TCONS_00049424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049424
Unique NameTCONS_00049424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049424 ID=TCONS_00049424|Name=TCONS_00049424|organism=Clytia hemisphaerica|type=transcript|length=1411bp
CTCCAATCTCATGCCGGCTATCCCAGGAAAAAAAGCGGAAATATTCCAGA
AAAGTGATGCCAATATAAGTGTGGAAATGGGAATGTTATACAAAACGACG
ATGGTGTGAGGTGGTGTGGGTTGGGTTGGTGTAAAGCTATACACAGACAG
AGACACAGATCAACACCAACACAGACCATGCATGGTCCATGCCATCATAC
ATAAACGCAAAAAAGCCAGCTTAGGTTAGCTGCAcacaactcaaccaaat
agaaatttgTGAAACCGAAAGTTACAAAAATGAATACAATGTATTCAAAA
CAGAAACAGAAATATCCTTACCAAAATGCAGGCGACCAAACTTTTAATGA
CTCTTCTAGGTCTTTTTGTTGTGGTTTTGGgcctggaatttttttttaaa
tttcaacacCGCCATCATGGTGTTTATGAAAATCGTCTGCCGTAGGATGA
GATACGTTTTCGGTACGCGAATTTCTGTCGTGCTGTAAGTTTTACAGAGT
TTATCAGAGTAAGCTACAACGCTTTTGATGGAGCCACGTAAGTACGTCGC
TTGTTTCTACCGTGTCCCGAACAAAATGGTGGAAAATGTCCTAAAAATTT
TAGTGGATACACAACAGATGTTTTACTATGGCgatttgaagatttttatg
TAGTCACAATTTAATCTTTTCTATCAAGTCATCAATAATTATTATCCTCT
ATATTTTGCTGTCATTTGTTTCAATATAAATTAAAATGGACTTTctgact
tttctttttttttaaagtgaaaatcaaaatttaaaatgtcagGATTATTT
CTTGGAAATCATGGTGGTCGTGCACATTGTTACCGATTTTTTGAAGACAT
GATGTTGTGTGTCAAAGAGGAAGGGATCCATAGACAGATATTCAAATGTA
GGGAGCCAAAAGATGACTATTATGAGTGTGTATTGCACAAGAAAAAGATT
GGGAAGTACAATGCAATTAAAGAACAAAAGGCCAAATTAATCAAGGAAGG
TAAATGGCCACCAAAGGACAATTGAGAGTTGAGCATTTATTGTAATTTTA
ATAAAGTTTGTCTTAAAAGAATGCCattattttatcaaatgaaTTTGACT
TATGTCATGTCCAGTACTCATCCCGGAAACCAGGCAATAAATGCTGAAtc
ctttctttttataaatcttATAACTGTAATGGTACGGTGGTAACAAAGTA
AACTAATTTTAGTGATATCtgccttaagtggataaattttggcgtggatt
aatttggcgaatgaccaaaatgcgatttttggcggggatttaatttggcg
aatgctcaatattgtaaaaattggcggggatttaatttggtgggTGGGAA
GGTTTTAGTCTCTGGTAAACTAAAAAATACGTGGGATTTGACTAAGAAAT
GCTTATTCTCC
Run BLAST on NCBI

transcript from alignment at scaffold_159:46946..50549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049424 ID=TCONS_00049424|Name=TCONS_00049424|organism=Clytia hemisphaerica|type=transcript|length=3604bp|location=Sequence derived from alignment at scaffold_159:46946..50549+ (Clytia hemisphaerica)
CTCCAATCTCATGCCGGCTATCCCAGGAAAAAAAGCGGAAATATTCCAGA
AAAGTGATGCCAATATAAGTGTGGAAATGGGAATGTTATACAAAACGACG
ATGGTGTGAGGTGGTGTGGGTTGGGTTGGTGTAAAGCTATACACAGACAG
AGACACAGATCAACACCAACACAGACCATGCATGGTCCATGCCATCATAC
ATAAACGCAAAAAAGCCAGCTTAGGTTAGCTGCAcacaactcaaccaaat
agaaatttgTGAAACCGAAAGTTACAAAAATGAATACAATGTATTCAAAA
CAGAAACAGAAATATCCTTACCAAAATGCAGGCGACCAAACTTTTAATGA
CTCTTCTAGGTCTTTTTGTTGTGGTTTTGGgcctggaatttttttttaaa
tttcaacacCGCCATCATGGTGTTTATGAAAATCGTCTGCCGTAGGATGA
GATACGTTTTCGGTACGCGAATTTCTGTCGTGCTGTAAGTTTTACAGAGT
TTATCAGAGTAAGCTACAACGCTTTTGATGGAGCCACGTAAGTACGTCGC
TTGTTTCTACCGTGTCCCGAACAAAATGGTGGAAAATGTCCTAAAAATTT
TAGTGGATACACAACAGATGTTTTACTATGGCgatttgaagatttttatg
TAGTCACAATTTAATCTTTTCTATCAAGTCATCAATAATTATTATCCTCT
ATATTTTGCTGTCATTTGTTTCAATATAAATTAAAATGGACTTTctgact
tttctttttttttaaagtgaaaatcaaaatttaaaatgtcagGATTATTT
CTTGGAAATCATGGTGGTCGTGCACATTGTTACCGATTTTTTGAAGACAT
GATGTTGTGTGTCAAAGAGGAAGGGATCCATAGACAGATATTCAAATGTA
GGGAGCCAAAAGATGACTATTATGAGTGTGTATTGCACAAGAAAAAGGTA
TCACTAATCTGATTCACGCACCATGATTCAAGAAATGTCAGACacagaat
gttttcaatgctATATAGCAAACTTTTGTTTAAATTTGTTCCAAAAGCTC
Cccagaatagaccttttttcaaagaggccaccctgttgaataattatgta
gtccagcaggaAAACAATGcaataaaaccatgcataattattacaataat
atgcatgatacagtgaTTATGCATGACTCTATcgttgtttttatggctgg
actacataattattcaacaggacgtcctctttgaaaaaaggtctatttaa
aaCAGCTAAATTGAAATTATGATCAGTGGCACAGTGTGAAATAATAAcag
aaaatttgattggctcTGTTTTCAACTGCTGTTTAGACCTGggaaaatag
accttttgctagacGTGATGTTATGTtggataattaaaaactccagctct
aAAACAATGACACATTCAATGAcactggtccttaaaatacaaagttaaat
caaaacaaaaatggtagtgtatagctgcgagcagagctgcatagttcatt
tgttttgaaattttgctgctttgattggtctgtcatttgagggctatgca
tgttagcctacactgatgcaagttacccgacttcacggtacttcagcaga
attttttttaatgataacgTCATCTTATTGTTTTCTCCTTTACAACACAG
CAAGTGATCTAgggacaaaataatttttcctgtTTGTACTGGATGAGGGA
AAGAAATGTATGTGgaataatttgttattcaatagatcATCCTGTTCTCC
TAAATGACTACACATGgttctatataagaacataaggctttgatggccaa
aatgttaagaacaagttaagaaagaacatttttttttaaggctttgcact
GCTTTGCAGACTCTGACTCAGACatctgatttcttaggaaaatgaaaaat
taaatgctcaaaaaatgatgaaaataagaacatgttaagaacatttttag
gcttgtaaaactaaaaaagttaagaacatccatagGCTTCAAATattctg
gatgttcttattaaaaaaacgtgtattctttaCCATCAGTAGAAATCATA
GCATGATCTCCAAGTTATAGCATAGTGGGCagcacccctccaacccccac
ctgaataaagtcacccccacctgcatagggtaacccccacctgaaaaatg
ctaCCGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTACTTC
ACAAGGATCTGATAGTCGTTTAGGAGAATGTGACAATCTATTGAATAATA
ACATTACTTAGCCAGTACAAACgaaataaattatcttgtccctAGGTAAC
Tgctgttaaaaaaaaatcaattatatgacattatcattaaaaaaatttat
gctggagtaattagttattaacAGTTAGGGGAAGTGGTTCAATttttaaa
ctgatttttgaaaacatgaaccAAAATTTATTCTTGttattttttgatga
tgtaATCCTTTTGAAGCAAGAAAGTTTGACCATGCTGATTCAACAAATGA
AATGACAACCAAAGACAATCCTTTTAACAGGATAGACCTACCATGATGCA
TCCTGTTTTCATGGACCAaccaaaactatggtcaaactTTGAAATATAGT
TTAGAAGCGTTTTATAAAGGTTTGCTTGTGAAAGTACATGACAATCCATG
GGAGAAGTCTTGAGATATTTGTAtgacaaacattttcttttgtctttttt
atagatttcttttttttgtgtCTGATAAAACCTGATTTTGATAAGATAAA
GAATTCAACTACTCCCACTAACTGATTAAAAAGACTGTTGCGTTATCTCA
AGCGACTATTGCGTGAatataaaaacacacaaaattcAATCAAACCGCCT
AATTGATCGCGACACAAAACGGATTGCAAGCTTTATGTTCATTCCAATAA
CAGGAAAAATACACGATCTTGGCATGAAAGCAAGGGAACCAACCAAATTG
GTTTGGATAGTTCCATCCAGCAAAAATAGCATAAAACCTTGGTCATGCCA
TCGCGTAAACCGCTCAGGGCCTCCTAGATATCTTTCGATGCTATACTGTA
GATGTGTATGTTATGTATAGCAATGTTATTTCTCTTACAGATTGGGAAGT
ACAATGCAATTAAAGAACAAAAGGCCAAATTAATCAAGGAAGGTAAATGG
CCACCAAAGGACAATTGAGAGTTGAGCATTTATTGTAATTTTAATAAAGT
TTGTCTTAAAAGAATGCCattattttatcaaatgaaTTTGACTTATGTCA
TGTCCAGTACTCATCCCGGAAACCAGGCAATAAATGCTGAAtcctttctt
tttataaatcttATAACTGTAATGGTACGGTGGTAACAAAGTAAACTAAT
TTTAGTGATATCtgccttaagtggataaattttggcgtggattaatttgg
cgaatgaccaaaatgcgatttttggcggggatttaatttggcgaatgctc
aatattgtaaaaattggcggggatttaatttggtgggTGGGAAGGTTTTA
GTCTCTGGTAAACTAAAAAATACGTGGGATTTGACTAAGAAATGCTTATT
CTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031374XLOC_031374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049424-exon-scaffold_159-1491911889:46946..47892TCONS_00049424-exon-scaffold_159-1491911889:46946..47892Clytia hemisphaericaexon
TCONS_00049424-exon-scaffold_159-1510915933:46946..47892TCONS_00049424-exon-scaffold_159-1510915933:46946..47892Clytia hemisphaericaexon
TCONS_00049424-exon-scaffold_159-1575043694:46946..47892TCONS_00049424-exon-scaffold_159-1575043694:46946..47892Clytia hemisphaericaexon
TCONS_00049424-exon-scaffold_159-1491911889:50086..50549TCONS_00049424-exon-scaffold_159-1491911889:50086..50549Clytia hemisphaericaexon
TCONS_00049424-exon-scaffold_159-1510915933:50086..50549TCONS_00049424-exon-scaffold_159-1510915933:50086..50549Clytia hemisphaericaexon
TCONS_00049424-exon-scaffold_159-1575043694:50086..50549TCONS_00049424-exon-scaffold_159-1575043694:50086..50549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:46946..50549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2634	12.1751	15.6631	21.2475	16.1424	14.7026	17.4909	18.8049	19.4331	13.0321	17.1439	18.0251	13.8438	13.3476	17.0062	17.5179	26.9939	24.0593	7.97199	7.48651	25.0989	22.9885	16.3153	14.9833	23.7423	23.6769	20.3026	15.5471	15.2068	13.8624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top