TCONS_00049471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049471
Unique NameTCONS_00049471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049471 ID=TCONS_00049471|Name=TCONS_00049471|organism=Clytia hemisphaerica|type=transcript|length=1656bp
AGATTTTCAACTGTTCGACAGCACTTTTACCCAGAAATCTTTATCTGACA
gatCCACACACAATGGAAACAAAACTGATTGTTAAAAACATTCCAAATAA
ATTTAGTGAGCAAGATAAGATTGAGTTTTTACAATTATTTGGTTGTCAGA
ATGTAACATGCCTAAATGGAAAATTGAAAAGCTGTTGCTTTGTTGAATTT
CCTGATGCTGAATCCACCAAACAAGCGCTGGATGTTTTACATCAATTTGA
GATATTAGGAAAGAAACTTGTGGTAGAATATGCTAAACCTATTCATCAAA
CAACAGCAAATGAAATTGaagctcaaaaagtttttgatagaaAATCATTT
TTCCTTGACAAAGCAGGAACAAAAGATTCAGCAGATAAAACTAATTTGGA
TAATGAGAATGATCTATCACAATGTGGATTAGCTCCAAGCTTAGGGTTAA
ATCATAATTTTCCATCTCACTTACATTACAAATACCCTGAACCTAACGTA
CAAATATTAACAAATATAGCTAATGCATTAGCAACTGTTCCAAAGTTTTA
TACCATGGTTTTGAATTTGATGAATAAGATGCATTTACCACCCCCATTTG
CTGGTTTGACTCCGACTCCACCTCTACCAGATAACAAAGTCAACATGCAA
GATGCATCAGTCGATACCACAGATTTGGCAAGTTATTGTTCTAGTGAAGA
ATCAGAACTTGAGAGTGAtagcgaaaataaaaaacatgaaatttacaTCA
ATAATCCAACAATCAGTCAACCTATACGTAAGAGGAAAAGGTTGAGGGCA
GCTGCTAGTAAGGACCAAGAAAAGCTGCAAATGAATAAATCTGTTAAATC
AGATCTTCAAACTGAATCACCTTTTGAATTGACAACATCAGTTAAAAAAT
TGGAGTTCAAACTTGGAAATAGTATAAAAGATGCAGTTGAAAAGAAAGCT
GCACCACCAGTTCATTATAGTATTTTTGATGAAAGAGGCCAATTTGGGAA
AATTGAACCTGTTGCTAAAGTTGTTAAAGTAgatgagaaaattgaaaaac
atgtGGTAATGCCTGATGTTAATGAAactatttcttttgaaattgaagGA
CAAAATATTGCAAAAGTAGAACAAAGTACAATAGAGTccgaagatgaaga
agaagaagaagataacGCTGATTATATTACAGCAAAAGtgttgaaagaaa
ataaaatatcttctgaagaaattcttaacatgaaccaattcaaaaattat
aaaggAGGTGACAAAACCAATCGTTTATATGTCAAAAATATTGGAAAGCA
AGTATCAACAGACGagttattgtttatttttaaaaggTTTGTGAGGAATT
GTACAGAGGAGGAGAAATCTACGCTTGAGTTGCGGCATATGAAAGAGGGA
CGTATGAAAGGACAAGCTTTTGTGACATTTCCAAACGAAAATATTGCAGA
AAAGGCTCTGAGACAGGTTCACGGTTACATCCTTCAAGAAAAACCATTAG
TTATCCAGTATGGAAAAGCAAACAAGAAGTGATCATATGTATTTCCTCTA
AAAAGTATTTCAGCTGTGATTTAACTATTAGTGTATTGAAAAAATAGTGC
TGAAATTTAACTCAATAAATCTGTGAGAGTATGTTGCGATGAAATCACTT
TTTAGA
Run BLAST on NCBI

transcript from alignment at scaffold_16:25457..36361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049471 ID=TCONS_00049471|Name=TCONS_00049471|organism=Clytia hemisphaerica|type=transcript|length=10905bp|location=Sequence derived from alignment at scaffold_16:25457..36361+ (Clytia hemisphaerica)
AGATTTTCAACTGTTCGACAGCACTTTTACCCAGAAATCTTTATCTGACA
GTAAGTTACTTATCCATGTATAGCGTATAGTAAATTTTCTACTCAGGCTT
GATTTGTAGTGTGTAGGGCCAAGGAGAACCCTGGCagcttgatttttttt
cagtttataGAGGTTAATTGTCATCACAGGGACGgggatttaaatatttt
tttattatatattcaGGAAAAGGGCGCTAATCGAAAGCATCCCAGTCTGG
AAAGGAGGGAAATGTTATGCAGGAGCTGCACCAACTTAACTGGGAAAAGT
TGAAGGCAGCAGATCTCAAACCTCAAATCTATGCCGGAGATATCCGGCGC
GCACAAGCCGCAATTTCCAGAGACTGGATGGGGAAAGTGTCTATAGTTGG
CAACTATAGATTACTATTAGTTGCGAAAATtagcctcaaagcctcctgct
actcaaccaaatagaaatagaaatagacagtcctgattcagtcacgaccc
tcgacatggcccgagaattctcgggcctcttcaggccatgttcgggccga
gaggcCGAGAGActctatcaattcttttggcccgaacatgacctgagtca
ttcgggccatgttcgggccatgtcagaagattccatatttaaattgattc
agcatgcccagtcaaacaaaatagtacaaaataagatttgtctgttttgt
ttatatcgctcaaaaaaacttacgagcttcccgttgacacgcttcagttt
taaaaccaggaccagtttactagcaaatatttccaccctaagtatattta
taaccatgttttcataccaaataagacatttaatatttatatgaatttac
aacattcatatatttaatataattaagagaaaccaagtttttctcaaaga
aaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGCTCGGGCCATCCTCGGGCTTTAagcaaattcca
ataaaagttttggcccgagaattctcgggccatgtcgagggtcgtattca
gtcaggcacatcctggcaaatgaacggggtgagcatttgcatggggctTT
CGTCACCCACTGCAAATGAGATAGGACATCTCAGGCTAAAAgtgtaaaaa
tgaataaaaatgaacttcaaactgaaaacggGAAAAAAGGTAGAAagctg
ggaactttatttttttgttaaaagtttcttcaatcttcaaagaaaaaatt
gacccatggaaaaaaaatttcatctatgcagtgtTCCGTCTAATCTTGGT
TCTCTGCCGAATCTTGGTCCCTTGCCGAATCTTGGTCGCGCTTGCCTAAT
GTTGGTCAGCAAACGCTTTACCAAGAGCGAGTCGAGTTCTAATTCAACCG
CAAACGAATTATCGAGTACCATTGTGCCGATAACTTCGATGTACGGAGGA
TAGTACTCGAACTCTAAAATATCAATATAGGTAATTCAGTTCTTAAAGCT
TTCCACGCCAAATAATTACTTGTGgttcagaaaaataaaaaatacgcATG
ACGTAAAGGGTCATTTTGCCGCtacttttataaaaagaaagtaatCCCGA
TCTCAAGCAATCTGATTGTGGCAACTTGTTGTGTCGAACAATCTTCAAGT
ATAAATAAGGGCGATCGATGTTAAATAAATTGTGGATTCGAGAAAAGATT
ATTCaattacttttttgtaagaaactgCCTAATTATGTGCAATAACTTAG
GCTACGCAGGGACCGCAATTAATTCACAAGACCAAcattaggcaagaaaa
aacgttGCCGAATGATGTCCCTTAAGTCACAAGACCAACATTAGGCAAGG
AAAATGTTGCCGAATGATGGAAATTAAGTTGCAAGACCAACATTAGGCAA
GGAAAATGTTGCCGAATGATGTCCCTTAAGTCACAAGACCAACATTAGGC
AAGAAAAAATGTTGCCGAATGATGTCCCTTAAGTCACAAGACCAACacta
ggcaagaaaaaacgttGCCGAATGATGTCCCTTAAGTCACAAGACCAACA
TTAGGCAAGGAAAATGTTGCCGAATGATGGAAATTAAGTCGCAAGACCAA
CATTAGGCAAGGAAAATGTTGCCGAATGATGTCCCTTAAGTCACAAGACC
AACATTAGGCAAGGAAAATGTTGCCGAATGATGGAAATTAAGTCACAAGA
CCAACACTAGGCAAGGAAAAACGTTGCCGAATGATGTCCCTTAAGTCACA
AGACCAACATTAGGCGAGGAAGACGTTGCCGAATGATGTCCCTTAATTCA
CAAGACCAACATTAGGCAAAGAAATGTTGCCTAATGATGTCCCTTAAGTC
ACAAGACCAACATTAGGCAAGAAAAACGTTGCCGAATGATGTCCCTTAAT
TCACAGGACCAACATTAGGCAAGAAAGACGTTGCCGAATGATGTCCCTTA
ATTAACAGGACCAACATTAGGCAAGAAAGACGTTGCCGAATGATGTCCCT
TGAGTCACAAGACCAACATTAGGCAAGAAAGACGTTGCCGAATGATGTCC
CTTAAGTCACAAGACCAACATTAGGCAAGAAAGACGTTGCCGAATGATGT
CCCTTAAGTCACAAAACTAATATTAGACTGttgaacgtgctaaccgcact
ggctcaacttcagtatctttgaaatcatttgtaggtcaaattgtaaaatt
tatggcTTAAGGAAAATTTTAGCATTCCTTAAataggttttagcctcgtt
taggctaaaaaactcgtccccaggcctcaaaaatgataattttcgaaaat
gaaaaaaattcgattcgatatttttttcggacttttgaacttttcgattt
tccactttcgattttgccTAACGTTGGGCTACTCTGCCGAATCTTGGACC
CGGGGTCTGGACCCGAGTTAGCGGCGACCAAGATTCGGCAAGTATCATAA
TTCGGCAGATCAtgcagttcttcaaaatgaagcaaaatatttcaaacccg
gttcaattgcgtggggtattcagcactattacatcacttttgttttcgac
cccttgcatttgccaccaatcacaagtgaaaaataccccgttcatttgcc
aggatgtgcctgactgtgaTTTAtactagcctagaaatctaagctagttc
gATTCAGTCACTTgaataaatctgatggttaagttgtgactgaataacta
gcttagggacagtaaactcggtagcttatcaactgacaacaacgacaatt
caaatttcgcggtgagggataacgtaaactcacataatttgcataattat
tcgtcgttgacttaattcgtctcatatcaaaaatatgaaatcacacACAC
AGAACacaatatcaaaacattatttagaatttttttattttgtccttttt
tctatcttctgattggctcttattgtaagattagataaacaaactctccg
tcttacagtttatgcgctccttttgtaaaatataaaatgaaattctattg
taaagtgtgccgatggagagtgaaggaaaatttgttcatttttttcaaaa
agttatgtttgtgttttatggaaaagtcaacaagagacaaattcgtttct
tgagtgataattttatgatttgatataaaagtattttgtatgatttttac
aaagctcatcataaaaataaccttcaacaaaatagataaaaattacttta
gactagcaggctaaaataccgtatacaaaacaatgtaatcaatccccccc
aaaaaaacattttcttgagtcttgaattcgtatagctgtcactgaaaata
agcaccgacaattttatgttcttcgaatatcaaagatgtcattgtctgta
aaatcgagcacaaagtctcaaattcataaaacaacaagaaaccacaacca
gtcaaaaaccaagagctgtctatcatctatccattcagtgtggctcgaat
ccttcagatccttggttagaaaaagctatacctgtttacttttttcttgc
cagattcaacaagccatcaaccaacaaaattaccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTTTCCActagacact
tctaaattatctgccattatgaagatgttccgaaattaaccaatcgggtt
tacaatcggaattCCTCTGGGAGTTAGCGAGTCAGGAGATGTAAAGTTAC
GTAATAAgtaatacataatttttccAGGGGTGAAacgtataaaaaaattg
aaacggttcgtttttttcttcattatatatttaagttttcattattaaaa
ttctaaaaatgctaatttgtagaccatataagaaaatggttatatatttc
gcaaaataaacacttacaaaagctattacttactatttttacccccgctt
tTTAAACAGCGTCTTCTGTGGGCGTGATATCAGGCGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTA
TTGTTCATGCTAAATCCATACACGATGACGTCAATGTTTGGcggcatacc
tgaaaataaaaacaaaaagattattattatttttgcatgaattacgTTAC
CTTGTTATacgtcattataaaattataaaaaacgaaagtgaGTGCGCAgg
ccctaatattttttctctcgcggtcttcaggggaaaacgaaagtgatcga
tattcttcgaaGGAAGAACTTACCAAAAAAACCCCTAGATAAAAAGATGT
ATTTCgaggttgggaatggatcctgcgaagatgaaacaattttgactagg
cgtttttttggcaaacccaaaaactctaattttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NaaaaagctggtgttttccgtAAATCTGAGAATCGCGATAATATCCTCAC
TGCCATTACAGTATAATAaaatatcatgtcatgcaatccaatcagaatac
agaactacagcataggatctgtacaagtactctctcttatatattgccac
atatgatagtcaatgttcaatcacaaatctttactttattatttgccatt
ctggaaacaagcaacttttgctgtctttacgacgaatagcattctttttt
cttcatcagttcaattcttcctaaaaacaagagaagcactatcaggtcgg
gatcaggtcttgaaaactttttctgatgcAGTATTCgtattccaaatata
tctctcggctctctcatggtaatagtctcacatcatgatataatcgaaga
aagatcttgcattcaatgagtcccatcctcttctactcgttttctaataa
aataattataaacttctatcgctcacgaaaactcccgattttttaccacg
tgagccactctgaccaatcagaagctcactgaatcctgcgttcatattat
gaacgcaccctttccctaagccagtattccaaggcaaacttaaaatataa
aaaatctttaaagcgccgaaaaacgctatattgccataagccatgtgtcc
tagccttgtgaatacaggcttagttaactaggctaaatTTATACCTGATT
TATACCTTAAAGTGACAGTGTATAAGCTACTTTAGTAGGCGTACTTACTT
TTGCGAGGTCGATAAATTACGAAATTTGCGAcgtttactttcgcgaattt
gaggaaaaaatgtttttgcaagCATAAATTTTCGCAAATTGGTTGGGTAA
AAAGgagaattttcgaataaaaattgccttaaaagtgaaaagaaTTCCTT
CAATCTGCTAAAGACGGTTGCTCTTTGACTTGCATTAAAGGATAATTTAT
CGACGGGTACAAAATgaataaaacataatgcataatggtattgtgtaatt
tacagaacgatttgtattttctaaaactctcctttgtagaggctaaaacc
gcgaaaacctctttagaagagtttcttgtaaacattccaatctgCCAATA
AGAGGGATTTCCCGagacataatatttacttttttgaattcaaacgaaag
agaaaacattcgaatcataaaaacaaaggatcttccgtcagcataaataa
taagaagatgcaacagatcagaaaggtttcccccttcttctttctcaaaa
aaaggtaaacacatttaaacgattcgaagtctattttctttgatctagct
tccgcaataagctctttaatttatatttgctggatattggcttatctaac
aaaaagcattcacatgtttaatgctttgtaagagggaaaacccgttgaaa
tttattagaaattgttcaaaaagatctccgagaaaacccagaataaagat
cttgctattataaaatttacgttcgttttcgctttcgaaaagtaatatac
ggaggagatattttcgtgttttttctacactatactatgaaaatcaaaat
ggtgacaagcattttcagtggatcatggattttcttcatcatctaaaatt
caaatttacagctttctacttTCTACCCTTTGTTttttggtagaaaatgg
tatatttgttttgttgaaagtaacATCTTTCAAGTTctcctagactagta
aactagtcgttgaaaacagacctattatacaaaaaatcaagctccaaata
gaagttgcgtctcttttctgaatttcaacgactagaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgaagaaaaaaaggcgttggaagtagcttct
agtcggttattttccttttctctcacgcgcgctgaatatttaattaatgt
ttacattatttgattgacagttttattataaggttataagtaataaccga
ctagtttactagtctaaagttctccttattatagactctaaaattgacat
tttcaaataattattatgcattatgcattatgcaatactgtatgcattat
gttttatgcattatgtACCCGTAGGATAATATATGCTGATTTATTacaat
ttcaaggtttttagatttccaattttttaaagaatttttcgcAATGTGTA
AActttcagttaggaacatttggcaagTTCCTGTACGCGGTCACAATCTT
TTAgtactttttttagcctagacgatgtagcaaacatagtaaatatcAGC
ACAtttaattggctgaaaattttttttgcgtcagaaaaactttttcaaac
tttcagcaatgattgaccaaactgttgcaatgaaaattatccagcacatt
tttatcttcttaatcttcaatgaagcaccgaaagtttactgaatttaagc
acataagatattcttataattattgatattcactgaaacaccgttcgttg
tgcgctgcggtggagtgtatgacATAACTCGCGCAGTAACTAACTCGCct
tttgttggaagatcatattgggcgttttggcgttatcACCCTCTCGAAGC
AGCGGGCGcctctgtctttccgcaacGCTTTCCACTattttagatggcca
taacaatagatccaaaagggcgccataatcttggaagatgatttgttttg
gtctccagctttgggaagtagcaatgtttttggttgtttttgatggaaaa
tagtaagaaacttaagtttacaagtgtcatttagtttttactggcttata
gaatggcaggatcctggatggtttccctaactgaattTTGCAAAttgccc
tgttaagaattttcaaagacatttacttttgcgaaaaaggccaaaatttg
caaaaatcgtgaaagtttctgctcgcgaaagtttgtacgccttgAATTAC
CCCCTCAAAATGTTCGCCGCCACTGTATGGATNcgaaagtttctgttcgc
gaaagtttgtacgccaataagatttaccccctggaagaaccaaaaaattc
tcttttagaccccctggaaattctgctTGAATTACCCCCTCAAAATGTTC
ACCCGTcactgtatggatataaaatggaatggcccattgtaCCTTGGAGa
ggtattttcaaatttgttggTCTTTCTAGTTCAATACCCTCGTTCTTTAG
GGTCCAAATACAGGAAAGAGCTTTCTTATGGTATTATATTCTATGCAATG
AGTTATGCGATAATAATTTGATTATGcttatcaaaattttttattttagg
atCCACACACAATGGAAACAAAACTGATTGTTAAAAACATTCCAAATAAA
TTTAGTGAGCAAGATAAGATTGAGTTTTTACAATTATTTGGTTGTCAGAA
TGTAACATGCCTAAATGGAAAATTGAAAAGCTGTTGCTTTGTTGAATTTC
CTGATGCTGAATCCACCAAACAAGCGCTGGATGTTTTACATCAATTTGAG
ATATTAGGAAAGAAACTTGTGGTAGAATATGCTAAACCTATTCATCAAAC
AACAGCAAATGAAATTGaagctcaaaaagtttttgatagaaAATCATTTT
TCCTTGACAAAGCAGGAACAAAAGATTCAGCAGATAAAACTAATTTGGAT
AATGAGAATGATCTATCACAATGTGGATTAGCTCCAAGCTTAGGGTTAAA
TCATAATTTTCCATCTCACTTACATTACAAATACCCTGAACCTAACGTAC
AAATATTAACAAATATAGCTAATGCATTAGCAACTGTTCCAAAGTTTTAT
ACCATGGTTTTGAATTTGATGAATAAGATGCATTTACCACCCCCATTTGC
TGGTTTGACTCCGACTCCACCTCTACCAGATAACAAAGTCAACATGCAAG
ATGCATCAGTCGATACCACAGATTTGGCAAGTTATTGTTCTAGTGAAGAA
TCAGAACTTGAGAGTGAtagcgaaaataaaaaacatgaaatttacaTCAA
TAATCCAACAATCAGTCAACCTATACGTAAGAGGAAAAGGTTGAGGGCAG
CTGCTAGTAAGGACCAAGAAAAGCTGCAAATGAATAAATCTGTTAAATCA
GATCTTCAAACTGAATCACCTTTTGAATTGACAACATCAGTTAAAAAATT
GGAGTTCAAACTTGGAAATAGTATAAAAGATGCAGTTGAAAAGAAAGCTG
CACCACCAGTTCATTATAGTATTTTTGATGAAAGAGGCCAATTTGGGAAA
ATTGAACCTGTTGCTAAAGTTGTTAAAGTAgatgagaaaattgaaaaaca
tgtGGTAATGCCTGATGTTAATGAAactatttcttttgaaattgaagGAC
AAAATATTGCAAAAGTAGAACAAAGTACAATAGAGTccgaagatgaagaa
gaagaagaagataacGCTGATTATATTACAGCAAAAGtgttgaaagaaaa
taaaatatcttctgaagaaattcttaacatgaaccaattcaaaaattata
aaggAGGTGACAAAACCAATCGTTTATATGTCAAAAATATTGGAAAGCAA
GTATCAACAGACGagttattgtttatttttaaaaggTTTGTGAGGAATTG
TACAGAGGAGGAGAAATCTACGCTTGAGTTGCGGCATATGAAAGAGGGAC
GTATGAAAGGACAAGCTTTTGTGACATTTCCAAACGAAAATATTGCAGAA
AAGGCTCTGAGACAGGTTCACGGTTACATCCTTCAAGAAAAACCATTAGT
TATCCAGTATGGAAAAGCAAACAAGAAGTGATCATATGTATTTCCTCTAA
AAAGTATTTCAGCTGTGATTTAACTATTAGTGTATTGAAAAAATAGTGCT
GAAATTTAACTCAATAAATCTGTGAGAGTATGTTGCGATGAAATCACTTT
TTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031388XLOC_031388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049471-exon-scaffold_16-1491911889:25457..25506TCONS_00049471-exon-scaffold_16-1491911889:25457..25506Clytia hemisphaericaexon
TCONS_00049471-exon-scaffold_16-1510915933:25457..25506TCONS_00049471-exon-scaffold_16-1510915933:25457..25506Clytia hemisphaericaexon
TCONS_00049471-exon-scaffold_16-1575043694:25457..25506TCONS_00049471-exon-scaffold_16-1575043694:25457..25506Clytia hemisphaericaexon
TCONS_00049471-exon-scaffold_16-1491911889:34756..36361TCONS_00049471-exon-scaffold_16-1491911889:34756..36361Clytia hemisphaericaexon
TCONS_00049471-exon-scaffold_16-1510915933:34756..36361TCONS_00049471-exon-scaffold_16-1510915933:34756..36361Clytia hemisphaericaexon
TCONS_00049471-exon-scaffold_16-1575043694:34756..36361TCONS_00049471-exon-scaffold_16-1575043694:34756..36361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:25457..36361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.194	36.8199	17.5448	13.7699	8.62972	5.5652	7.02939	6.81691	4.75202	4.17149	4.32219	3.69034	3.63629	3.9626	4.03744	3.6754	4.2333	5.01815	2.60633	2.12732	7.01684	6.03574	33.9874	28.0115	5.81761	8.64564	4.10155	3.73145	17.7158	21.1549
Blast
[Close]
BLAST of TCONS_00049471 vs. Swiss-Prot (Human)
Match: RBM40 (RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.860e-24
Identity = 68/186 (36.56%), Postives = 97/186 (52.15%), Query Frame = 3 
Query:   54 PHTMETKLIVKNIPNKFSEQDKIEFLQLFGCQNVTCLN--GKLKSCCFVEFPDAESTKQALDVLHQFEILGKKLVVEYAKP---IHQTTANEIEAQKVFDRKSFFLDKAGTKDSADKTNLDNEND-----LSQCGLAPSLGLNHNFPSHLHYKYPEPNVQILTNIANALATVPKFYTMVLNLMNKM 581
            P   +  L+V+++P + + ++K + L+ FG Q+V  L+  G+LK   F  FP+ ++  +AL  LHQ ++LG  LVVE+AK    +H         +K              K S D    D E         + G+AP+ GL     S L Y YP P+  IL NI NALA+VPKFY  VL+LMNKM
Sbjct:   22 PPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKK--------------KRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKM 193

HSP 2 Score: 97.4413 bits (241), Expect = 2.784e-21
Identity = 48/120 (40.00%), Postives = 83/120 (69.17%), Query Frame = 3 
Query: 1167 ADYITAKVLKENKISSEEILNMNQFKNYKGGDKTNRLYVKNIGKQVSTDELLFIFKRFVRNCTEEEKSTLELRHMKEGRMKGQAFVTFPNENIAEKALRQVHGYILQEKPLVIQYGKANK 1526
            ++ I+ + L++ +IS EE+  ++ F++Y+ G+   R+YVKN+ K V   +L +IF R+V   +E ++   ++R MKEGRMKGQAF+  PNE  A KAL++ +GY+L  KP+V+Q+ ++ +
Sbjct:  386 SECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
The following BLAST results are available for this feature:
BLAST of TCONS_00049471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM402.860e-2436.56RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE... [more]
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