGGTACCTTTTATATTTGA
TTATGTTTCTTTAGGTAAAGCTAAAAGCGTAAACAAAAAATAAAATACAC
AGGTACTTTGAATTGCAAATTGAACTTTTGAAATTTTGAAACTTTTGAAT
TAAAACCAAGCAGATGTTGTTGATTTCATTCGGTAGAATATGATTGACCA
ACTTGGTTGTGTAAAAAATTAACTCGAACATTTAAGGTGTACCTTAAAAA
ACCGAGTTATGAAACTCGAAAATTTAAGGTGCACGTCATAAATAATCGAG
TTTCTTATACTGGAAAATTTAAGGTGCACCTAAAATGACCGAGTTAAAAT
TAACTCCGAAAATTATAAAGGTGCACCTTAAATAAACCGAGTTATGGCTT
CATAACTCGGGTTTTCATAACTCGATAATTATTACTGTTACTTCAAAAAA
TGTTTTTACAGTGCAAAGTTGTCATAATTGGTAACAATATTATGTATCTA
TTTTTTCAGAAAAATATCAATGAAAAAAGTTAAAAAATGAGTTCTGTCAA
GAAAAGAACAAAATCTCCAAAGCCAATCAACAACCATGATGAGTCATCAG
AAATCAATGTCAGCTCTTTCATTCCAAACCCTCCGCCCTTATCGTGGTGG
CGCATGGGTGGTATTTTATCCGCTCTGTCAATCATCCCTTATGTTTACGT
CATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTATCATATCTTTAA
ATCCATTGGTTCGTTATTTCTTCCCATCACAATATGTGCCTGCACGCAAT
AGTCGTCCATATTGGATTTCACATCCTTGTTTAGCACGTTTCCTAGCAAC
CATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGTGCATTGGTGTAC
CTTTTTGGAATGGACCAATGGGTTGGTTAACCATTGCTGGTGAATCTATC
TCATGGGTTCATTTGTTGTTACAAAGTGAGCTGATTGGTGTGATTGAAGA
TTCAACTTGGGTTTTGGTTCAAATTGCGGCACTCTTTACTGGATCTGGTA
TTTTTACAAGGTAATTTCTTTTAGATTGTTGTCAGAATCTCATATTGTTC
TGATACGCTGATACATGTCCATAAACCACTTCTGGACAAGAAAAGTGCTA
ATTTCTTCCCTACACATACAAAACAACTGTTTTTGTCGTATAATCATATC
CCTTTACTCAAAATTTCTGGTTCTTTCCAACCATAGATATAAGGGACAAT
AGTGTTTGAGATATTTGACCATTTGAAGTTTCCTCATCCGAAAAGAAGAT
ACTAGTTGTTTTATCATTTCCTATTTTTTCAGGATCGTATCATTGCCTTT
CATTGCCTACAATTTAATTTTCCATTTACCGCGACAATTCAAAAGAGTTT
TTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACGAGCCTGTG
GATGCAGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCACAGCAGAT
TTTGTTCACCGTTTTCTTGGTGTACATGAATCAAAATGGGTTGGATTTTG
TATGGTAAGTCATGGTACAAAGTTTCTTTGTAAGAATGCATTTTCTTTTG
GTTTCTTTCGTTTTTTTCCGTCTTTATGTTAGCTGATGTATATCGTTTAT
ATTATTTTAAGACTTTTAAATTTGATTACGAGATAATTCAAATTAGGCTT
TTCCAGAAATAGACCGTGCCCCCCCCCCCCCCTGTTGAGGATATCAGATA
TCTAGGGGGTTAACGATTTCTGTTCAAAAGTAGATATCCAGGGGGGGTTA
AATATCTATAAGGGAGCCGATATCCAGGGGGTAAAGTGTCTTTTCAAGTA
AAAAATACGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAGG
ATGTTGAGCATATTGATAAGAGTGGATATCCAGGGGGTTCGATACTTCAA
AAAATCAATATCCTCAGCAGTGGGGGTAAAATATTTTTCTGGAAAAGCCC
ATTTCAAGATTTTATACTTTACTACACTTTTAGTTTACCACACTTCACTT
TAAAACTTATGTTATGAGATATAATCTGACATTGTCTCTGTTCATCTTAG
CACCCATGTGTTGCAGACTCGATGGGATCTCTGTCCCACTCGAAATTTTC
AGTTTTCAGTGGGAAAAACATCCTACACTTTCAGCCCCACTGTGAAATTG
ACTTTCGTTGCATCCCTATTTGAAATTCAATCAGAAATTTGCACTTGAAA
ACCATCCTCATTGGATTTTTTTAACTTGGAAGAAAAGAATTTCTATCCCC
TTGGGGATTTCGATGGAAATTTTATTCCCCGCTGTGGGAAAAAGCTCCAC
TGGGGCTGCGAACAGGGTTAGTATCTTATTATTCGATTCTCTGTGACTGT
TGGGGTAAGCATTATGTAATTAATTTTCGGGGGGAAGAGGTATTGTTAAA
GAGCTCTGAAATTTATTTTTTATATTAATTTTTTATTAATTTTAGTCCAT
GAGACTAAAATTTGTTATTATCTATCTATGCAAAACACAATTAATATATG
CACTTAGGTTATTATTATTCCATTATATCGATTTTTTATGCGTATTTTTT
GAAATTACAGGATGATTTTTATAGTGAATTTTTTTAAATAATTTTTTAGC
TTTTATACATTTTAAACGGTTATTTTTTTAGTGGCTGCTCTCTAGGCTGC
ACATTATTGTCTCTGATATGTTTTGATATATGGGATGCTATCCTTGTATA
AAATTCCCTTCTGAAAGGTACCCCGTGTCTTTGTGTTTTGAGTGGCTAGA
G

Coding sequence (CDS) from alignment at scaffold_16:91961..99161-

>TCONS_00049499 ID=TCONS_00049499|Name=TCONS_00049499|organism=Clytia hemisphaerica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_16:91961..99161- (Clytia hemisphaerica)
GTGGCTTGTGAAACAGATTTTGTGGCACGTAATGAACTCTTCACTGAGCT
AGTTGGTTCAACTGCACAGTCTGTTTTGAAATTCCGACAAAAAGTCATTG
AACAGAACATGAAGGTTTCCTCAAACCAAGAGATCACTCATCTAAGAGAA
ATGGTTTTAGAGCATGATTTGAAAGAGATGAAACATCCATCGCTTGATGT
GACCCTTGAGGAGCACCTCGTTCAACTTGTAGGTAAGATCGGTGAGAATA
TGAAGATAAAACGTGCGTTAGCAATGACCACAAACCAAGAAAATATCATT
GGAGTTTCTACGCATGGTGGAAATAACACTGTAACTTCTAATGGTAGCTT
GCTTGGTAAATTTGCCGGTGTTGTGGTACTAAAACCAAAGACAACAGATG
TTGATGTGGAGAATTTAAAGAAAATTGCACGTGATCTCTCACAGCACGTG
ATTGGTATGAATCCAATAGCTTTGCAGCCAAGTAATGATGTCTCGAAAGA
AGAAAGTTTACTTGGACAAGAATTTTTATTAAATGATAAAGTTACGGTTG
CCGAACTTTTGAATCAAAACCAAGCAGATGTTGTTGATTTTATTCGGTAT
GGTTTGACCAGTTAAGTCTTCTTAATAATCATCGATGTTTTTCAACCAAT
TCGATTCTGAATGCAATCAACAAACAACAATTGACAACATTGCGTAAAAA
AACTGGCTATTCTTTTACTAAATGCAATGAAGCTATGAAACTTTACGAGA
ATGACATGGAGAAAGCAGAAATATGGTTACACCAGCAAGCTGAAAAAGAA
GGATGGGCCAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTGAAGGGCT
TATTGGGGTTTTGACTGAACAAAATTATATCGCACTTGTAGAGATGATTT
CTAAAATGGCTTCAATACTTCGACAAAGACAGGTTTTACAGGGTGGCTTG
TGAAACAGATTTTGTGGCACGTAATGAACTCTTCACTGAGCTAGTTGGTT
CAACTGCACAGTCTGTTTTGAAATTCCGACAAAAAGTCATTGAACAGAAC
ATGAAGGTTTCCTCAAACCAAGAGATCACTCATCTAAGAGAAATGGTTTT
AGAGCATGATTTGAAAGAGATGAAACATCCATCGCTTGATGTGACCCTTG
AGGAGCACCTCGTTCAACTTGTAGGTAAGATCGGTGAGAATATGAAGATA
AAACGTGCGTTAGCAATGACCACAAACCAAGAAAATATCATTGGAGTTTC
TACGCATGGTGGAAATAACACTGTAACTTCTAATGGTAGCTTGCTTGGTA
AATTTGCCGGTGTTGTGGTACTAAAACCAAAGACAACAGATGTTGATGTG
GAGAATTTAAAGAAAATTGCACGTGATCTCTCACAGCACGTGATTGGTAT
GAATCCAATAGCTTTGCAGCCAAGTAATGATGTCTCGAAAGAAGAAAGTT
TACTTGGACAAGAATTTTTATTAAATGATAAAGTTACGGTTGCCGAACTT
TTGAATCAAAACCAAGCAGATGTTGTTGATTTTATTCGGTATGGTTTGAC
CAGTTAAGTCTTCTTAATAATCATCGATGTTTTTCAACCAATTCGATTCT
GAATGCAATCAACAAACAACAATTGACAACATTGCGTAAAAAAACTGGCT
ATTCTTTTACTAAATGCAATGAAGCTATGAAACTTTACGAGAATGACATG
GAGAAAGCAGAAATATGGTTACACCAGCAAGCTGAAAAAGAAGGATGGGC
CAAAGCCAAGAAACTTCAAAGTCGGTCAACTAGTGAAGGGCTTATTGGGG
TTTTGACTGAACAAAATTATATCGCACTTGTAGAGATGATTTCTAAAATG
GCTTCAATACTTCGACAAAGACAGGTTTTACAGGGTGGCTTGTGAAACAG
ATTTTGTGGCACGTAATGAACTCTTCACTGAGCTAGTTGGTTCAACTGCA
CAGTCTGTTTTGAAATTCCGACAAAAAGTCATTGAACAGAACATGAAGGT
TTCCTCAAACCAAGAGATCACTCATCTAAGAGAAATGGTTTTAGAGCATG
ATTTGAAAGAGATGAAACATCCATCGCTTGATGTGACCCTTGAGGAGCAC
CTCGTTCAACTTGTAGGTAAGATCGGTGAGAATATGAAGATAAAACGTGC
GTTAGCAATGACCACAAACCAAGAAAATATCATTGGAGTTTCTACGCATG
GTGGAAATAACACTGTAACTTCTAATGGTAGCTTGCTTGGTAAATTTGCC
GGTGTTGTGGTACTAAAACCAAAGACAACAGATGTTGATGTGGAGAATTT
AAAGAAAATTGCACGTGATCTCTCACAGCACGTGATTGGTATGAATCCAA
TAGCTTTGCAGCCAAGTAATGATGTCTCGAAAGAAGAAAGTTTACTTGGA
CAAGAATTTTTATTAAATGATAAAGTTACGGTTGCCGAACTTTTGAATCA
AAACCAAGCAGATGTTGTTGATTTTATTCGGTATGGTTTGACCAGTTAAG
TCTTCTTAATAATCATCGATGTTTTTCAACCAATTCGATTCTGAATGCAA
TCAACAAACAACAATTGACAACATTGCGTAAAAAAACTGGCTATTCTTTT
ACTAAATGCAATGAAGCTATGAAACTTTACGAGAATGACATGGAGAAAGC
AGAAATATGGTTACACCAGCAAGCTGAAAAAGAAGGATGGGCCAAAGCCA
AGAAACTTCAAAGTCGGTCAACTAGTGAAGGGCTTATTGGGGTTTTGACT
GAACAAAATTATATCGCACTTGTAGAGATGATTTCTAAAATGGCTTCAAT
ACTTCGACAAAGACAGGTTTTACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031400XLOC_031400Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049499-proteinTCONS_00049499-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049499-exon-scaffold_16-1575043694:98973..99161TCONS_00049499-exon-scaffold_16-1575043694:98973..99161Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1575043694:98464..98540TCONS_00049499-exon-scaffold_16-1575043694:98464..98540Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1575043694:97962..98239TCONS_00049499-exon-scaffold_16-1575043694:97962..98239Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1575043694:96390..97785TCONS_00049499-exon-scaffold_16-1575043694:96390..97785Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1575043694:91961..93429TCONS_00049499-exon-scaffold_16-1575043694:91961..93429Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1510915933:98973..99161TCONS_00049499-exon-scaffold_16-1510915933:98973..99161Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1510915933:98464..98540TCONS_00049499-exon-scaffold_16-1510915933:98464..98540Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1510915933:97962..98239TCONS_00049499-exon-scaffold_16-1510915933:97962..98239Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1510915933:96390..97785TCONS_00049499-exon-scaffold_16-1510915933:96390..97785Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1510915933:91961..93429TCONS_00049499-exon-scaffold_16-1510915933:91961..93429Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1491911889:98973..99161TCONS_00049499-exon-scaffold_16-1491911889:98973..99161Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1491911889:98464..98540TCONS_00049499-exon-scaffold_16-1491911889:98464..98540Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1491911889:97962..98239TCONS_00049499-exon-scaffold_16-1491911889:97962..98239Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1491911889:96390..97785TCONS_00049499-exon-scaffold_16-1491911889:96390..97785Clytia hemisphaericaexon
TCONS_00049499-exon-scaffold_16-1491911889:91961..93429TCONS_00049499-exon-scaffold_16-1491911889:91961..93429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:91961..99161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12013	1.59636	3.4155	4.44731	5.46208	4.3551	5.18974	5.43558	4.0181	0.652125	0.519151	2.08089	0	1.12726	0	0	2.11521	2.80213	0	0.161725	4.55299	4.47854	7.10361	6.27303	1.06984	3.71868	4.6621	2.75429	4.243	5.90765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014039Transl_elong_EFTs/EF1B_dimer
IPR001816Transl_elong_EFTs/EF1B
IPR009060UBA-like
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0003746 translation elongation factor activity
Blast
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BLAST of TCONS_00049499 vs. Swiss-Prot (Human)
Match: EFTS (Elongation factor Ts, mitochondrial OS=Homo sapiens GN=TSFM PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 4.333e-50
Identity = 103/285 (36.14%), Postives = 160/285 (56.14%), Query Frame = 2 
Query:  311 NAINKQQLTTLRKKTGYSFTKCNEAMKLYENDMEKAEIWLHQQAEKEGWAKAKKLQSRSTSEGLIGVLTEQNYIALVEVACETDFVARNELFTELVGSTAQSVLKFRQKVIEQNMKVS----SNQEITHLREMVLEHDLKEMKHPSLDVTLEEHLVQLVGKIGENMKIKRALAMTTNQENIIGVSTHGGNNTVTSNGSLLGKFAGVVVLKPKTTDVDVENLKKIARDLSQHVIGMNPIALQPSNDVSKEES---LLGQEFLLNDKVTVAELLNQNQADVVDFIRY 1144
            +A +K+ L  LR+KTGYSF  C +A++    D+++AEIWLH++A+KEGW+KA KLQ R T EGLIG+L E N   LVEV CETDFV+RN  F  LV   A   +   Q + +Q    S    ++ E++ L              P  + +L++ L   +GK+GENM +KRA  +       +G   HG   + + +  +LGK+  +V+ +   T     NL+ + R L QHV+GM P+++   +D    E+   +L Q +LL+  +T+ + +      VVDF+R+
Sbjct:   43 SASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPA-----------GPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVICE---TSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 313
The following BLAST results are available for this feature:
BLAST of TCONS_00049499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFTS4.333e-5036.14Elongation factor Ts, mitochondrial OS=Homo sapien... [more]
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