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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049484 ID=TCONS_00049484|Name=TCONS_00049484|organism=Clytia hemisphaerica|type=transcript|length=1740bp ACTGGGCGAACAATGAAAATCGGGGAAAGTAAACCGGTCTCAAATAATCC TTCCAATCATTTACCCATGATTCCACAGGCTAATGTTCAAAAATATAGCC CTAGACCTGCACGTAAAGCATCGCAAAGTTCCTACGTGCCGACTATTTCA AATAAACAACCGCGACCACCGAGTCAAGAGAAGAAACAACGACCCGTTGC CGgtaaaatgatggaatcgaaCTTAAGAAAGTTTTCAGCAGCAAACCGAC CTCGTTTTGTACCTGATCAACATTTCAAATCACCACCCCAAATCAAACAC CCTGTGCTCAACACTCGGCCCTCAGACCAACGCCCTTCTTCACCAGGAAA TCAGCAAAACCATTTGAATGTACATTTGACGCTTGCATCTCAACGCCCCA CATCGCCCGGTCCTAAGGGTGCTGGGGTTGGCGAAGAAAAGAAAGTTCGA AGAATTTCCCTAATTAAGAGTCCAAGACCGTTATCACCAAACCCACATGG AATGAGTGCAGTGGGAGCAATAGCTGAGCAGCCGGAAGATGAAGAAAAAC CAGTTGTCATAGAGATAGAAGAAGAACGTATCAACAAACCTTGGAATAAC TGGATCAAAGCTGTCACTGTAGAAGCAGACACAGACGTGGAAAGTGGTGG AGAACGCCCAATGACGCCCGATCCAGAGGGTGGTTCATCAAACAGTACAC TTCAAGTACAACAACAGGGTAACGCTAGAAAGAAATCATTCGATCGATGG GTACAAGAGAAAGCACAGGaggaacaagaaaaagaattacaaaagaTGAG AGAAGCTTATGAAAAAGAAAGAGAGGAGGAAGAGAAGAAGGCATCACATC ACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAAGAAGATCGCGCTcga caagaaaaagaaaaacatgaacaagaacaaaaagaaaaggaaagaaaaga agCTGAAGAAAAGGCTAAACAACAAGGTAAATCATTCGAGAAATGGGTGA AAGAGAAGGCAGAGTATGACCGTCTATTGAAACAACAACATGAACAAGAC gctaaagaaaatcaaaagcaaCAGAAGACGTTGAAAGGGAAAACTTTTGA AGATTGGCAAAAAGAAATGGAAGTAAAACGAAAGCAGGATattgaagaaa agaaaacgAAAGAGACCAAGgaaaaggAAAAGCAAGAAGAAGCAAAAGTA CGGCGCCGAAAAGAATCATCGGCAAAATTCCAACAATGGTTACTGGATAA AGAGAAATTAGCTTTGGAAAAAGAAATGCAAGAATTGAAGAAACGAAAAG TATCGACCGCTAAAAATGCTACACGTAAAGCAAGTACAATGAAAAAGCCT GCTCCGAAATAATAACATTGTGTCTTCAtcaaagagaaaattttgatttc ataggAATCCACTGAAACATGTAGAACCTTGACTGCTAATCTGCTTAATC GATCAACGGCTAAGTCAAAGTAAGGTATTGAACCATACAGGTTTTACTGT AAATAAATATTACTGATTTTAAGAATTCGATTCCTTCATTATCAACTACT GTTTGTTACCTTCTGGTGTCATGGTAGCACCTAATTCCCTAAACTGGTAC GGTGAAAATGTAGAGCTTTTCAGTTTGTGACGATTTTTTCCAATAGCAAA TATCGATGCACCAAAAGGAAGAAAATCATTTCATAAGCTAAATTTATTCT GCTTTATGCAGTGGCCAAAGCGAAGTTCTTTTTGTCTCAG Run BLAST on NCBI transcript from alignment at scaffold_16:254830..262191+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049484 ID=TCONS_00049484|Name=TCONS_00049484|organism=Clytia hemisphaerica|type=transcript|length=7362bp|location=Sequence derived from alignment at scaffold_16:254830..262191+ (Clytia hemisphaerica) ACTGGGCGAACAATGAAAATCGGGGAAAGTAAACCGGTCTCAAATAATCC
TTCCAATCATTTACCCATGATTCCACAGGCTAATGTTCAAAAATATAGCC
CTAGACCTGCACGTAAAGCATCGCAAAGTTCCTACGTGCCGACTATTTCA
AATAAACAACCGCGACCACCGAGTCAAGAGAAGAAACAACGACCCGTTGC
CGgtaaaatgatggaatcgaaCTTAAGAAAGTTTTCAGCAGCAAAGTAAG
ATATATGATATGAAACAATGGTTTCAATGGGGTTGGATCACTGATTTCTA
GCTGCTTGACTGGATTGAGCTTTCCATATAAGGAAGCGTATTCAGTTTTA
GAGCTGACTAGTCCatcatcttgttttcaattctggttGTCACAGCGAGA
TTCGAACGAAGGTCCACTTAGAAAACAACATGGTTGACTAGTCAACTTCA
AAACTGGAAACACTTCCATGGGAAATCTTCGAGCAGTAAGCCTATCTAGG
GTATAAAATAATGTGATGTCTATGATTTGGAAAGGCTTTGTCATTACTAG
CACCTTAGAaacaaaaactgacaaaaacgTTACCGAGAGGTGAATTCTAG
CTTTGGACAGTCTCCTGTGAAGACCACATTCagcgattttctgaaaattt
ggtTTTAAAGACACACAAAGAGCCTTTTTAATCATCATATTAATCTACGA
TTGATTATTATGCCTCCGTCAAATGCGATCTTTGAGAACCCTTGCTTGGG
TACCAGTTAGGCTTTAATTTGTCGAAgttcaaaaaaattctcttgGATGT
TTGTAACCTATAATCTTATATTATACATCTTTTATACTTTACCTTTTAGC
CGACCTCGTTTTGTACCTGATCAACATTTCAAATCACCACCCCAAATCAA
ACACCCTGTGCTCAACACTCGGCCCTCAGACCAACGCCCTTCTTCACCAG
GAAATCAGCAAAACCATTTGAATGTACATTTGACGCTNCTCCAATCATAA
TAGAGCAAACCGAAACTGGGCGAACAATGAAAATCGGGGAAAGTAAACCG
GTCTCAAATAATCCTTCCAATCATTTACCCATGATTCCACAGGCTAATGT
TCAAAAATATAGCCCTAGACCTGCACGTAAAGCATCGCAAAGTTCCTACG
TGCCGACTATTTCAAATAAACAACCGCGACCACCGAGTCAAGAGAAGAAA
CAACGACCCGTTGCCGgtaaaatgatggaatcgaaCTTAAGAAAGTTTTC
AGCAGCAAAGTAAGATATATGATACGAAACAATGGTTTCAATGGGGTTGA
ATCACTGATTTCTAGCTGCTTGACTGGATTGAGCTTTCCATATAAGGAAG
CGTATTCAGTTTTAGAGCTGACTAGTCTatcatcttgttttcaattctgg
ttGTCACAGCGAGATTCGAACGAAGGTCCACTTAGAAAACAACATGGTTG
ACTAGTCAACTTCAAAACTGGAAACACTTCCATGGGAAATCTTCGAGCAG
TAAGCCTATCTAGGGTATAAAATAATGTGATGTCTATGATTTGGAAAGGC
TTTGTCATTACTAGCACCTTAGAaacaaaaactgacaaaaacgTTACCGA
GAGGTGAATTCTAGCTTTGGACAGTCTCCTGTGAAGACCACATTCagcga
ttttctgaaaatttggtTTTAAAGACACACAAAGAGCCTTTTTAATCATC
ATATTAATCTACGATTGATTATTATGCCTCCGTCAAATGCGATCTTTGAG
AACCCTTGCTTGGGTACCAGTTAGGCTTTAATTTGTCGAAgttcaaaaaa
attctcttgGATGTTTGTAACCTATAATCTTATATTATACATCTTTTATA
CTTTACCTTTTAGCCGACCTCGTTTTGTACCTGATCAACATTTCAAATCA
CCACCCCAAATCAAACACCCTGTGCTCAACACTCGGCCCTCAGACCAACG
CCCTTCTTCACCAGGAAATCAGCAAAACCATTTGAATGTACATTTGACGC
TTGCATCTCAACGCCCCACATCGCCCGGTCCTAAGGGTGCTGGGGTTGGC
GAAGAAAAGAAAGTTCGAAGAATTTCCCTAATTAAGAGTCCAAGACCGTT
ATCACCAAAGTGAgtacaaaataaatattttcattaattaCGGAAAATAG
GGAATTGGCTTTGGATCGAGAGAGCTAATTAATTTAAAACGTAGATGCAA
TAGTTCAGAAATTCTCTGAGATGAAAAAACTTTCGAGAATTTGTGGGTGC
TTTTTTGCCTcgaattcaaaaaatatattttttgcatATCTACCTCGATA
GCCCACATGGAATGAGTGCAGTGGGAGCAATAGCTGAGCAGCCGGAAGAT
GAAGAAAAACCAGTTGTCATAGAGATAGAAGAAGAACGTATCAACAAACC
TTGGAATAACTGGATCAAAGCTGTCACTGTAGAAGCAGACACAGACGTGG
AAAGTGGTTAGTAAAACCTTTAGTACACAAAATACTGTTATTTGGAATCA
CGATAAATGAAGAAACTAAACATTTAATATAGAAGAGGCTTCTTTTAGGC
CTTTACAACCAAACATAATTTGGCGAGAAACTAATCGGAAAAAAATACTT
GATCTTTTGACAAATCCTTTTAACTCATTCTCTTCAGAGCCTCTTAATCC
TACTTCTTAACCTTAATTACGAATCAATCCTATCCTGGAGATTTCAATGG
CTTTCAGGGTCCATTGGCTCCCCTTTTTCTGTTCCGGGGATTAAAGGCTT
TAAAATGCAGTTAAAAAAGAGGACTTGCTTTAAAATGGTCTGCGAATTAG
TAGATAACTGGGTTAATGACATTGGGCGTTTGTGGTTTTCTGAAAAATNG
CGAATTAGTAGATAACTGGGTTAATGACATTGGGCGTTTGTGGTTTTATG
AAAAACACCATTTCCTTTTCAAGGTGGAGAACGCCCAATGACGCCCGATC
CAGAGGGTGGTTCATCAAACAGTACACTTCAAGTACAACAACAGGGTAAC
GCTAGAAAGAAATCATTCGATCGATGGGTACAAGAGAAAGCACAGGagga
acaagaaaaagaattacaaaagaTGAGAGAAGCTTATGAAAAAGAAAGAG
AGGAGGTATGGGAACTTTCTATTTTCTCAATTAGCACCCCTTTACTCACC
ATCAACCTCGCTCCCTGTGTATTATCGACTTTTTTATGCttaccatggcg
ttctaaatctacaaAACTTCTCGCTGCgttagttttttttcatttttttc
actccgtttcaatgcaacgacttcgaaATTTGAAACCCCACAAAATTGAC
GTTGCTGCACGCTTACTAGGTTTGTAGATTTGAAACGCCATGAtgtttac
tgatagcgctagataatacccttgTATTGTCTGCTTTCAGAATGctaaag
attacgtaattcgaTAACAAAatgtcagatttcatttgttccttGATTTA
AAACCTTTACGCACGTCACGTAAGAATTATGAAGTATTGctttgagaagt
tccccctctcagaggaGGAACTCTTACATCAGCCTTCTCTGTTGTTTAta
cagtaacgtaaataaagcctgggatacacggggaccaTATTGAGATCACC
TGCACCAAATGTTTTCATCAAATAGATGCCGaactttaaaattcaaaaat
atgatCTAAAAAAAGCATGGCGCGGTAATTAGCTTGAGGAAACATAGTAT
TAAAACTCCGGACACAGGCAAAGGCATCATTTCTAATAATATCAAAAAAC
GAGGCATTTGAGGCTGAAACTTCCTGAACTAAAGTCATATTCCATGGGAT
CTCTCACCTAAATTTATCCCCAATGGAAAAACCACATGATGCATTAAATT
GAAACCTTTTATTGAGAAGTTTATTGGAAACACTTGCATTTAATAATTAT
TTAAATTCAATACAATGTAACTATATCATACCACATACAGGAAGAGAAGA
AGGCATCACATCACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAAGAA
GATCGCGCTcgacaagaaaaagaaaaacatgaacaagaacaaaaagaaaa
ggaaagaaaagaagCTGAAGAAAAGGCTAAACAACAAGGTTGGTGGCTGT
CTGTAGACCTCTGTTTATAGCCTACTTGCAAGGTTTTGTGGCTGCCTGTA
GACCATTGTTTGTAGCCTACTCGTATAGGTTTAGTGAATGTCTGTAGAAC
TTTGTTTGTAACCTACTTGCATAGGTTTTGTGGCTGCCTGTAGACCTTTG
TTTGTAGCCTACTCGTATAAGTTTAGTGCTGCCTGTAGACCTTTGTTTCT
AGCCTACTTACAAGGTTTTGTGGCTGCCTGTAGACCATTGTCTGTAGCCT
ACTCGTAAAGGTTTAGTGAATGTCTGTAGACATTTGTTTATAACCTACTT
GCATAGGTTTTGTGGCTGCATGTAGACATTTGTTTATAGCCTACTTGTAA
AGGTTTGCAAGACTATGTCAGGTAGGTTAGATATTACAACAGTTATGAAC
TGTGATGTTTTAAGAAAATACTTAGTCAAGGGTAAATTTNATGATCTAAA
AAAAGCATGGCGCGGTAATTAGCTTGAGGAAACATAGTATTAAAACTCCG
GACACAGGCAAAGGCATCATTTCTAATAATATCAAAGAGAGAGGCATCTG
AGGCTGAAACTTCCTGAACTAAAGTCATATTCCATGGGATCTCTCACCTA
AATTTATCCCCAATGGAAAAACCACATGATGCATTAAATTGAAGCCTTTT
AGTGAGAAGTTTATTGGAAACACTTGCATTTAATAATTATTTAAATTCAA
TACAATGTAACTATATCATACCACATACAGGAAGAGAAGAAGGCATCACA
TCACGGCAAGAGTTTTGACGATTGGATGCGTGAAAAAGAAGATCGCGCTc
gacaagaaaaagaaaaacatgaacaagaacaaaaagaaaaggaaagaaaa
gaagCTGAAGAAAAGGCTAAACAACAAGGTTGGTGGCTGTCTGTAGACCT
CTGTTTATAGCCTACTTGCAAGGTTTTGTGGCTGCCTGTAGACCATTGTT
TGTAGCCTACTCGTATAGGTTTAGTGAATGTCTGTAGAACTTTGTTTGTA
ACCTACTTGCATAGGTTTTGTGGCTGCCTGTAGACCTTTGTTTGTAGCCT
ACTCGTATAAGTTTAGTGCTGCCTGTAGACCTTTGTTTCTAGCCTACTTA
CAAGGTTTTGTGGCTGCCTGTAGACCATTGTCTGTAGCCTACTCGTAAAG
GTTTAGTGAATGTCTGTAGACATTTGTTTATAACCTACTTGCATAGGTTT
TGTGGCTGCATGTAGACATTTGTTTATAGCCTACTTGTAAAGGTTTGCAA
GACTATGTCAGGTAGGTTAGATATTACAACAGTTATGAACTGTGATGTTT
TAAGAAAATACTTAGTCAAGGGTAAATTTGATATTGATTATGGTAATATC
AGCAGGTAATCTGTCAAATGTAAAAGACCCCTATAAAGCGCAGAGAAGAG
GGTTAGTGGTTTTATTCCAAAGTTTGTATAGAATGGTAATGTCCTTTctt
tctaaatattttcaaaaaagtaccCGAgtaataacttttgacttattttt
tatctttacaACCCTCGACTACCAGTACACTGGGGTCGTTTATTACATCC
GTTTTATACAGTAATGTGCATGTTATTTGATAATGCGACATATGCCACGT
GAAAATGTTAATAGTTTATACAATAGTGATATTATTAACGTCATAAGTTC
TCCTTGCCATACCCCTCTCTTTCTCTTATATTAAGCCGTCCAGCGTGCTA
GACTACCCTTCAAGGGACTTCCTAAAGAAGGTGAAAGCCTTGGTTAGGGA
TCTCTAGATTCCATTCTCCAGGGGTGAAAACATAAGTATCTCAACAATGA
TTATTATCATCTTAAGGTAAATCATTCGAGAAATGGGTGAAAGAGAAGGC
AGAGTATGACCGTCTATTGAAACAACAACATGAACAAGACgctaaagaaa
atcaaaagcaaCAGAAGACGTTGAAAGGGAAAACTTTTGAAGATTGGCAA
AAAGAAATGGAAGTAAAACGAAAGCAGGATattgaagaaaagaaaacgAA
AGAGACCAAGGTATAAAACaggaatctttaacctttctcaagcaagaaaa
agtgaagccttaaaaagaTTTGCGCTGTATTTAGAATGACGTATTGAATC
TAGACTTTTCTCcgtttttacatatttttcagAATCTGACGAtaggtttt
actttcaatctggtgtttgtgtgaaaaccacgcgggtcacATGTTTTTGA
TGGGAAAGTGGATTCATTTCCCATCTAACAGTTTCGGATCTAGCCCCTTC
GGAGCTTTGAGATCAATGGTCAGAGCAAAGTTCTTTGTCTCAGACGGGAA
AGGAGTTTAAGGCAAAACTCTTCAAATTTTACAGACTGTTTTTTCATTTG
GAGATAGAAAAGCTCCTTTTTGCTTAGACGGAAATCCGTTTGACACGGGA
GACTGATAAAACGACATCATTCTCTACCGTAGAATTGACGTTGGACCCTA
AACTGATCGTTTATGACTTAAAAGAAATcgtaataaaaacattttcctaA
AAGATTGAACGTTCTCAGCAGCGTAGATACGAGTGAAGGAACATATTGCT
TAGGAGAGCAGATTGAAACGACAGAGTAATTATGTTTTTATACTACGAAT
AGGTAAGTGCTTTGttgtaaaaatctgctctcctacgcagatcgttcttc
acccctgtctacgctTCCGGTTCTtttcctaaatattttcaggaaaaggA
AAAGCAAGAAGAAGCAAAAGTACGGCGCCGAAAAGAATCATCGGCAAAAT
TCCAACAATGGTTACTGGATAAAGAGAAATTAGCTTTGGAAAAAGAAATG
CAAGAATTGAAGAAACGAAAAGTATCGACCGCTAAAAATGCTACACGTAA
AGCAAGTACAATGAAAAAGCCTGCTCCGAAATAATAACATTGTGTCTTCA
tcaaagagaaaattttgatttcataggAATCCACTGAAACATGTAGAACC
TTGACTGCTAATCTGCTTAATCGATCAACGGCTAAGTCAAAGTAAGGTAT
TGAACCATACAGGTTTTACTGTAAATAAATATTACTGATTTTAAGAATTC
GATTCCTTCATTATCAACTACTGTTTGTTACCTTCTGGTGTCATGGTAGC
ACCTAATTCCCTAAACTGGTACGGTGAAAATGTAGAGCTTTTCAGTTTGT
GACGATTTTTTCCAATAGCAAATATCGATGCACCAAAAGGAAGAAAATCA
TTTCATAAGCTAAATTTATTCTGCTTTATGCAGTGGCCAAAGCGAAGTTC
TTTTTGTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049484-exon-scaffold_16-1491911889:254830..255074 | TCONS_00049484-exon-scaffold_16-1491911889:254830..255074 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:254830..255074 | TCONS_00049484-exon-scaffold_16-1510915933:254830..255074 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:254830..255074 | TCONS_00049484-exon-scaffold_16-1575043694:254830..255074 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:256693..256938 | TCONS_00049484-exon-scaffold_16-1491911889:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:256693..256938 | TCONS_00049484-exon-scaffold_16-1510915933:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:256693..256938 | TCONS_00049484-exon-scaffold_16-1575043694:256693..256938 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:257131..257285 | TCONS_00049484-exon-scaffold_16-1491911889:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:257131..257285 | TCONS_00049484-exon-scaffold_16-1510915933:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:257131..257285 | TCONS_00049484-exon-scaffold_16-1575043694:257131..257285 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:257753..257934 | TCONS_00049484-exon-scaffold_16-1491911889:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:257753..257934 | TCONS_00049484-exon-scaffold_16-1510915933:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:257753..257934 | TCONS_00049484-exon-scaffold_16-1575043694:257753..257934 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:258770..258917 | TCONS_00049484-exon-scaffold_16-1491911889:258770..258917 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:258770..258917 | TCONS_00049484-exon-scaffold_16-1510915933:258770..258917 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:258770..258917 | TCONS_00049484-exon-scaffold_16-1575043694:258770..258917 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:260746..260939 | TCONS_00049484-exon-scaffold_16-1491911889:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:260746..260939 | TCONS_00049484-exon-scaffold_16-1510915933:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:260746..260939 | TCONS_00049484-exon-scaffold_16-1575043694:260746..260939 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1491911889:261622..262191 | TCONS_00049484-exon-scaffold_16-1491911889:261622..262191 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1510915933:261622..262191 | TCONS_00049484-exon-scaffold_16-1510915933:261622..262191 | Clytia hemisphaerica | exon |
TCONS_00049484-exon-scaffold_16-1575043694:261622..262191 | TCONS_00049484-exon-scaffold_16-1575043694:261622..262191 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_16 | supercontig | scaffold_16:254830..262191 + |
Blast
The following BLAST results are available for this feature:
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