TCONS_00049475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049475
Unique NameTCONS_00049475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049475 ID=TCONS_00049475|Name=TCONS_00049475|organism=Clytia hemisphaerica|type=transcript|length=2865bp
aaattcAAGAAGAgtagattttaataaaaatctgtaaaaattccaaagaa
aaattaatGGAAAGTATCTGTGTATGGTCAACACACTTAACAAAGTCCAT
GTAAAAATCNGATTCTAAAGAAAAATGTATGGAAAGTATCTGTGTATGGT
CAACACAgttaacaaagtccaaaaaaaataacTACTAATCATAATGATTT
AATATCTGCTAGAAAATTTCAAGCTAtctacaaaacaaacaaaaacataa
aaatatgcCAATAAAACATTTGGAATAGAAAAATTATTCGATTGTTATTC
GTTTGAATTCCTTGGAGGAGCAGGAGGTATTGGTGGTAACCCCTGGCGAC
GTCGTTCAGCTTTCAACTTATTGAATTCTTTCTTACAGTTGCGGTAAGCT
TCAAAATATTCCTCACATTTGTCTTTATCATAACCGTTATCTGAGAGACA
TTTGTAAGACGCATTAGCCTCATCCAAACAAAAATTAACACCACGGTCAG
TCCATTTACGCGGGGTACCTGGACGTTGTGGTGTCCTTGCCTCTCCAGAC
ATCTATTTGcacaaattatatatttttgttgtttttactttaatttgtgc
tgaaagtaaaagaaagagaagcataatataataaatataacaaaaaaaat
gGTCAACTGTTCAGGTTTTTAAAGACACTTaacataaaatattgaaatac
aaaaacaaacagaaaaggTAGAAAATTctcaacaaaaaaaagttttatgt
gataaaagtgacaaaaaaggtatttttttgaataaaacttTAGGGTATCC
ATGACTCgtaacaaaatcaatttttttatcaattaaaaAATGTTGTATCT
TCTTAAGTATAATCTAAAGTGTggttaaataaaataataataataaaaac
agCAATGACACCAATGGTGGATATGTCCCTTGTATATTCTGTATCTGAGA
ATACTGAATAAGCCTATTGCAAAATCAAAGTCACATTATAGTACATACTC
TATTGTTTATTCATATCCAAGCAATTTTGAATTGGGTTGAGTGAAAAAAG
TCCCACGTATATTGTAGATCTAAGAATATTGAATAAACGTATTGCAAAAT
CAAAGCCACAATAGCACTCTATTGTTTATTTAAATCCatgcaattttgat
ttttggtaaacTAAAAACAAGACATCAAATGGCTAAAACATCAGCTGCAA
TTTCATGACTGTGTTGTGTTTGCAAGTCACtcagtttctttttcaaaaca
gaaAGTCCAGACAAGATAATTCTTTCAGGTCTCAGTGACCCAGATGTTTC
GACATTGAAAAAGAACTTGTTTGGTTTAGCACCAACATCAAAATCACCTT
GTGTTTGATCCTCGTCAAGTTGTGAATATTCACTTTTAGGCCATTCCTCT
GGTCTTGGATATGTTGTATGTCTCATCACATTATCAGGATCGTACTCAAA
AGCCACTCCAGCTGTTGGATTCCATTTGGCATGCTCTTTACCAAACCCTT
TTTTTGCATAAGCACGTAATTTCAGTTCTTGACCTTTTCgaagtttcaaa
ataatgatATCGTTATTTTCCTGCATGTCACTATCATCATCTTTGTTTTG
AGAAGTAACTGGAACAATTTTTGGGTTAGCTGATATCAAATCACGGCTTG
TTATACGTCTTGTTGTATCTTCAGTGCATTTGACCTCAAGAGTGAATTCT
ACAGAACACTCAGGGCAAAAATCAATACATGTGCAATCTCTGGAGTAGCT
CATCCCTTCGACTGATTCATCACATGTTAAAGGAATCAAACCAACACGAT
GGGCTATAAATTCATCATGTAGTACTGaagtattattttcaatttgaacc
CAATCAATTGCAATAGTTGGGACTTCTNTGAATAAACGTATTGCAAAATC
AAAGCCACAATAGCACTCTATTGTTTATTTAAATCCatgcaattttgatt
tttggtaaacTAAAAACAAGACATCAAATGGCTAAAACATCAGCTGCAAT
TTCATGACTGTGTTGTGTTTGCAAGTCACtcagtttctttttcaaaacag
aaAGTCCAGACAAGATAATTCTTTCAGGTCTCAGTGACCCAGATGTTTCG
ACATTGAAAAAGAACTTGTTTGGTTTAGCACCAACATCAAAATCACCTTG
TGTTTGATCCTCGTCAAGTTGTGAATATTCACTTTTAGGCCATTCCTCTG
GTCTTGGATATGTTGTATGTCTCATCACATTATCAGGATCATACTCAAAA
GCCACTCCAGCTGTTGGATTCCATTTGGCATGCTCTTTACCAAACCCTTT
TTTGGCATAAGCACGTAATTTCAGTTCTTGACCTTTTCGAAGcttcaaaa
taataatatcgTTATTTTCCTGCATGTCACTATCATCATCTTTGTTTTGA
GAAGTAACTGGAACAATTTTTGGGTTAGCTGATATCAAATCACGGCTTGT
TATACGTCTTGTTGTATCTTCAGTGCATTTGACCTCAAGAGTGAATTCTA
CAGAACACTCAGGGCAAAAATCAATACATGTGCAATCTCTGGAGTAGCTC
ATCCCCTCGACTGATTCATCACATGTTAAAGGAATCAAACCAACACGATG
GGCTATAAATTCATCATGTAGTACTGaagtattattttcaatttgaaccC
AATCAATTGCAATAGTTGGGACTTCTGAAATGAAGATCCTTCTCAAACCA
TTTGCCATGGACAAATCAGTATCCTCAAGTgtgaatttgatattttcatc
acTCAGTTctgatattttgacttttggttGACTAGCGTAAGGCATCTTTC
TCAGGAGGGTTCAATGATAATTGTATATGGTAGTTTTAGCTGAAACATTT
GCTCACATTTCAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_16:98557..109675+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049475 ID=TCONS_00049475|Name=TCONS_00049475|organism=Clytia hemisphaerica|type=transcript|length=11119bp|location=Sequence derived from alignment at scaffold_16:98557..109675+ (Clytia hemisphaerica)
aaattcAAGAAGAgtagattttaataaaaatctgtaaaaattccaaagaa
aaattaatGGAAAGTATCTGTGTATGGTCAACACACTTAACAAAGTCCAT
GTAAAAATCNGATTCTAAAGAAAAATGTATGGAAAGTATCTGTGTATGGT
CAACACAgttaacaaagtccaaaaaaaataacTACTAATCATAATGATTT
AATATCTGCTAGAAAATTTCAAGCTAtctacaaaacaaacaaaaacataa
aaatatgcCAATAAAACATTTGGAATAGAAAAATTATTCGATTGTTATTC
GTTTGAATTCCTTGGAGGAGCAGGAGGTATTGGTGGTAACCCCTGGCGAC
GTCGTTCAGCTTTCAACTTATTGAATTCTTTCTTACAGTTGCGGTAAGCT
TCAAAATATTCCTCACATTTGTCTTTATCATAACCGTTATCTGAGAGACA
TTTGTAAGACGCATTAGCCTCATCCAAACAAAAATTAACACCACGGTCAG
TCCATTTACGCGGGGTACCTGGACGTTGTGGTGTCCTTGCCTCTCCAGAC
ATCTATTTGcacaaattatatatttttgttgtttttactttaatttgtgc
tgaaagtaaaagaaagagaagcataatataataaatataacaaaaaaaat
gGTCAACTGTTCAGGTTTTTAAAGACACTTaacataaaatattgaaatac
aaaaacaaacagaaaaggTAGAAAATTctcaacaaaaaaaagttttatgt
gataaaagtgacaaaaaaggtatttttttgaataaaacttTAGGGTATCC
ATGACTCgtaacaaaatcaatttttttatcaattaaaaAATGTTGTATCT
TCTTAAGTATAATCTAAAGTGTggttaaataaaataataataataaaaac
agCAATGACACCAATGGTGGATATGTCCCTTGTATATTCTGTATCTGAGA
ATACTGAATAAGCCTATTGCAAAATCAAAGTCACATTATAGTACATACTC
TATTGTTTATTCATATCCAAGCAATTTTGAATTGGGTTGAGTGAAAAAAG
TCCCACGTATATTGTAGATCTAAGAATATTGAATAAACGTATTGCAAAAT
CAAAGCCACAATAGCACTCTATTGTTTATTTAAATCCatgcaattttgat
ttttggtaaacTAAAAACAAGACATCAAATGGCTAAAACATCAGCTGCAA
TTTCATGACTGTGTTGTGTTTGCAAGTCACtcagtttctttttcaaaaca
gaaAGTCCAGACAAGATAATTCTTTCAGGTCTCAGTGACCCAGATGTTTC
GACATTGAAAAAGAACTTGTTTGGTTTAGCACCAACATCAAAATCACCTT
GTGTTTGATCCTCGTCAAGTTGTGAATATTCACTTTTAGGCCATTCCTCT
GGTCTTGGATATGTTGTATGTCTCATCACATTATCAGGATCGTACTCAAA
AGCCACTCCAGCTGTTGGATTCCATTTGGCATGCTCTTTACCAAACCCTT
TTTTTGCATAAGCACGTAATTTCAGTTCTTGACCTTTTCgaagtttcaaa
ataatgatATCGTTATTTTCCTGCATGTCACTATCATCATCTTTGTTTTG
AGAAGTAACTGGAACAATTTTTGGGTTAGCTGATATCAAATCACGGCTTG
TTATACGTCTTGTTGTATCTTCAGTGCATTTGACCTCAAGAGTGAATTCT
ACAGAACACTCAGGGCAAAAATCAATACATGTGCAATCTCTGGAGTAGCT
CATCCCTTCGACTGATTCATCACATGTTAAAGGAATCAAACCAACACGAT
GGGCTATAAATTCATCATGTAGTACTGaagtattattttcaatttgaacc
CAATCAATTGCAATAGTTGGGACTTCTNTGAATAAACGTATTGCAAAATC
AAAGCCACAATAGCACTCTATTGTTTATTTAAATCCatgcaattttgatt
tttggtaaacTAAAAACAAGACATCAAATGGCTAAAACATCAGCTGCAAT
TTCATGACTGTGTTGTGTTTGCAAGTCACtcagtttctttttcaaaacag
aaAGTCCAGACAAGATAATTCTTTCAGGTCTCAGTGACCCAGATGTTTCG
ACATTGAAAAAGAACTTGTTTGGTTTAGCACCAACATCAAAATCACCTTG
TGTTTGATCCTCGTCAAGTTGTGAATATTCACTTTTAGGCCATTCCTCTG
GTCTTGGATATGTTGTATGTCTCATCACATTATCAGGATCATACTCAAAA
GCCACTCCAGCTGTTGGATTCCATTTGGCATGCTCTTTACCAAACCCTTT
TTTGGCATAAGCACGTAATTTCAGTTCTTGACCTTTTCGAAGcttcaaaa
taataatatcgTTATTTTCCTGCATGTCACTATCATCATCTTTGTTTTGA
GAAGTAACTGGAACAATTTTTGGGTTAGCTGATATCAAATCACGGCTTGT
TATACGTCTTGTTGTATCTTCAGTGCATTTGACCTCAAGAGTGAATTCTA
CAGAACACTCAGGGCAAAAATCAATACATGTGCAATCTCTGGAGTAGCTC
ATCCCCTCGACTGATTCATCACATGTTAAAGGAATCAAACCAACACGATG
GGCTATAAATTCATCATGTAGTACTGaagtattattttcaatttgaaccC
AATCAATTGCAATAGTTGGGACTTCTGAAATGAAGATCCTTCTCAAACCA
TTTGCCATGGACAAATCAGTATCCTCAAGTgtgaatttgatattttcatc
acTCAGTTctgatattttgacttttggttGACTAGCGTAAGGCATCTTTC
TCAGGAGGGTTCAATGATAATTGTATATGGTAGTTTTAGCTGAAACATAA
TGTCAAAATGGTCAAGGTTCTAGGCTAAAAGAGTTTTTCCAGAAACCAAA
TTAAGATAAACCCAAAAACCCTCTGAGCTTCACAAAAGCAGAtagtttac
agaaatctaaattcaaaaaaattcaagaactgtttttgaaacatttgaaa
TGAATAGGGTTGGCAGTTTTGAATAGCTATTTTACCAAAAACCAGACTTA
CGTCCTGTAGTTGAATACTTTTGAAAACCTGTTCTCTGTTATTATCGTGT
GTACCTGGGTTGGTAAAATTGCAACATTCCCAATTAAGATTGATTGTTGC
AATGtaaaccaatttttttcaaaacacaagCAAAATCAGGTTGAAAAAAA
GCAGCCTTACtgtaggctgcacacatcccctctgatatgatagGGAATGC
ATATTGTCTACAATATTTCTGTCCCAACTTACCACTGTAAACCACCAAAA
CTTAACACTGTTGCAGAATTTGACAATGCAGAAATTGCAGAATTTTTCAG
CACTGCAATTCTTTACAATTTCCATCAGTTTTCAGAACTGACGACTGATG
TGGTGGTTGGTGGAAACATGCTGAATGTAATTGAATTTGNACTAACGACT
GATGTGGTGGTTGGTGTAAACAGGCTGAAAGTATTTGAATTTTATCTGAT
CAAAATCAGTCTAGGATTAGGAATCCTCTAAATTATACACTTAACTTCTG
AGATCTAAACTCTcaattaccgtcaactgctctaatttGAGACGATTGGT
CGAATTTGGGACTGGTTGAAATCTTGCCTGTATTTTCAACTACTGtgaaa
tctctttgacaactccatcaagtttatcaatcatactttctgtcataaca
ataacatgtcacgataactttcactgtgATAGCgagccctttttaacttt
tttgtttgaattcaaaaaatgaccggacgccgattggagaattacaGAAC
GCCTGCCGCCTAACCACCTATTGCtcaatgggattaacaaatagcgagtg
tgtaacttgccactaatttggtcttcttcgttccagacattcgcgtgtgt
tccactacaaatttttttcatatttctatttaaaagcctactcggtgcga
aagagaagtcgtgtattttttaatacgccgttcattaactcaaaatttca
tttttttttctttattgaaacaaagacaCATGTACACTACAAACATAAAT
tagaaaacattacttaaacataaaatatagtccctccccccgctaggaac
taacgttatatcgtcagaggtactagacttcttggagaaggaagctacaa
ttgttaggtaaaaaaagcctaaaataaagcaccactaaaccttccagttt
cgttaagaaattcaacaacagaacaaagaatagatttatttagatttgaa
tcaaactttcatccccatactgccccatataataaaagccgacagaaaaa
aggagggttaagtgTATGAAAAAcaatgcctagggtctgaagtttgtcga
acaaagattgtcttgcatgggaatatNAGGGTTAAGtggcggatgaaaaa
taatgcctagggtctgaagtttgtcgaacaaagattgtcttgcatgggaa
tatatagagcagtgcagaagaaagtgctgaatgttttcaacagagttagt
tcggcaaccacagaaagggttgtcattcttctagcaaagcgcctgtcagc
aagactttcaagaccaagttctgaatatagtttttcttgagacgttccac
gaaaacagcctgttatagctaaacaggcattatattgaatagacTCAAGC
TACTGCACAAAGGTAGCATTTCCTGGGCAGTCATATACAatatcaccata
atcaagatgaggcctaatgaaagatttataaatggttGGTAGAGATCTCC
TAGGCACATACTTGCGAAGTCGGTTAATAAGACCAATTCCTTTATTGGCC
CAGATTGGCCTTTTGTATCTTCTCATTTAGATGGCGATCAAAAGAAAGAA
TCTAAGATTAGACCAAGATGTTTCTGGTACTCAATGGTCGCGATATTAGA
ATTATTAAAGGAGATTACTGGAGTGAGTCTACAGGTAAAATAGACGTCAA
CAGCTTGCTTAGATGGGTCAGggttaaaagacatcttccattgatgagcc
caaTCAGTTATCCTGGAGAGATCTCTGTTAAGTACATCAAGGCTCAAGAG
TTGATCAATCACAAGAGAGAATAAAGAGGTATCATCGGCAAAGATCTTGg
gttttgactcaaggttttttggaagatcattaatataaattaagaaGAAC
AATGGACCAAGAATCGTGCCTTGAGGTACCCCTGCATAGATTAGCTTCCA
CTCAGATGTTTTACCCAATCAACACAACTCTCTGATGCCTATCGTCAAGA
AAGCTGCGAATTAAGGAAAGCAACGGTCCAGTCACCCCATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATATCTAAAAACACCCCCCTGGTATCTAGAGAAGGATCTT
TGTCAAACCCTGTATAaatatcatgcgttatggataacaactgagaaatg
caggaatcccatgttttgtcagatagtcccaagttagagcagttgacggt
acatggCTATCAAAATTGTAGAATTTGTTAAGGGTGCAATTATATACACC
CTTATTACTATTTGAATAAACGGTAAATGTGTAATTGCATGCTTAGGCTG
CGGTCACAAATAAGTTGTGTTTGCGTTctccgaccgactcactttctatt
ttcaaaatctgacCCTTTTCTACTTGGAAAGTCGGAAAATTTGTCCAATT
TTTAGCGATattatttaaagaattttgtaGATTCAGCTTAGCCAGCGTTT
TGATCATTGAGTGTTTTTAGAGACACTCATCGAGcaattttttatagatt
ttttgctttaaaaagttNGAGACACTCATTTTTCACTcacttatttttta
aagattttttgctttaaaaagcgcTTTTTGTGCGGTCGTGATATGTAAAA
TAATCACATTGCAGCTTGTGCGCTCAATGATTCTTTGTCGCCTTAACAAA
CCTATGCTCAGAGCGCATTTTTCTGATGATATTTTAGCACCGCCGGACCG
CCTATATTCAGAgtgcatttttctgatgatTTAAGATGTCGACCAATCGA
CCGACTCATATTTTGgggctggaaaattttttttggaccgaTTTTTTCCA
CGCTTAGCGTCATTCCAACACTAATTAAAAAACCCACCCACCCCCTACCC
TTAGGGGTCAgtcacaaattgattttaagttagaagaacgtcaattgacg
tatatgggtgggtgggttaaaggttgttgacgtttttcagaaacatcaaa
catttcattctcgccatgtttctgtttgatcgcttcttttgttttgaaaa
ccaaaactaacggcccgatgtttatgtcttttctttgtttgacggcccga
acggcccttgaatttttgcagatcgccgttctttctgtcgctacatacta
cggagataattaattacgggaattttgtgaacaagtttagaaattatctc
cgagccgtagtgaaaatcaagatggctgacgaaacagcaaagaaggcagt
ttttatcaattttcgggatatcaaggtgtttgacgtttttgggtgtgggt
gggtgggtcagcttttaaaacgtcaattgacgttcttctaacctagaatc
gatttgtgactgacccctTAGCGTCATATTATAAAATATACCGAAAATCG
atgaaaaccttttttccattcTCACTTCTGGTATTGATGTTCCACTGCCA
GAGACGTTTCTTCTTCCTTCTGCCTTGtacattttgcttgtttttcgaGT
AGTGGTTTCTGACTTTTACACAGATTGGTTCCCAGACCCGCATAAGTTAT
GACACGGGAAAAAAAAGCCCCAAACTTTTTTAACATAATGAGTGTCTCCG
GTATTTTTTTACTATACCGGTTTATTCTTGATGCCGTGAAAAAAAGAGTT
AtagttttctggaaatttgatcATCTCTTGGGCCTCAAAAAACGATATCT
CTAGATTTTCTTAGCGTCACTCGATCTAACCCACCTACCCTAAAGCATTG
GAATGACGTTAAGCGTGGgaaaaatcgatatgtgagtggccccttcatgg
gatcatcccccccaggaagatgggggggaatcagattttggtgccagggg
ggaagtgaaaatttcaagcttgNtcgggtaacttgcatcagtggaggcta
acatgcatagccctcaaatgaatgacctggctggtcattaaaatacaact
acgcagctccgctcgcagctctacagtactctaccatttttgttttgatt
tatttttgtattttaatgaccagccaggtctttcatttgagggctatgca
tgttagcctccactgatgcaagttacccgatctcacggtatagacttaaa
cttgtatatcaggattacgggatttcgagtacgggccgattttactttcg
ttttgagtggtttcattttcaatttcaagccaacatcttagcaacggggt
gctcgcccatagttgtACAgggatttgtgcaaaaaattaaacatagaaaa
ttttccaaatcccccattttgattaatgcaatgaaaaatgaaacttttct
atgtttcacttttttggcacctattcttcaaaatgaaaatatttaagatt
ttaagttcttcttttattcaatgattttttacggcacttttttgacaatc
taactctcgcatcaaattctcgctttcttcagtaaattgaagatgagaaa
aaacctaaacCATGGATtacagattgaaacaaatatatgaagggtggaaT
TTTTCAGCCGTCCaacgtgcaaggcactgaagggccatgggtgccaaaaa
gaagagGGCCGTTTGATTCATTGGtcgaaatttgataaacagctgcaaag
gagcgctgggaagcaatctgttgaagagaccacttttgtttttgttgcag
atttctatgaaaacttctctcagggattacttgtcaatgtacgtACACAT
GTGGTGTGtaaacttgtcagcattgtactgtcaactgctctaacttggga
ctatctgacaaaacatgggacggcaattcggccaccatttcaccgaacct
ccaaagtcatttaatttgagttaaggaacggcgtatttaaaaatacacga
tttctctttcgattttacagtaagtgaaaatacagaccagaccagatatg
caacagtcccatgtttcgaccaatcgtccgataagttagagcagttgacg
gtatgttgtaaaggaaaagataaaagaggtaagacgtagcttcagccagg
tttctagcagttagtcacactaggaaattaagctttcagaaaaaacaacc
tcagtcatctacaggatacatttcaacaacaaggatgagagttacctgaa
tcaagttcgcaagacaatatcaattaaaacttgaaagttggaaacaaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGTTTATACGCTAaattaaaaacaattccgcacatgtaaatgggtcattg
tttgaggtccggcaaaatttccgggagatagcctatccggcggtgcgcaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNattattgaaagtttgtctcggcctttttataatgagcg
agacatacgttctctgattacgcaattttcatattgacattttcgaggca
ttttgatgtaactggtaagcgatatagcgttttcgcagcattaatctttg
atactcaTTTTGGCGGGatggacgctagtgtgactaactgtctagctccc
cccaacaaagtaaagtccccccaacaatttagcttccccaaaaaaattgc
cttgtgctaggtcccctaacacttggggaaaaaacaaaaacattttcctc
CCGCCCCCGTAGaaagaagtcaataaaaaatatatgcgagtacggtactg
ataaatgaaaacttaaattttacttgtatattaatatttatgttaaccaa
tcttttgctttttatattcgATTTAATAGTATGATAAGCCATCTTTTAGa
attagctgaacagccccagagtctcagtcagatTATCTAGGTTTccccca
acaatctaggtccccccaaatattttggtaattttagcccccaggctctt
taaaggccaaaatatttcttagccccccccccaaagtaAGGGGGCTGAAG
CTATGTAAGATTAGCCTAGTTTATAATCccgatataggagtttaagttta
gactgtctATGCTATATCATCTAAAAGAACCTAAAAGAAAACTTCAtgga
tgaaaaaataatttgtttttgaCTTTCCCCGGCGCACAACTAGATTCTCG
TTGTAAAATTTCCTACAGGAGGACATTTTTTCTtagatggttaattttca
agggcCTTTCAGAGGTTTACCTCTCGTAAAAAAATTCAGCGATTAAACAC
ggctttataaaaaaatgcgcAAGAGAATCCCTTTGAGGTATTTTGAAGCT
AAAAGCCTAAGAGCACGTTCTAAAAGAAGCAGAAAACACACACTTGGTAC
TTACTGCTTACATGAAACAGTTTGAACAGAAAGTGTTTCTATTCCATGCA
GTAGCCAGGTAGCAGAGTCTGAgctaatgaaatgaaatttcacTTGAAAC
ATTTGCTCACATTTCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031389XLOC_031389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049475-exon-scaffold_16-1491911889:98557..101402TCONS_00049475-exon-scaffold_16-1491911889:98557..101402Clytia hemisphaericaexon
TCONS_00049475-exon-scaffold_16-1510915933:98557..101402TCONS_00049475-exon-scaffold_16-1510915933:98557..101402Clytia hemisphaericaexon
TCONS_00049475-exon-scaffold_16-1575043694:98557..101402TCONS_00049475-exon-scaffold_16-1575043694:98557..101402Clytia hemisphaericaexon
TCONS_00049475-exon-scaffold_16-1491911889:109657..109675TCONS_00049475-exon-scaffold_16-1491911889:109657..109675Clytia hemisphaericaexon
TCONS_00049475-exon-scaffold_16-1510915933:109657..109675TCONS_00049475-exon-scaffold_16-1510915933:109657..109675Clytia hemisphaericaexon
TCONS_00049475-exon-scaffold_16-1575043694:109657..109675TCONS_00049475-exon-scaffold_16-1575043694:109657..109675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:98557..109675 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.2638	57.4284	35.595	32.4447	4.6536	4.80708	11.2974	11.3322	17.6417	13.6006	10.4587	15.1492	10.026	8.0976	17.2046	16.536	26.4093	24.3263	7.32853	8.41489	21.2619	20.7592	46.1362	38.3969	11.3834	11.2323	19.9235	15.6874	22.6488	22.5913
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR009025RBP11-like_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
Blast
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BLAST of TCONS_00049475 vs. Swiss-Prot (Human)
Match: RPB3 (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 1.668e-132
Identity = 194/274 (70.80%), Postives = 240/274 (87.59%), Query Frame = -2 
Query: 1977 MPYASQPKVKISELSDENIKFTLEDTDLSMANGLRRIFISEVPTIAIDWVQIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVEFTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDD-SDMQENNDIIILKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPEEWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIIXXXXXXXXXXXXXLQTQHSHEIAADVLAI 2795
            MPYA+QP V+I+EL+DEN+KF +E+TDL++AN +RR+FI+EVP IAIDWVQI+ N+SVLHDEFIAHR+GLIPL  D+ V+ + YSRDCTC +FCPECSVEFTL+V+C ED TR +TSRDLIS +P+++PVTS+N+D+D +D  E +DI+I+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGVAFEYDPDN +RHT YP+PEEWPKSEYS+LDED++Q  +D   KP +F++NVE+ GSLRPE I+LS LS LKKKLSDLQTQ SHEI +DVL I
Sbjct:    1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTI 274

HSP 2 Score: 343.584 bits (880), Expect = 9.889e-110
Identity = 171/239 (71.55%), Postives = 206/239 (86.19%), Query Frame = -3 
Query: 1178 RLF-XEVPTIAIDWVQIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVEFTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDD-SDMQENNDIIILKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPEEWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIIXXXXXXXXXXXXXLQTQHSHEIAADVLAI 1888
            R+F  EVP IAIDWVQI+ N+SVLHDEFIAHR+GLIPL  D+ V+ + YSRDCTC +FCPECSVEFTL+V+C ED TR +TSRDLIS +P+++PVTS+N+D+D +D  E +DI+I+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGVAFEYDPDN +RHT YP+PEEWPKSEYS+LDED++Q  +D   KP +F++NVE+ GSLRPE I+LS LS LKKKLSDLQTQ SHEI +DVL I
Sbjct:   36 RVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTI 274
The following BLAST results are available for this feature:
BLAST of TCONS_00049475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB31.668e-13270.80DNA-directed RNA polymerase II subunit RPB3 OS=Hom... [more]
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