TCONS_00049494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049494
Unique NameTCONS_00049494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049494 ID=TCONS_00049494|Name=TCONS_00049494|organism=Clytia hemisphaerica|type=transcript|length=917bp
tttcagaaatatagaacaaaaataaaaataatttctaaatACCATGTAAA
TGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAAGAAAGTCA
TCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAGGCCTTTCG
CCATCGAACGTACATCAATTCACCACGTGATGTAGTGATTTACGAGCATA
AGAAATCCACAGCCTTCAATAAACTATTAACATTGGTTGGTGTTGGACAA
TGGTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGC
CTTCTTTAGTTGGATAcccattgatgaGTCGGAGAAAAGGAAAGAAGGAA
GCACACGTCTACCATTAGCTGATTGGAAGTACCGTGCTGGATTCTCATTG
TTTGTGATTGGTACATCGACCGCTATGTTGGTGACCATTTGTGTCTTGTC
ACTTAGATCAGTTACATCCATCACATTGATGAAGAACAGCTCGAATGTTT
TAATCAATACAATAACGCCCGTAGGAACACCTTTCAAAACGATCACGCCC
ATTACTGAAGTCTCAGCCATTCAACAGCGCACAAcgcAAGCTGGTAACAT
ACCGTTGAAGTTGAAGAATCATCGTTTTCATTTCTTGGTTGACAAAAGTG
GACATTTTCTACAACCCACTCTCTTCGATCGGACAGTTGGTATAAGTAGA
AATTTTGGACAGGTCAAAAAATGAcataattattttaaagataGTCAAGG
AATTTTGAAtaagtattattttttaaatagaaatttttacttttttgatt
ttattgtatattttttcgTTTTCTGTTTTGTAAGAAAATACCATAACcca
agattttgaaatttgagtACGGAACCGCAGCTTGATTGTTATGAGAacta
ataaaaattaaaattgg
Run BLAST on NCBI

transcript from alignment at scaffold_16:77579..87967-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049494 ID=TCONS_00049494|Name=TCONS_00049494|organism=Clytia hemisphaerica|type=transcript|length=10389bp|location=Sequence derived from alignment at scaffold_16:77579..87967- (Clytia hemisphaerica)
TTTCAGAAATATAGAACAAAAATAAAAATAATTTCTAAATACCATGTAAA TGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAAGAAAGTCA TCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAGGTATCATT CTTCGATCACAGTTGACTCTCTCTAATTCGATCTTCAAGGGACCAAGAAT ATTATTCGGATTAGAGAAAGGTTCGAATTACAAAGAGTAGTTCACTTTCC AGCTGAGGGGGCCAATATTTTGGTTCGAATTACAGAAAGATTCGAATTAG AGAGAGTTGACTGTACTTAAGATCAGTGGTTTCGACATTCTTTACTAACC GCATAATGACTTTGGTAGACATTTCTGACGTCATTTGTCTGCTCGCACTC CACCCCCTTCATATAGTTTTAGTGCAAATTAATTCCAACATAGGAATAAA GCAAGGGCCTATAAATTTAGTACCATTAAGCTACTGAATACTGGAGTGAG ATTTGCCGCTCGCCACTAAAATTGAGTTTGTTGCGTTATTCTCGTGTTGG CGTATGGTAACCACAGATTTCACAGAAGTCCAAAGGGCTAGATAGAGTGC TTCAAACGCTTCTCCAAGCAAAAAAGTGAAAATCGCAAAAAAACATTGTT ACTATTGTTTTTGAAAATCCGGTGCGCTTCTGTTTGGTCAAGCGCTGAAA TTTTGTTGTATTAAAAATACAATGTCTCGTGACCTAGATAGGATTTCCTA CCTATAACCACGGCACATTTTTCAACCATAGTATTCCATCTAGCCCTCCC TAACTCCTTGAGGATGATATGAATTACGTATACTCTTCTGTTCTCGTTTC CAGGCCTTTCGCCATCGAACGTACATCAATTCACCACGTGATGTAGTGAT TTACGAGCATAAGAAATCCACAGCCTTCAATAAACTATTAACATTGGTTG GTGTTGGACAATGGTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAA AGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGCCT CGTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGC CTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTC TTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCC TTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTC GTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTT TAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGAC TGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTT GGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCG AAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATA CCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATT TGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCAT TGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTT AGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATG AGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCA TGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAA GCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTT CAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAG TCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAG CATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCG TTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGC CTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTC TTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCC TTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTC GTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTT TAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGAC TGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTT GGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCG AAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATA CCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATT TGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCAT TGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTT AGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATG AGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCA TGTTTCAAAGCATGCCTGCCTTCTTTAGCTGGATACCCATTGATGAGTAA GAAAGCCTCGTTTTTTTCGTGACTGGTTACACGAGTTTAGTCATGTTTCA AAGTATGCCTGCCTTCTTTAGCTGGATACCCATTGATGAGTAAGAAAGCC TCGTTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGTAT GCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTT TCTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTG CCTTCTTTAGTTGGATACCAATTGATGAGTAAGCAAGCCTCGTTTTTTTT CGTGACTGGTTACACGAGTTTAGTCATGTTTCAAAGTATGCCTGCCTTCT TTAGTTGGATACCCATTGATGAGTAAGAAAGCCTCGTTTTTTTCGTGACT GGTTACACGAGTTTAGTCATGTTTCAAAGTATGCCTGCCTTCTTTAGCTG GATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACA TGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCC ATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTC AGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATG AGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATG TTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGA AAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAA GCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTC TTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCC TGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTT TCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTG TTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGAC TGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCT GGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTAC ATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACC CATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTT CAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGAT GAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCAT GTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAG AAAACCTTATTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAA AGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGAAAGCCT CGTTTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCAT GCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTT TTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGTATGCCTGCC TTCTTTAGCTGGATACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGT GACTGGTTACATGAGTTCAGTCATGTTTCAAAGTATGCCTGCCTTCTTTA GCTGGATACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGTGACTGGT TACATGAGTTTAGTCATGTTTCAAAGCATGCCTGTATTCTTTAGTTGGAT GCCCCATTGATGAGTAAGCAAGCCTCGTTTTTTTTAATTTACATCTTGGA ATCTCAAGCTTTTGTCATATGGAACGATATACTCTCAGGTCCCTAATAAA CGAGGGAGGGGTGAAATCTGAAAATATTTTTTAACAAGCCGTATATGTAT AAAAGTTGCGAAGCGATCCAGAGCCACCTCGATTCGCAAGTTGCAAGCAA AACATTTAGTTCCAAATAATAGGAAAATTTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTACTGTTTGTGTACATAAAAGTCATCTTTAAA GTTCTATTTCAATGATCTTAAAAAGTTATCAAAAATAGCAAAACAAATTT TTTCCAGCAAGCTGCATGTTCTCACGACAAAAGTTTTCCAAATTTTGAAC GCATGAAAATTAAATGTTCATGGTTTGCTACAAAAGTTTTCCATAGTTTA AACCAATTCTTTAAAGATAATTTCATATTTCACGACACGTTTTCCACATT TTAATCAAAACGGAAGATCATTTCAAAGTTTACGATGAAAACTTTTAATT TAAAAAGTTATGTAAGGTGATTTCCGATTGTTTACATCCATATTCAATGT CTTTACGATTAGCTTACTTTTTCAGAGGTTGACATAACATTTATTCATCA ACATCACCCATCAGGAGGCCGCCTGGCTGTGGTTGTCAGCTTCAAAAGTG TTGGAAATAAGCTGCTACCGTATATAATTTCCTCCTCAAAGAGGTTTCAA TTACCAGTCGAGTGTCATTGTTGTAGAAGAAGCACCAAGTAAAATTCAAT CTATAGTTAATTTTGCTCCAGGTTCAAATTTTTCCAAACAACAAAATGAA TGAAGCCAAGGCAAGGAACTTCAGACTTTTTTATTTTTAAAGCTGCAAGT GTTTCATTTCCAGGCACAACATGGTCAGATTTCTCCAAAAATATTCAGTT TTTTGCCCTGTTACAATTCATTTACATGTACAGGCAAAATTCAAGTTAGC TTGTTGTCAAAATTGGCAAACTTGTCCTGTTTTTTTCAAGAAAATGCATC TCTCATTCCAAACCAACAGAATTGAAACAAAACATCAAATCCAGGGAGGT ATAATAAGAAAACTTTATCATCCACCAGTTCTTGTGCCAATCAGACAGAA AACATGATCCAATTCGACTCTTGAAGCATGAAAATCGAAGAAAAATAACC GAGGAGCAGTACATATTTGTTGTCTCCATTTGTTGCCGCCATCTTTAATG TTTTGACGGCTAGAAACCAGTATGGTCTAATCATCAAGACCCTTCCGAGC CGGGCGACGTTCTACAATCTGCAAGGAGAATAGAGCACCGCACCGATGTT TTCCGGCGACGTGTCTTTAAAAATAACGTTGTCCGTCTCAAAAAAAGCCA CTCTACTGTTCTCTCGCTCGGAGCTCGATTGAATACGAGCCATGTAGTCA TACACGGAGTTTCAAATTCGAATACGTCAAATTTAATATAGTGGAGATAA TTTTCTCTGTCATTTCCTGGAATATCCTTCATGTTTTATCCCCTTAATAT TCATTGTCGCGCGACTCGGAGATACTAAACGTTTTTCCCATCTCCTGCCT TTCAGATGGTTGAAAGAATGGAAAGTTAAAGGTACGCACACACGATAGCA AAACTGCTTCGCTCATGTACATTCGCTTCGCAAAAATTACTAAACGAAAG GGGTTCTTATAAGGTCCAGGGAGGTTTGTAAAAAATCGAAAAATTAACAA GTGGGGTGGACTCGTTTTTGTGGCTGCTATGGATATTACATTAACGTTGT TTTGACGTTATATGTCGCCCTGGACTCTCCTTTTCGGTTAACTGTTCATC GATTAGCTTATGAATGATACCAATATGCCTCTTGTATAGGAATTTAGATT TTGAACTTTTTTTTGTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACGTC TACCATTAGCTGATTGGAAGGTTTCTTCATCCCATTGTTATTATTTGACC AGTCTGACTACTTTTTGACGTAAAAAGGCACAACAAGTTTTATACAGCCA TAGTTGAATGAATTTATACAATAAAGATATTTAGGTATTTCCTATTGAAA AGCACAAATTTGACGTCTTAAGTTAATGATACAATAACTTTACTTGGTCG AGTAATGAATTTGTTTGAAGATCTGTCGTCAGATTTTGCTATTAGACGAG GCAGAAAGTCGCTCGTCACAACATTAGACCTTAGTTTGAATCGACTTGAT TCCATTGATTCCATTATAGAGGTCATTTCAATTGTTCTTTCTCTTAGTAC CGTGCTGGATTCTCATTGTTTGTGATTGGTACATCGACCGCTATGTTGGT GACCATTTGTGTCTTGTCACTTAGGTTTGTTATGTTATTGAAATGATTCT CTTCAAATGATGGATTTTCTGCAGCCCCGCCTGTGGTTTCAGGTGGCCAA CACCTGAGATTATTTTGGCTGAAATCTCCCATAGCCCCGTGTCTACTTAC ATGTGAAATCAGCAAATTCTTATCTTATCTTCGTTATTACCCCAAATTAC CAAAGCCTCATAAGATTCGTGAAGTTTCAACCTCAAGGGAATTTTTCTTA CGGAAGACTTACTGAACTAAAAAAAAGACTATATGGGTTCACACTTCGTA TGATTAAGTCTATTCGCAATATATTCTCCTTTTTCAGATCAGTTACATCC ATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATACAATAACGCC CGTAGGAACACCTTTCAAAACGATCACGCCCATTACTGAAGTCTCAGCCA TTCAACAGCGCACAAGTTAGATTTACTGTGCCTTGTGTACATTTCTTCTC GTTCATGTTTATACTTCTCAGCCATACAGATATTGAGCTTGTGGCAGTAT TCATTTCCATTTATCGATCATGTATGCTTATTACTTCCGAAACAAAATCA AAAAGTCACAAGATGGTGGTGCTGTACTGACATTTACAGTGTGTCCCAAA AAGTGGACATAGGATCCACCCCCCACCCCCAGAGATTTGAGGGTACCTAA AGAAAAAAAGTGTTAAAAAAGCCGGATACCTAGAAGTATTCTTAAATTTA GGGGGTACCTGATATGTTTGGGGGTACCTGAATTTTCATTAGTGTGGGCG GGGGCTGTTGTTTTTGTCTGAAGTCATCACCCTTGAATTCCTTGAAACCC TTGAAACAACATTGAAAAGTCAATATTATTTTGGGGACCCTTGACATGCA AGATTTATACCCTTGAAACCCTTGAAATGCCAAATTTTGTGGCCATTTTC AGCCATTTTAACTTTCAGAAATACAAAATTTTTCCCATTGCGTGGGATAC AAACATCGCAGTGACTTAAAAATGAGAGAACATACTTTTGGAACCCCTGA GACTCAAGGGGATATTCCACGCTCATTCTTAGGGGGCTTACCTTTTAACC CGTTAAGTGCCACTGGAATTATATGAGATTGGCAGGTCTGGGTGATAGAA TGGGTGGTTGTAAAATTATCAATTACAATTATCAGCCAATTTAAGGACCC TCCTTCACACAAAAATTGAAAATTCAACCTTTCTCCTTTTGTCGACAGAT TTCCTTGAAATCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAA CCCTTGAAAGTTTGTAGTAAATAAAAATCTCTTGAAACCCTGGAAAATTA TAGTAAAAAATGACACCCTTGAATTTGTTGAAAAAGAAGTGCTGGCTGCC ATGGAAGTATTTTCCCAGGAATGACAAAAGAGCAAAAAATCCCTTTTTGT ATTTTTAACAATAAAATAATTAAAAAGGGGGTAACTCAAAGTTGGGGGGT TACTTTAGAATTCTAAAGATTTTTGGGGTACCAAAATGATTGGGGGTACC TAAATCTTTTGTGGGTACCTGAACCCTGGACGACCCTATGGTGGACATTT TTCATAAAGTGAAGTCCTCAAAACGCATTATCTAAAGTGGGTTTAGAATA ATTGAAATAAGATTGAAATTCCCCGTCAATCAATAGATATTCCATTCCGA AGATGATTGAATAGGTTTTTGAGATTAAAATATTAAGTATACAAGTCATA AAGCCTCGCATGATTATGAGGATTTTACTTTATATAAAAATGTGTCCACT TTTCTTTTTGGGACACACTGTATTTAACGAATTTTTCTTTACTAACTGCA GTTTCGTAGAGATGTATGAATCCGACGACAACACTAAATTGAATTACAGT GGACTTTTGTTCATTCAAACTTCTATTATTCGAATCTTTCTTTAATTCAA ACTCTTTCTATAATTCGAACTTTTCTTCATTCCCCGTCAAGGAGAAACCC TCGTGAAATACTTTCAATAATCCGAATCTTTCTATAATTCGAACAAAATA GACTCCTCGTTCGAGTTCGAATTAGCGAGACTCACTGCACATTTTTTCAT TTTCAGCGCAAGCTGGTAACATACCGTTGAAGTTGAAGAATCATCGTTTT CATTTCTTGGTTGACAAAAGTGGACATTTTCTACAACCCACTCTCTTCGA TCGGACAGTTGGTATAAGTAGAAATTTTGGACAGGTCAAAAAATGACATA ATTATTTTAAAGATAGTCAAGGAATTTTGAATAAGTATTATTTTTTAAAT AGAAATTTTTACTTTTTTGATTTTATTGTATATTTTTTCGTTTTCTGTTT TGTAAGAAAATACCATAACCCAAGATTTTGAAATTTGAGTACGGAACCGC AGCTTGATTGTTATGAGAACTAATAAAAATTAAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031399XLOC_031399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049494-exon-scaffold_16-1575043694:87826..87967TCONS_00049494-exon-scaffold_16-1575043694:87826..87967Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1575043694:86930..87114TCONS_00049494-exon-scaffold_16-1575043694:86930..87114Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1575043694:80398..80449TCONS_00049494-exon-scaffold_16-1575043694:80398..80449Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1575043694:79994..80070TCONS_00049494-exon-scaffold_16-1575043694:79994..80070Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1575043694:79553..79680TCONS_00049494-exon-scaffold_16-1575043694:79553..79680Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1575043694:77579..77911TCONS_00049494-exon-scaffold_16-1575043694:77579..77911Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:87826..87967TCONS_00049494-exon-scaffold_16-1510915933:87826..87967Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:86930..87114TCONS_00049494-exon-scaffold_16-1510915933:86930..87114Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:80398..80449TCONS_00049494-exon-scaffold_16-1510915933:80398..80449Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:79994..80070TCONS_00049494-exon-scaffold_16-1510915933:79994..80070Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:79553..79680TCONS_00049494-exon-scaffold_16-1510915933:79553..79680Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1510915933:77579..77911TCONS_00049494-exon-scaffold_16-1510915933:77579..77911Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:87826..87967TCONS_00049494-exon-scaffold_16-1491911889:87826..87967Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:86930..87114TCONS_00049494-exon-scaffold_16-1491911889:86930..87114Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:80398..80449TCONS_00049494-exon-scaffold_16-1491911889:80398..80449Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:79994..80070TCONS_00049494-exon-scaffold_16-1491911889:79994..80070Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:79553..79680TCONS_00049494-exon-scaffold_16-1491911889:79553..79680Clytia hemisphaericaexon
TCONS_00049494-exon-scaffold_16-1491911889:77579..77911TCONS_00049494-exon-scaffold_16-1491911889:77579..77911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:77579..87967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
157.777 155.174 101.2 91.0673 13.7969 11.8729 18.1962 23.0012 18.8365 19.7673 21.1289 19.8289 10.4495 11.3462 14.3623 21.5145 26.2507 20.4355 0.625286 6.65982 18.6345 16.1898 59.4645 49.6898 14.0969 14.9347 20.8763 15.6085 27.6581 29.757
Blast
BLAST of TCONS_00049494 vs. Swiss-Prot (Human)
Match: TM223 (Transmembrane protein 223 OS=Homo sapiens GN=TMEM223 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.277e-19
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  176 RDVVIYEHKKSTAFNKLLTLVGVGQWFVTGYMSLVMFQSMPAFFSWIPID--ESEKRKEGSTRLPLADWKYRAGFSLFVIGTSTAMLVTICVLSLRSVTSITLMKNSSNVLINTITPVGTPFKTITPITEVSAIQQRTTQAGNIPLKLKNHRFHFLVDKSGHFLQPTLFDRTVGISRNF 706
            RDV+++EH +   F  +L L   GQ      M++      P     +P+   ++E    G   L  A W+Y  G ++        +L    + SLRSV S+ L      V + T  P G       P+ +VS +  R      +PLK+K  RF+FL+DK+GHF    LFD TVG  R+ 
Sbjct:   32 RDVLLFEHDRGRFFT-ILGLFCAGQGVFWASMAVAAVSRPP-----VPVQPLDAEVPNRGPFDLRSALWRY--GLAVGCGAIGALVLGAGLLFSLRSVRSVVLRAGGQQVTLTTHAPFGLGAHFTVPLKQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKTGHFPNTKLFDNTVGAYRSL 202          
The following BLAST results are available for this feature:
BLAST of TCONS_00049494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2231.277e-1931.28Transmembrane protein 223 OS=Homo sapiens GN=TMEM2... [more]
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