TCONS_00049498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049498
Unique NameTCONS_00049498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049498 ID=TCONS_00049498|Name=TCONS_00049498|organism=Clytia hemisphaerica|type=transcript|length=2859bp
AAATCACAAAATGTTTTTACAGTGCAAAGTTGTCATAATTGGTAACAATA
TATGTATCTATTTTTTCAGAATATcaatgaaaaaagtcaaaaaatgagtt
ttgtcaagaaaagaacaaaatctCCAAAGCCAACCAACAACCGTGATGAG
TCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACCCTTATC
GTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCCCTTATG
TTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTATCATA
TCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGTGCCTGC
ACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCACGTTTCC
TAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGTGCATT
GGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGCTGGTGA
ATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTGGTAAGA
TTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTTACTGGA
TCTGGTATTTTTACAAGGATCGTATCATTGCCTTTCATTGCCTACTGTTT
AATTTTCCATTTACCGCGACAATTCAAAAGAGTTTCTGGTGTCAAATTTT
GTGCTGGTTGGTCAGGGTCCAAGAACGAGCCTGTGGATGCAGATTCTTTC
ATTTGGATTATGCCCAGTCTAATTGCACAGCAGATTTTTTTCACTGTCTT
CTTGGTGTACATGAATGAAAATGGGTTGGATTTTGTATGaaaaatatcaa
tgaaaaaagttaaaaaatgagtTCTGtcaagaaaagaacaaaatctCCAA
AGCCAATCAACAACCATGATGAGTCATCAGAAATCAATGTCAGCTCTTTC
ATTCCAAACCCTCCGCCCTTATCGTGGTGGCGCATGGGTGGTATTTTATC
CGCTCTGTCAATCATCCCTTATGTTTACGTCATCCAGAAAAATACATTGA
ACTGGTGGCTTGTTGTTATCATATCTTTAAATCCATTGGTTCGTTATTTC
TTCCCATCACAATATGTGCCTGCACGCAATAGTCGTCCATATTGGATTTC
ACATCCTTGTTTAGCACGTTTCCTAGCAACCATTGGTGAACCTATTTTCT
TATGGGCTGAAGCGATGTGCATTGGTGTACCTTTTTGGAATGGACCAATG
GGTTGGTTAACCATTGCTGGTGAATCTATCTCATGGGTTCATTTGTTGTT
ACAAAGTGAGCTGATTGGTGTGATTGAAGATTCAACTTGGGTTTTGGTTC
AAATTGCGGCACTCTTTACTGGATCTGGTATTTTTACAAGGATCGTATCA
TTGCCTTTCATTGCCTACAATTTAATTTTCCATTTACCGCGACAATTCAA
AAGAGTTTTTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACG
AGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCA
CAGCAGATTTTGTTCACCGTTTTCTTGGTGTACATGAATCAAAATGGGTT
GGATTTTGTATGGTAAGTCATGGTACAAAGTTTCTTTGTAAGAATGCATT
TTCTTTTGGTTTCTTTCGTTTTTTTCCGTCTTTATGTTAGCTGATGTATA
TCGTTTATATtattttaagacttttaaatttgattaCGAGATAATTCAAa
ttaggcttttccagaaatagaccgtgcccccccccccccctgttgaggat
atcagaTATctagggggttaacgatttctGTTCAAAAGTAGATATCCAgg
gggggttaaatatctataAGGGAGccgatatccagggggtaaagtgtctt
ttcaagtaaaaaatacgatatccaggggtaagcatctttataagagagga
tatccaggatGTTGAGCATATTgataagagtggatatccagggggttcga
tacttcaaaaaatcaatatcctcagcagtgggggtaaaatatttttctgg
aaaagcccatttcaaGATTTTATACTTTACTACACTTTTAGTTTACCACA
CTTCACTTTAAAACTTATGTTATGAGATATAATCTGACATTGTCTCTGTT
CATCTTAGCACCCATGTGTTGCAGACTCGATGGGATCTCTGTCCCACTcg
aaattttcagttttcagtGGGAAAAACATCCTACACTTTCAGCCCCACTG
TGAAATTGACTTTCGTTGCATccctatttgaaattcaatcaGAAATTTGC
ACTTGAAAACCATcctcattggatttttttaacttggaagaaaagaattt
ctatccccttgGGGATTTCGATGGAAATTTTATTCCCCGCTGTGGGAAAA
AGCTCCACTGGGGCTGCGAACAGGGTTAGTATCTTATTATTCGATTCTCT
GTGACTGTTGGGGTAAGCATTATGTAATTAATTTTCGGGGGGAAGAGGTA
TTGTTAAAGAGctctgaaatttattttttatattaattttttattaattt
tagtCCATGAGACTAAAATTTGTTATTATCTATCTATGCAAAACACAATT
AATATATGCACTTAGGTTATTATTATTCCATTATATCGATTTTTTATgcg
tattttttgaaattacagGATGATTTttatagtgaatttttttaaataat
tttttagcttttatACATTTTAAACGGTTATTTTTTTAGTGGCTGCTCTC
TAGGCTGCACATTATTgtctctgatatgttttgatatatggGATGCTATC
CTTGTATAAAATTCCCTTCTGAAAGGTACCCCGTGTCTTTGTGTTTTGAG
TGGCTAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_16:91961..97006-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049498 ID=TCONS_00049498|Name=TCONS_00049498|organism=Clytia hemisphaerica|type=transcript|length=5046bp|location=Sequence derived from alignment at scaffold_16:91961..97006- (Clytia hemisphaerica)
AAATCACAAAATGTTTTTACAGTGCAAAGTTGTCATAATTGGTAACAATA
TATGTATCTATTTTTTCAGAATATCAATGAAAAAAGTCAAAAAATGAGTT
TTGTCAAGAAAAGAACAAAATCTCCAAAGCCAACCAACAACCGTGATGAG
TCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACCCTTATC
GTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCCCTTATG
TTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTATCATA
TCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGTGCCTGC
ACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCACGTTTCC
TAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGTGCATT
GGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGCTGGTGA
ATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTGGTAAGA
TTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTTACTGGA
TCTGGTATTTTTACAAGGTAACATTCTTTTAGGTTGTTGTTGGAATCTCA
AATTGTTCTGATACGCCAGGGACTTGTCCCTTAAAAAGACAAGGATTTTT
ATATTCACTCCTATCAAAACATCATTCACTCGACTAAAAACATTTTTGAA
CCATTCCCAGATAAGAAAAAAGGCAATATTTCTTCTACACAGGCAAGATA
ATTGTTTTGTCGTATAAATATATCATTTTACATATAAAATTTCTGGTCCT
TTCCAACGATAGATACAAGGGGGGTTTTACAATTTCCTATTTTTTCAGGA
TCGTATCATTGCCTTTCATTGCCTACTGTTTAATTTTCCATTTACCGCGA
CAATTCAAAAGAGTTTCTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTC
CAAGAACGAGCCTGTGGATGCAGATTCTTTCATTTGGATTATGCCCAGTC
TAATTGCACAGCAGATTTTTTTCACTGTCTTCTTGGTGTACATGAATGAA
AATGGGTTGGATTTTGTATGGTAAGTCATGGTATAAAGTTTCTTTGTAAG
AATGCATTTTCTTTTCTATTTCTTTCGTCTTTATTTTGGATGATCCGAAT
ATTTGGGTTGCATTATTTTTATTTTTTTAATTTTGATTATGAGATAAAAT
CAAACTTGATAGTTTTCAACCCTGCTATACTTTAGTTTACCATACTTCAC
TTTAAAACTTCAGTTATGACATTGTCTCTGTATATTTTTACCACCCTGTG
TCACAGACCCGTTTGGATCCCCGCCACACGGAAAAATTTTGCCAAAATTT
AGCCTCCGGTGGGAAAAACACCCTACAATTTCAGCCCCACTGGGAAATTC
ACTTTCATTTCATCCCCGTTTGAAATTCAATTAAAAATTTGCACTTGAAA
ACCATCTCTCTGGAGCTGTGAGAAAGGGGTGTATCTCTGTGTCTGTTGAT
TCTCTGTGACTGTACGGGCAGCATTATGTTTAGCTTAAATTAAAAATGGG
CTCTTCCAGAAAAAATCCGTTCATGGGGGGGTGGAGGATATATTATTTTT
TTCATGAATTACCCCTGGACATTTTGATTTTTAACCCCCTGGACACGGGT
TATACCCCTGGACAAACATCAAATCCCGTGGACACAAAAAATTACCCCTG
GACATTGCAATTTTTTGGTATTTTTTCAATACTCCTGGACAATTCATCCT
CCACCCCCCATGAATGGATTTTTTCTGGAAGAGCCCAATGTACACTTGCT
ACTTATATAATTGATCTCCAGGGGGGGAGGCATTTTTAAAGAATTCTGAA
ATCGATATTTATATAATTTTATAATCATGGACTAGAATATGCTATTATTA
TGTATATACAAAACACAATTAATATATGCACTTGAGTTTTGTTGTTGTAT
TATTTCATATTGAATTTTTATGCGTCTTTTTGAAATTAATGGATTTTTTT
ATAGTGAATTTTTAAAGAGAATTTTATAGCTTTTATACCTTTTGAACGGC
TATTTTACTGCCGGCGCTTTTCCTTTTCCATGTTAGATGAGTTAAACTTC
TAAAACTTCCGAATGTAAAACTGGGAATCGGAGAAATGTTAATTTTGCTA
ATTTTTACTCTCCTTTTTGTTTGGCTAACTCGAATTTTGGGTTCTTTTCA
CGAGACTTATCATTTACCAATGGTCAAGGTACCTTTTATATTTGATTATG
TTTCTTTAGGTAAAGCTAAAAGCGTAAACAAAAAATAAAATACACAGGTA
CTTTGAATTGCAAATTGAACTTTTGAAATTTTGAAACTTTTGAATTAAAA
CCAAGCAGATGTTGTTGATTTCATTCGGTAGAATATGATTGACCAACTTG
GTTGTGTAAAAAATTAACTCGAACATTTAAGGTGTACCTTAAAAAACCGA
GTTATGAAACTCGAAAATTTAAGGTGCACGTCATAAATAATCGAGTTTCT
TATACTGGAAAATTTAAGGTGCACCTAAAATGACCGAGTTAAAATTAACT
CCGAAAATTATAAAGGTGCACCTTAAATAAACCGAGTTATGGCTTCATAA
CTCGGGTTTTCATAACTCGATAATTATTACTGTTACTTCAAAAAATGTTT
TTACAGTGCAAAGTTGTCATAATTGGTAACAATATTATGTATCTATTTTT
TCAGAAAAATATCAATGAAAAAAGTTAAAAAATGAGTTCTGTCAAGAAAA
GAACAAAATCTCCAAAGCCAATCAACAACCATGATGAGTCATCAGAAATC
AATGTCAGCTCTTTCATTCCAAACCCTCCGCCCTTATCGTGGTGGCGCAT
GGGTGGTATTTTATCCGCTCTGTCAATCATCCCTTATGTTTACGTCATCC
AGAAAAATACATTGAACTGGTGGCTTGTTGTTATCATATCTTTAAATCCA
TTGGTTCGTTATTTCTTCCCATCACAATATGTGCCTGCACGCAATAGTCG
TCCATATTGGATTTCACATCCTTGTTTAGCACGTTTCCTAGCAACCATTG
GTGAACCTATTTTCTTATGGGCTGAAGCGATGTGCATTGGTGTACCTTTT
TGGAATGGACCAATGGGTTGGTTAACCATTGCTGGTGAATCTATCTCATG
GGTTCATTTGTTGTTACAAAGTGAGCTGATTGGTGTGATTGAAGATTCAA
CTTGGGTTTTGGTTCAAATTGCGGCACTCTTTACTGGATCTGGTATTTTT
ACAAGGTAATTTCTTTTAGATTGTTGTCAGAATCTCATATTGTTCTGATA
CGCTGATACATGTCCATAAACCACTTCTGGACAAGAAAAGTGCTAATTTC
TTCCCTACACATACAAAACAACTGTTTTTGTCGTATAATCATATCCCTTT
ACTCAAAATTTCTGGTTCTTTCCAACCATAGATATAAGGGACAATAGTGT
TTGAGATATTTGACCATTTGAAGTTTCCTCATCCGAAAAGAAGATACTAG
TTGTTTTATCATTTCCTATTTTTTCAGGATCGTATCATTGCCTTTCATTG
CCTACAATTTAATTTTCCATTTACCGCGACAATTCAAAAGAGTTTTTGGT
GTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACGAGCCTGTGGATGC
AGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCACAGCAGATTTTGT
TCACCGTTTTCTTGGTGTACATGAATCAAAATGGGTTGGATTTTGTATGG
TAAGTCATGGTACAAAGTTTCTTTGTAAGAATGCATTTTCTTTTGGTTTC
TTTCGTTTTTTTCCGTCTTTATGTTAGCTGATGTATATCGTTTATATTAT
TTTAAGACTTTTAAATTTGATTACGAGATAATTCAAATTAGGCTTTTCCA
GAAATAGACCGTGCCCCCCCCCCCCCCTGTTGAGGATATCAGATATCTAG
GGGGTTAACGATTTCTGTTCAAAAGTAGATATCCAGGGGGGGTTAAATAT
CTATAAGGGAGCCGATATCCAGGGGGTAAAGTGTCTTTTCAAGTAAAAAA
TACGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAGGATGTT
GAGCATATTGATAAGAGTGGATATCCAGGGGGTTCGATACTTCAAAAAAT
CAATATCCTCAGCAGTGGGGGTAAAATATTTTTCTGGAAAAGCCCATTTC
AAGATTTTATACTTTACTACACTTTTAGTTTACCACACTTCACTTTAAAA
CTTATGTTATGAGATATAATCTGACATTGTCTCTGTTCATCTTAGCACCC
ATGTGTTGCAGACTCGATGGGATCTCTGTCCCACTCGAAATTTTCAGTTT
TCAGTGGGAAAAACATCCTACACTTTCAGCCCCACTGTGAAATTGACTTT
CGTTGCATCCCTATTTGAAATTCAATCAGAAATTTGCACTTGAAAACCAT
CCTCATTGGATTTTTTTAACTTGGAAGAAAAGAATTTCTATCCCCTTGGG
GATTTCGATGGAAATTTTATTCCCCGCTGTGGGAAAAAGCTCCACTGGGG
CTGCGAACAGGGTTAGTATCTTATTATTCGATTCTCTGTGACTGTTGGGG
TAAGCATTATGTAATTAATTTTCGGGGGGAAGAGGTATTGTTAAAGAGCT
CTGAAATTTATTTTTTATATTAATTTTTTATTAATTTTAGTCCATGAGAC
TAAAATTTGTTATTATCTATCTATGCAAAACACAATTAATATATGCACTT
AGGTTATTATTATTCCATTATATCGATTTTTTATGCGTATTTTTTGAAAT
TACAGGATGATTTTTATAGTGAATTTTTTTAAATAATTTTTTAGCTTTTA
TACATTTTAAACGGTTATTTTTTTAGTGGCTGCTCTCTAGGCTGCACATT
ATTGTCTCTGATATGTTTTGATATATGGGATGCTATCCTTGTATAAAATT
CCCTTCTGAAAGGTACCCCGTGTCTTTGTGTTTTGAGTGGCTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031400XLOC_031400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049498-exon-scaffold_16-1575043694:96390..97006TCONS_00049498-exon-scaffold_16-1575043694:96390..97006Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1575043694:95887..96108TCONS_00049498-exon-scaffold_16-1575043694:95887..96108Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1575043694:93702..94252TCONS_00049498-exon-scaffold_16-1575043694:93702..94252Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1575043694:91961..93429TCONS_00049498-exon-scaffold_16-1575043694:91961..93429Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1510915933:96390..97006TCONS_00049498-exon-scaffold_16-1510915933:96390..97006Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1510915933:95887..96108TCONS_00049498-exon-scaffold_16-1510915933:95887..96108Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1510915933:93702..94252TCONS_00049498-exon-scaffold_16-1510915933:93702..94252Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1510915933:91961..93429TCONS_00049498-exon-scaffold_16-1510915933:91961..93429Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1491911889:96390..97006TCONS_00049498-exon-scaffold_16-1491911889:96390..97006Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1491911889:95887..96108TCONS_00049498-exon-scaffold_16-1491911889:95887..96108Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1491911889:93702..94252TCONS_00049498-exon-scaffold_16-1491911889:93702..94252Clytia hemisphaericaexon
TCONS_00049498-exon-scaffold_16-1491911889:91961..93429TCONS_00049498-exon-scaffold_16-1491911889:91961..93429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:91961..97006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354189	0.365798	0.190941	0.414196	8.29133	5.55391	4.83251	5.54111	5.64006	8.95338	8.56177	6.15652	7.00139	4.73278	13.0908	17.7545	9.69147	7.86125	4.07212	4.89165	4.44243	4.56862	1.38191	1.34205	2.92486	2.43073	5.3366	3.4785	18.3518	9.8131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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