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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049432 ID=TCONS_00049432|Name=TCONS_00049432|organism=Clytia hemisphaerica|type=transcript|length=2034bp
CTTCTCCTATCTAAAGCTATTACAAAATATCTCACGACGTCACAAACAca
caaattttctttcaatcaataaattcattaaaatataGATAACATTATTC
CACTCTAACCATATCTTGCCCCTCTATTATCCTCAAAGtataaaaaagtt
acaaaagaattttctacaaaaatttGTTTATAATTTACTACCTTTCAATT
GATATCCTAGTAAAGCGGAAATTTGTTGAACTCGACATGttctatcaaaa
tatttttcttttcgtcCTTATGCTTTCTGTGTCAGCTCAAGATAAGAGCG
TACCAGAGAACGTGTTGAAGAAATTGCAAGGTGGTGACTTGGAGACACTG
TTTCACAAATTGAAGATTGAAGAACCACGGCAAAGAGGATTTGACGCCAT
TCTGTTTCCCAACCAGCCATGTCTTCCACGAAAAACGGTCATTGAAGTCC
CTCAACCGAGCAGCGTGAGCAAGATCCATTTCCCTTACTATGTGGAAGTG
CACCGATGTGCTGGTGGATGTGGCCCTATGCAATTCCTTTCCAGATGCCA
ACCTAAAGAGACAAAGAAGGTTCGTGCTAAAGTCATTGCTTTAACCTGGA
CCTCGGGAAACCCAGAAGATGAAATTCCACCGGCATTGGCTTACGTTGCC
ATCACCAACCATACATCATGTGAATGTGGATGCAAACATGAAGGGAATGA
ATGCAATCGTTTCCAGTTCTGGGATACAGCTCGTTGTCGGTGCAATTGTA
TGAGCTGGGGATGCCCAAAAAACTTCGAGAAAGACCCGAATAATTGCTGT
GCTTGTCCCATTCGAGAACGTTTTTGTCCTGCCCGTAAACAGGAATGGAT
TCAGTCTCGCTGCGCTTGCGTGTGTAAAAATCTTCACAAGAAATGTCGTT
TCCCGTCGAAGATTCGGGACCCCAATACGTGCAAATGTGTTTGCCCACCC
ATTATTTGTCGCTCTGGCAGCAAGTTGGACAGCAAAACATGCCATTGTCA
ACCCGATAATTCATAACCTTGTGGTGGTATACTCGAAAAGATTAATTTCC
TCAAATAGCCAAATACGTTTTTCTGCGCCAATTTTTTAATAGCGAGATTT
GATTTAAATGTTCTTTTCTCGTTGGTGATTTTTATTCAAACTCAAGTTTT
GTGGCACCATCCCTCAAATAtaagaaattttgtattttcttcgaGAACCt
cagacttttttgttttcatatcgAAGGTTTCTATATTCTATAAAgtgtgt
ccaaaaaaaaatcagaaccAATTTTACATGAAATTAAATCCTCAAAACTG
GTTATTCCAAGCttgttaaaatttatttttgattttgattgataaGGTTA
TATGGCTACATAGAacacttactctcgggtacctaatagccgtccccccc
ccgctaattaatttttcaaaaattttccacccaggacattcttattccaa
ccccccgcttataaatttttgggaaaatgtttttgaaagttccctttttt
gtcttaattctgctgtattagcctccctttcaaacattttccacccagga
catttttattccaacccccccgcttattaaattttgagattttttccaac
ccccccggctattaggtacccaagagtaatATTATTAAGTTGTGCTCATA
GTATAGTGAAAAAGTGCCCACAATGTATTGCCAACTCAAGAggattcctt
tttataatagagtatgTGTTGTTAACTTCGTACCTTAccgtccgcaaacc
atattgttcACATATTGTGTTGTTTAAGCAGTCCTTATAAAGGTTATATT
TAAATTCTGCTCCGTTTTTTTTCGCGGACACACTGTGTTTAGCTAGAAGA
CCTTCCGTGTATTAGAtaattttattataaaaaaaccaaagtaattcttt
gtttttatgtatttttattttattttagctGTTTGTTATGAAACACCACA
GGAAATGTAATTTTCAAGTAATTTTCATCTGAGAGCAATCTTAAGAACAA
AGATATACATTAATCCAGTAGTAATAAAACCCGA Run BLAST on NCBI transcript from alignment at scaffold_159:132717..135185+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049432 ID=TCONS_00049432|Name=TCONS_00049432|organism=Clytia hemisphaerica|type=transcript|length=2469bp|location=Sequence derived from alignment at scaffold_159:132717..135185+ (Clytia hemisphaerica)
CTTCTCCTATCTAAAGCTATTACAAAATATCTCACGACGTCACAAACAca
caaattttctttcaatcaataaattcattaaaatataGATAACATTATTC
CACTCTAACCATATCTTGCCCCTCTATTATCCTCAAAGtataaaaaagtt
acaaaagaattttctacaaaaatttGTTTATAATTTACTACCTTTCAATT
GATATCCTAGTAAAGCGGAAATTTGTTGAACTCGACATGttctatcaaaa
tatttttcttttcgtcCTTATGCTTTCTGTGTCAGCTCAAGATAAGGTAA
TTACTTTCCCTACAATTTTCAAAGTGACATCTAATTTGGTAATCGCTAGC
TAGGTAGTTCCAGGGAGAGTTGTTGAAAAAACTTATGACCCTAATATGAA
GGAAATTGTACCATGAACTAGAGTGAGATTGATTGTGTCAATTGAATGTA
TTACAACCATTTTCAATCATAGAGCGTACCAGAGAACGTGTTGAAGAAAT
TGCAAGGTGGTGACTTGGAGACACTGTTTCACAAATTGAAGATTGAAGAA
CCACGGCAAAGAGGATTTGGTAGGTTGTTCTCTCTTCTTCGTATCGGTTT
TGTTGTATTAATTTTTGTGGTTAAAACATTGCCATGTATTGTTAACTTGT
TCCATTCCATTCTAGACGCCATTCTGTTTCCCAACCAGCCATGTCTTCCA
CGAAAAACGGTCATTGAAGTCCCTCAACCGAGCAGCGTGAGCAAGATCCA
TTTCCCTTACTATGTGGAAGTGCACCGATGTGCTGGTGGATGTGGCCCTA
TGCAATTCCTTTCCAGATGCCAACCTAAAGGTACGTTTATCACTATCTGT
GTATAACTTTTAAATCATTTAAAGCGGCGGTGAATATGTCAGCAGTATTG
AAAAGACACTATGATCCTAATATCAACTGGGCAAACATCCATTTTGATAC
ATTAGACCTGTCAATTGCAACATTTCGCAACTTTTACATTTAGAGACAAA
GAAGGTTCGTGCTAAAGTCATTGCTTTAACCTGGACCTCGGGAAACCCAG
AAGATGAAATTCCACCGGCATTGGCTTACGTTGCCATCACCAACCATACA
TCATGTGAATGTGGATGCAAACATGAAGGGAATGAATGCAATCGTTTCCA
GTTCTGGGATACAGCTCGTTGTCGGTGCAATTGTATGAGCTGGGGATGCC
CAAAAAACTTCGAGAAAGACCCGAATAATTGCTGTGCTTGTCCCATTCGA
GAACGTTTTTGTCCTGCCCGTAAACAGGAATGGATTCAGTCTCGCTGCGC
TTGCGTGTGTAAAAATCTTCACAAGAAATGTCGTTTCCCGTCGAAGATTC
GGGACCCCAATACGTGCAAATGTGTTTGCCCACCCATTATTTGTCGCTCT
GGCAGCAAGTTGGACAGCAAAACATGCCATTGTCAACCCGATAATTCATA
ACCTTGTGGTGGTATACTCGAAAAGATTAATTTCCTCAAATAGCCAAATA
CGTTTTTCTGCGCCAATTTTTTAATAGCGAGATTTGATTTAAATGTTCTT
TTCTCGTTGGTGATTTTTATTCAAACTCAAGTTTTGTGGCACCATCCCTC
AAATAtaagaaattttgtattttcttcgaGAACCtcagacttttttgttt
tcatatcgAAGGTTTCTATATTCTATAAAgtgtgtccaaaaaaaaatcag
aaccAATTTTACATGAAATTAAATCCTCAAAACTGGTTATTCCAAGCttg
ttaaaatttatttttgattttgattgataaGGTTATATGGCTACATAGAa
cacttactctcgggtacctaatagccgtcccccccccgctaattaatttt
tcaaaaattttccacccaggacattcttattccaaccccccgcttataaa
tttttgggaaaatgtttttgaaagttcccttttttgtcttaattctgctg
tattagcctccctttcaaacattttccacccaggacatttttattccaac
ccccccgcttattaaattttgagattttttccaacccccccggctattag
gtacccaagagtaatATTATTAAGTTGTGCTCATAGTATAGTGAAAAAGT
GCCCACAATGTATTGCCAACTCAAGAggattcctttttataatagagtat
gTGTTGTTAACTTCGTACCTTAccgtccgcaaaccatattgttcACATAT
TGTGTTGTTTAAGCAGTCCTTATAAAGGTTATATTTAAATTCTGCTCCGT
TTTTTTTCGCGGACACACTGTGTTTAGCTAGAAGACCTTCCGTGTATTAG
Ataattttattataaaaaaaccaaagtaattctttgtttttatgtatttt
tattttattttagctGTTTGTTATGAAACACCACAGGAAATGTAATTTTC
AAGTAATTTTCATCTGAGAGCAATCTTAAGAACAAAGATATACATTAATC
CAGTAGTAATAAAACCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049432-exon-scaffold_159-1491911889:132717..133012 | TCONS_00049432-exon-scaffold_159-1491911889:132717..133012 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1510915933:132717..133012 | TCONS_00049432-exon-scaffold_159-1510915933:132717..133012 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1575043694:132717..133012 | TCONS_00049432-exon-scaffold_159-1575043694:132717..133012 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1491911889:133189..133285 | TCONS_00049432-exon-scaffold_159-1491911889:133189..133285 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1510915933:133189..133285 | TCONS_00049432-exon-scaffold_159-1510915933:133189..133285 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1575043694:133189..133285 | TCONS_00049432-exon-scaffold_159-1575043694:133189..133285 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1491911889:133382..133546 | TCONS_00049432-exon-scaffold_159-1491911889:133382..133546 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1510915933:133382..133546 | TCONS_00049432-exon-scaffold_159-1510915933:133382..133546 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1575043694:133382..133546 | TCONS_00049432-exon-scaffold_159-1575043694:133382..133546 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1491911889:133710..135185 | TCONS_00049432-exon-scaffold_159-1491911889:133710..135185 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1510915933:133710..135185 | TCONS_00049432-exon-scaffold_159-1510915933:133710..135185 | Clytia hemisphaerica | exon |
| TCONS_00049432-exon-scaffold_159-1575043694:133710..135185 | TCONS_00049432-exon-scaffold_159-1575043694:133710..135185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_159 | supercontig | scaffold_159:132717..135185 + |
Blast
The following BLAST results are available for this feature:
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