TCONS_00049489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049489
Unique NameTCONS_00049489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=transcript|length=2449bp
CTCTCTTTGTGATATTTCGTGGCGCGTGACAAATAAAATCAGAACATTCT
ATTTATTCAGGTAAAAGATTGTTTACaatcgaaatcaaaacaaatatggc
ggaCGAAGAATACAGTTTGTCAGAAtttgaagaagatgaagaaagtTTTG
AAGAATCTGATGGCGAATCttatgaaagtgaaaatgatcATGTAGATGAA
AGTAAAGACTTTTCAGAAACTGATAAAGAGCTTCATAATTTATTTGAAAG
TACAAATTTAGAGGATGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTG
AAATTTTGTTAGCAACTTTGCGGAAGGAAGGAAGAATACAGTTTGTCAGA
AtttgaagaagatgaagaaagtTTTGAAGAATCTGATGGCGAATCttatg
aaagtgaaaatgatcATGTAGATGAAAGTAAAGACTTTTCAGAAACTGAT
AAAGAGCTTCATAATTTATTTGAAAGTACAAATTTAGAGGATGTTGGTGG
TGATGAATTTGCAATTCAAAGTCCTGAAATTTTGTTAGCAACTTTGCGGA
AGGAAGATGACACATACCTTGAATTTGAGTCACTAAAAGTAAACAGAATT
AAGTGTTTGGGACTATGTAAAATAATATTTGGACATGATGACTGGAGAAC
AGCAGAAGCACATATCCAACTTGCAGAAGCATACACCAAAGGGAAATGGT
ACCACCAGCAATCATTGAAACATGCAAATTTGGCACGTGACATTCTACTA
GCAGTTCAGAACAAAAACAAAGGTTCTGTTCCTTATCTCGAGCTTGAAAG
TCTTCTTCAAAACATGTACTTAATTCttggaaaaacaaatttaaagttAG
GAAGAGATAAAGCTTCAGAAAACTGTTTGTTAAAAGCAAAACTTGTTTCT
GACAAAACTCAGTCTGGGAGTATCAAATTTCAGCTTCTGCGTGTATCAAT
TTTATCAGCTTTGGCTGATACCTCAAGTAAGCttggaaattttggacaaa
GTACTGAATTTATTGAGGAAGCTTTAGAAAATGTCCATAAAATGGATGAC
ACTTATAAACACCTTGCAATAAACTTGTACAAACAAATGGTAAATATTGA
GCTGCTTAatgaaaagtatgcaaatctTGATGCTGCAAATGATTCAGCAC
AAAAAGCTTTGAGTATTTCTATTGATGAGAATGGACATGACTTCCAAGAG
ACAGCAGAACTTTTTACTTTACTTTGTAAAGTAGAATCACTCAGAGAAAT
TAGTGATTATGATAAAATCGAGAAAAATATCTCTGAAGCATTAGGAATCT
ATGAAACTCTTGATCTTAATGAAAACAAATATCAACTTTACAAATACATT
GCAAAATTCTGATGCAACAAGATAAACTGGTTGATGCAAAATCACTCTTA
GATGGAGCTATTGAAAAATGTGAGAATTGGTTTGGGGACTGTTCTCTACA
AACTGCAGAATTGTATGATCTCATGGGAAGTATACTGTTTGCACAAAAAA
GGTTACCAAATGCACTGTCTTACTTTACAAAGGCTTTTGAGATTTATGAT
GGGAAAAGAAAATGTctcaagaagaaagaaaaattaaaacatatcATTGA
GATCATTCGAAAGACTTGCAAAGATGATAAGCTGAAGACATCAGAGGAAC
GTTTGAAAGAGAGACCTAGGTTTGCATGATCTTTGTTTATGTAATTTAAC
TTATTGTTACACTTTATACACTAATAACTTTTTACACTaataacttttgt
tttgttaCACTAATTTCATACTAATTTTGCGTAAAATTATctttaggtgt
acaaactttcacgagcagaaactttcgcgaaatttgcgaaagtttatgct
cgtgaaaaattctcaaaaaaattggaagTCTATAAAACTTAGCGAGCCTC
ACCAACCagaaaccgggatttttcattccatttctataattgcgtagaaa
aaacgcgggtgacgccTATACTACAGGCTAATAAAACCTCGAAATTGCGA
AATCGTAATAATTATCAAATGTTCGGcatatttttatcatttaaTGCCTT
TTTAATGTCGTTGGGCGGCCGTCTgcctttccttggacacaggaacgcgg
taATAGTACATAGAAAATACAAATTACTGCGGGAGATTggtttggaaaga
aaaaatagCATTCAGCAAACGTAGTGAGCCGATTGCAAGCGTAAGCTGTA
GCGAAAAACAACGACGTTGTTTACTAGTCTaatttttatccaacgattcg
cgaaagtttatgcttgcgaaaaacattttttcctaaaattcgcgaaagta
aatgtcataGATTTCGTCAGTTTCTCacctcgcaaaagtttctgctcgcg
aaagtttgtatgcCTAAATATTACATATTTGTAAATGAAGAATTAAATac
tctttaaaagtttttttaagattacaaaaaatataaacataaaaacGAG
Run BLAST on NCBI

protein sequence of TCONS_00049489-protein

>TCONS_00049489-protein ID=TCONS_00049489-protein|Name=TCONS_00049489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MYLILGKTNLKLGRDKASENCLLKAKLVSDKTQSGSIKFQLLRVSILSAL
ADTSSKLGNFGQSTEFIEEALENVHKMDDTYKHLAINLYKQMVNIELLNE
KYANLDAANDSAQKALSISIDENGHDFQETAELFTLLCKVESLREISDYD
KIEKNISEALGIYETLDLNENKYQLYKYIAKF
Run BLAST on NCBI

transcript from alignment at scaffold_16:22541..25375-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at scaffold_16:22541..25375- (Clytia hemisphaerica)
CTCTCTTTGTGATATTTCGTGGCGCGTGACAAATAAAATCAGAACATTCT ATTTATTCAGGTAAAAGATTGTTTACAATCGAAATCAAAACAAATATGGC GGACGAAGAATACAGTTTGTCAGAATTTGAAGAAGATGAAGAAAGTTTTG AAGAATCTGATGGCGAATCTTATGAAAGTGAAAATGATCATGTAGATGAA AGTAAAGACTTTTCAGAAACTGATAAAGAGCTTCATAATTTATTTGAAAG TACAAATTTAGAGGATGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTG AAATTTTGTTAGCAACTTTGCGGAAGGAAGATGACACATACCTTGAATTT GAGTCACTAAAAGTAAACAGAATTAAGTGTTTGGGACTATGTAAAATAAT ATTTGGACATGATGACTGGAGAACAGCAGAAGCACATATCCAACTTGCAG AAGCATACACCAAAGGGAAATGGTNATTACCTGAAGTGACTCCTATACTT GAAATGTGCTTACGCGGTCATTCTGAGTATCGAATCTCTATTTGTGATAT TTCGTGGCGCGTGACAAATAAAATCAGAACATTCTATTTATTCAGGTAAA AGATTGTTTACAATCGAAATCAAAACAAATATGGCGGACGAAGAATACAG TTTGTCAGAATTTGAAGAAGATGAAGAAAGTTTTGAAGAATCTGATGGCG AATCTTATGAAAGTGAAAATGATCATGTAGATGAAAGTAAAGACTTTTCA GAAACTGATAAAGAGCTTCATAATTTATTTGAAAGTACAAATTTAGAGGA TGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTGAAATTTTGTTAGCAA CTTTGCGGAAGGAAGATGACACATACCTTGAATTTGAGTCACTAAAAGTA AACAGAATTAAGTGTTTGGGACTATGTAAAATAATATTTGGACATGATGA CTGGAGAACAGCAGAAGCACATATCCAACTTGCAGAAGCATACACCAAAG GGAAATGGTACCACCAGCAATCATTGAAACATGCAAATTTGGCACGTGAC ATTCTACTAGCAGTTCAGAACAAAAACAAAGGTTCTGTTCCTTATCTCGA GCTTGAAAGTCTTCTTCAAAACATGTACTTAATTCTTGGAAAAACAAATT TAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGTTTGTTAAAAGCAAAA CTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAAATTTCAGCTTCTGCG TGTATCAATTTTATCAGCTTTGGCTGATACCTCAAGTAAGCTTGGAAATT TTGGACAAAGTACTGAATTTATTGAGGAAGCTTTAGAAAATGTCCATAAA ATGGATGACACTTATAAACACCTTGCAATAAACTTGTACAAACAAATGGT AAATATTGAGCTGCTTAATGAAAAGTATGCAAATCTTGATGCTGCAAATG ATTCAGCACAAAAAGCTTTGAGTATTTCTATTGATGAGAATGGACATGAC TTCCAAGAGACAGCAGAACTTTTTACTTTACTTTGTAAAGTAGAATCACT CAGAGAAATTAGTGATTATGATAAAATCGAGAAAAATATCTCTGAAGCAT TAGGAATCTATGAAACTCTTGATCTTAATGAAAAGCAAATATCGACTTTA CAAATACATTGTAAGATTCTGATGCAACAGNATCTACGAAACTCTTGATC TTAATGAAAAGCAAATATCAACTTTACAAATACATTGCAAAATTCTGATG CAACAAGATAAACTGGTTGATGCAAAATCACTCTTAGATGGAGCTATTGA AAAATGTGAGAATTGGTTTGGGGACTGTTCTCTACAAACTGCAGAATTGT ATGATCTCATGGGAAGTATACTGTTTGCACAAAAAAGGTTACCAAATGCA CTGTCTTACTTTACAAAGGCTTTTGAGATTTATGATGGGAAAAGAAAATG TCTCAAGAAGAAAGAAAAATTAAAACATATCATTGAGATCATTCGAAAGA CTTGCAAAGATGATAAGCTGAAGACATCAGAGGAACGTTTGAAAGAGAGA CCTAGGTTTGCATGATCTTTGTTTATGTAATTTAACTTATTGTTACACTT TATACACTAATAACTTTTTACACTAATAACTTTTGTTTTGTTACACTAAT TTCATACTAATTTTGCGTAAAATTATCTTTAGGTGTACAAACTTTCACGA GCAGAAACTTTCGCGAAATTTGCGAAAGTTTATGCTCGTGAAAAATTCTC AAAAAAATTGGAAGTCTATAAAACTTAGCGAGCCTCACCAACCAGAAACC GGGATTTTTCATTCCATTTCTATAATTGCGTAGAAAAAACGCGGGTGACG CCTATACTACAGGCTAATAAAACCTCGAAATTGCGAAATCGTAATAATTA TCAAATGTTCGGCATATTTTTATCATTTAATGCCTTTTTAATGTCGTTGG GCGGCCGTCTGCCTTTCCTTGGACACAGGAACGCGGTAATAGTACATAGA AAATACAAATTACTGCGGGAGATTGGTTTGGAAAGAAAAAATAGCATTCA GCAAACGTAGTGAGCCGATTGCAAGCGTAAGCTGTAGCGAAAAACAACGA CGTTGTTTACTAGTCTAATTTTTATCCAACGATTCGCGAAAGTTTATGCT TGCGAAAAACATTTTTTCCTAAAATTCGCGAAAGTAAATGTCATAGATTT CGTCAGTTTCTCACCTCGCAAAAGTTTCTGCTCGCGAAAGTTTGTATGCC TAAATATTACATATTTGTAAATGAAGAATTAAATACTCTTTAAAAGTTTT TTTAAGATTACAAAAAATATAAACATAAAAACGAG

Coding sequence (CDS) from alignment at scaffold_16:22541..25375-

>TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_16:22541..25375- (Clytia hemisphaerica)
CAAATATCAACTTTACAAATACATTGCAAAATTCTGAATGTACTTAATTC
TTGGAAAAACAAATTTAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGT
TTGTTAAAAGCAAAACTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAA
ATTTCAGCTTCTGCGTGTATCAATTTTATCAGCTTTGGCTGATACCTCAA
GTAAGCTTGGAAATTTTGGACAAAGTACTGAATTTATTGAGGAAGCTTTA
GAAAATGTCCATAAAATGGATGACACTTATAAACACCTTGCAATAAACTT
GTACAAACAAATGGTAAATATTGAGCTGCTTAATGAAAAGTATGCAAATC
TTGATGCTGCAAATGATTCAGCACAAAAAGCTTTGAGTATTTCTATTGAT
GAGAATGGACATGACTTCCAAGAGACAGCAGAACTTTTTACTTTACTTTG
TAAAGTAGAATCACTCAGAGAAATTAGTGATTATGATAAAATCGAGAAAA
ATATCTCTGAAGCATTAGGAATCTATGAAACTCTTGATCTTAATGAAAAC
AAATATCAACTTTACAAATACATTGCAAAATTCTGAATGTACTTAATTCT
TGGAAAAACAAATTTAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGTT
TGTTAAAAGCAAAACTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAAA
TTTCAGCTTCTGCGTGTATCAATTTTATCAGCTTTGGCTGATACCTCAAG
TAAGCTTGGAAATTTTGGACAAAGTACTGAATTTATTGAGGAAGCTTTAG
AAAATGTCCATAAAATGGATGACACTTATAAACACCTTGCAATAAACTTG
TACAAACAAATGGTAAATATTGAGCTGCTTAATGAAAAGTATGCAAATCT
TGATGCTGCAAATGATTCAGCACAAAAAGCTTTGAGTATTTCTATTGATG
AGAATGGACATGACTTCCAAGAGACAGCAGAACTTTTTACTTTACTTTGT
AAAGTAGAATCACTCAGAGAAATTAGTGATTATGATAAAATCGAGAAAAA
TATCTCTGAAGCATTAGGAATCTATGAAACTCTTGATCTTAATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031398XLOC_031398Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049489-proteinTCONS_00049489-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049489-exon-scaffold_16-1575043694:25046..25375TCONS_00049489-exon-scaffold_16-1575043694:25046..25375Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1575043694:23742..24736TCONS_00049489-exon-scaffold_16-1575043694:23742..24736Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1575043694:22541..23664TCONS_00049489-exon-scaffold_16-1575043694:22541..23664Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1510915933:25046..25375TCONS_00049489-exon-scaffold_16-1510915933:25046..25375Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1510915933:23742..24736TCONS_00049489-exon-scaffold_16-1510915933:23742..24736Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1510915933:22541..23664TCONS_00049489-exon-scaffold_16-1510915933:22541..23664Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1491911889:25046..25375TCONS_00049489-exon-scaffold_16-1491911889:25046..25375Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1491911889:23742..24736TCONS_00049489-exon-scaffold_16-1491911889:23742..24736Clytia hemisphaericaexon
TCONS_00049489-exon-scaffold_16-1491911889:22541..23664TCONS_00049489-exon-scaffold_16-1491911889:22541..23664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:22541..25375 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61332 2.70284 1.95469 1.91236 10.9143 7.15628 6.03921 5.68084 4.43108 3.58743 2.61555 2.83534 2.84406 2.03469 2.03253 2.14261 1.7359 2.44951 2.74434 3.5941 2.83297 2.30802 6.15619 5.9766 2.1086 3.06564 3.43135 2.06279 2.77752 2.93431
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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