TCONS_00049412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049412
Unique NameTCONS_00049412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049412 ID=TCONS_00049412|Name=TCONS_00049412|organism=Clytia hemisphaerica|type=transcript|length=411bp
CGTTTGCGGAGTGTTTTTTTCGACAGGTGGACAAATATATCCTTCAAATG
AAGTACAAAGTGTAGCTTTGAATTCAGATTTCCACAAAAATTGGACAATT
CAAACAGCACCAAATGAAGAAGCTAAATCAATTATTCTTTATTATCACAG
TGGCGAAAAGGATCCTAAAGTAGCTTGGCACGGAAGTGTCACCAAATTGG
GAAAATCAACATTCAACAGATcattaaatgtcaatattataGAAAATACT
GAAGTTGTAGTTGAATTCTCAAACATTCAAGAAGCCATGGTTTTATATTT
GATGGTTCATTTTGTAGATGACAAGAGCGGGGAAATGCATGCTTTTTACT
CAAACGTCAAGATTGTTCTAAAAGTCAATGGGGAATGGGCAAATTGGGGA
AGTTGGAATGC
Run BLAST on NCBI

transcript from alignment at scaffold_158:6302..18266-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049412 ID=TCONS_00049412|Name=TCONS_00049412|organism=Clytia hemisphaerica|type=transcript|length=11965bp|location=Sequence derived from alignment at scaffold_158:6302..18266- (Clytia hemisphaerica)
CGTTTGCGGAGTGTTTTTTTCGACAGGTATGTGAAATATTTTCCAATTCC AAATTATGTTTGTGTTTAGTGGCCCTTGAAAACTAAGAAAATAGTATTAG CATTTTTTTGGGGGGCATTTAGGACTGCATTTTTTAAACATTTTTCTTTC TCGTCGCTCAAAAACCCTATCTCTATCCTGTTTCGTATCAAATAAAAAAA TTTGAAAATGATAAATTATGATAAGTTCACGTTTTCTGGCTTACATAATT TTTTTATTCAATTCCTCGCAATCTTGCATTTAAAAGGGGGATCCCTGTTA AAGAGATCATCAGATAGTTTGCAATATTTGGCCAACAGAAACCTCCAATG GTCCTGAGTAGAGCCTCCTAATATTTTGGTTTAACTACTTTCCAATGTTG AGATTTGAAATCTCTAAAAATACAACCCCTTCTCACAGACCCACTTGGAC CCCTTCCCACTAGAAAAATCAGCCAGAATATCGTCCCCGGTGGAAAATTA TACTCCAATTTTTGTTCCCACTGAAAATAGTCAATTAAATCAATCTTCAC TGCCAGATGTTGTGCTATTTTCTCCATCTTCACTGAATTTTTAGACTTGA AAATAAAAGAAGTGAAATCCCCAGCCATAAAAAACCGGGGGGGGGGGGGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNAAAAAACCGGGGGGGGGGGGTACTAGGGCAAGATGGGTT ACGGGGATGTTCTGCTGGTCTGGGTACCTTTTCTAACCTCCACGAGTCCC AGGTAGGGTCGCATAAACACCAAAATAGAAAAATCATTCCCTCGTAGCAG AGATTTGGGAAAAGAGGATAAGAATTGCTGCGCTATTCAGCTTTTGTTCT CTAGGCTAGGCAACCTTTTGTTCTATTAAAATATCTGCGCCCGATCGATT GTTTTAGTTCTGAGCCAATATAGAGGTACAAACAAAAAATGGCAGCCGTG GTTGATATCGAAAGTGAAATAAAAATATTTCTAATATCGGGGGTTTTGGT ATTTTTTATAAGCACTTTTCATTTTGGACATGGCGGATACAGTGTTGGTC GAGCCAAAAAGTTTCAGTTTTAGCCAAAATACTTTCCTCAAGGAATGCTC GAACCAATGTCACAGATTATATTTAAAATTCATTGCATTCAAACACAAAA CGAAGCTGGTAAAGCTAATATAGTTTTTCATTACTTCTCTTCTCTTCATT AACAAAAATTAAACACAAATCTTTATTTGGTCGCGTTGTAATAACAAAAA ATAATAATAAACTGGGTTGGTGTAATTTAAGATGCAAGATCTAACGATTT ACGATTCACGATGCGCGATCCATGTATAAAGTATGCTGATTATTCCTAAT AATTATCATATAACTTAAATTATATAACATAATTCTAAAACAATAGCATA ATCTTTTCTCGCTTTTGTTTACCACGGTAAATTCATGCGATAAAAAAGAA ATGGAACTATGAATAATTACGACCGTAAAATTATGAAAAAAAACTAACTT GCATAATGTTGATAATGGAAGCTAACTTGTGAACATATTACATTAGACAG AGAGTGAAAGTAAACAATATACAAGAAATATTTCTGCTCTCCTCAGTTTT AACAATCATAATCGAATATAGGATTTTCTTTCTTAAAGCAAATAAAAGAA TATATTGGCAAACAATATGTTTTGCGGACCGTAATGTACGAAGCAAAAAA ACTGGTGCTCTATTATGAGAATGAATTTTCTTTCGGTAAACAATTCCCCT ATATTGATTCAAGTTATAAAAAGAGAGAGAGAGTACAGAAGGTGAATGCA CATGGTTTTCACTTTCTTTTTATCTACGACTGATTTAAATATAATTTGTA TAATCTTACATAAATGATGTTTTCAAAAATAATTGAGTTTCAGCGAATGA AAGTTTGTAAATTGCCTAAATATTTAATCATAATTTGCATAATTACGCAT GAATTACCATATTTTATGCACAGATCGCGCATCGTGAATCGTAAATCGTT AGATCGTGCATCTTAAATTACACCAACCCTAATAAACTGGATAAATTTCT GGACTAATTTGATTCTTGTTATGTCAATTTTATTTGTCCTATTGCTTCCA AAAAGTTACTTAAATAATTGCAAGAAAATTAATTACAATAGAAAAACTTT GACTTGATCCTTCCTCACTAAAAGCACCTTGGAAAATAAACATATATTGT GAAACAGTATATGAAAAATCGGTCACTCTTGGATTTAGGGGGGGGGGGGC TCACTAATTCCAATAGAGGTGTGATTCTAAGATAAAAAGCAATTTACGCT TTCAAATAAAATTTTAGAGAGAAAAAGTATGAATATAACCAGACTGCTCA TCAATGTGGGGGCGTACGGGTTTGTCGGTGTGTCGGTATTGACCCTTTTT GCGTCGGTGTTTCGGTGTTTTAAGTAAAAAGTGTCGGTATTTCGGTGTTG GACATGCCTTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNTATTTCAAACGATCTCATAAAGTTTTTGAATCT GCATTTCAGCTATTGAATATCTTATCTATACAAGAATTGTAGCTATGACG AGTAGAATTGTAGCTATGATGAGTAGAATTGTAGCTATAATATAGCTATT TTTGGTAGCTACCCTGTCTCATCCTCTTTTTAAAATTGTGTGTATAATGG TGTTTCTTAACCACTTCTTTACGGGAAATGTTAACTTAAAAAATCATAAT AGTGGGTAACAGGTAAAGAAAGCCAAGTTTGCAGAATTTCTCGAGGTCTC GAATGCAGCACTCATCAAAAATCAACAATCGTTAAATTCTTTCATCCGAA TAATCCATTAACCTATGATTTAGATGCGTTTTTCAGCATTTCTGGCACCT TAAATTTCAAATTTTGCCTCCTCTGGCCAAACCATGGTTGGCCCTCGAAA CATATCTCATTTTGCCTTTCAATATAAAATACTTCCTGTGGTCCTCCCCT TGCAGAGCTCTCTTTGCAGGCTTTCAATGCCAGTTTAGTTTCAGCCTAAA TCAAACGAACTATTTATCTGGATGGCGTAGTAAAATGACTAGTTTTGTGA AAAAGAGAGCGTTTTTAGCCAAATGAGATTTCCTGAAATATTTTTCTGTC GGCGCAAACCATACTTGTGCCTTCTTTTACCCACGTGGCTTTGTTTCAAT CGGTTTCCGACCCTGTCTGGTTAAAGCGTTTTAAAGACAATGTAATGAGA AACATGCTAAGGCTCCAGGGGTTTCGACCCATGAATGATTAGAAAACCCA TTTCTTGGGATCGGGAGGGGTTCTCCGTTATAATGTCATGCCGTGAATAA GTCACCAAATGAGAGATTACCAAAAAGACCGAAACTTGTTGATGCTCGCT GTGGTTTTTGTGGTCTTATGCTGACTAACTTTCTCCTTTTTAGGAGCTCT TTTAAAGCCACTCTATACATACATGAGGCTCTTTNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTTTTGCAAAGATCTTTTAAAAACTTTTTAAATGTTTTTCTTCAAAG TCAACTAAAGTAAGCACTAAAGTAAAAATAGCACTTTAAACCCTTCAAAG TGTTCCTTAAAAATTCTGGATTTATTTATCCACTAGTCGTTGAAAAACTG AGCTTTAAAGATTTGAAACCCTTGAATCGGCGATAGTTTTCTCCAAGAAA AACTGAACTAGTGCACTACTGCGCTCGTGATATTGAGCATTCGTACAGTA CTAAGAATAAAAATCTTAAGCTTGCTCTAAAAGACGTCGGTGTCGGTGTT TTAGGAAAATTTTTTCGGTATTACGGTGATTTAAGAAAAATCTGTCGGTA TTTCGATGTTGGTAACCCTCGTACGCCCCCCACATCAATGCTCAAGAAAA GAGTATTTCATAAGATGAATAATTATATAATGTATATGATGCATGAAAAT AGTCCAGTGTCCAAACTGGAATTTCTATTAAAGCATTTTTGATATCTATA TGGTTGGTTCATTTCTTGTAATTGTAGTCTAGCCTCATTCTGGTGTCTTG TTTGGGACTATTTGCGTAATCAAGCAGGAAATCCTGGTGAAACAGGGATA AAAAGACCTCAATCCAACTACAAACAAACAATGACATCAGATTCCATTGT TGTTTCCTTTGAGTTAAATATGCTTTTCACCCGTCCATCTTATTAGCAGA ATTTGTTGGTGTTTGCAAAGATATTGAACCTTGTACTNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGT ACGTGACAAATTCAGACAAATTTTAAGCCAATTCTCATTGTATACCAACC ACGTGAAGGTACAAAATAATTCATGGATCTAGGTTACTGGGCAGTATGAT GGTAACTAACCTGAAAGTATATAATAATGAAAATGGGAAATTAGGATTTT TGCAGCAAGCTATCATGAACAAATACAGAACACAACAAATCTTAATTCCA CCGACCACTGACAAAAACGGTGACAAAAACCAGTGAAATAAATCTTATAT AACTGGACAATCTATTAACCGATCAGAGCCAATCCATTAATCGGTCAGAG CCAATCTATTAACCGGTCAGAGCAAATCTACTAACCGGTGAGAGCAAATC TACTAACCGGTCAGAGCCAAACCGGTCATAGTTTTATAAATTACATAAGT GAAAATATTAGAACTTTGGTTGCAATTTTCTGTTACATACAAAAACTTGA AATTTCAACCCCAAAAAAATGTTTTTCCTCAGTAAAAGCTAAAAAGACAT CAAGGATAATTTAGCGTACTTACCAAATCTAAAATCCATTGCCATCAAGC AAGTTTTGCTAGGATAACATTATTTTTTCATCTAAAACTAGGAAAAAATA CAACATTTTTAGTCGATTTTGCCCATCTGCCCATCTTCAATCAAAATGCT AAGAAAGTTTGAGGATTTGCCATGTAAAACTAAGCTATAGGTTGTCATTT AATCAATCTTACTGCTACGCATAAAAATTATGTTTGCAACACAAAAAAAA ATATTTTTATTCAACTTAACAAACAAAAAATACACTTTTTCATACGGCAA GTACAAAACGCCTACTACCTACTACTACTACTACTACTACTACTACTACT ACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTAC TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTACTACCT ACTACTTAATACTTACTACCTACTACTTACTACCTACTGTAAAATAGCTC AAAACGGCTCGAAATTACCTTTAAAATATTCAGCATATTAAAATTAGCAA AATCTGAAACTTTGGTGGTAAAAAAGTTAAAACTTCTTCTTTTAGCGTAC TTTGAAGACTTCAAAATATTTTGTCTCTTTTATTTTGTTTATGACTTTTT CCCGCGCTTTTTCTAGAAAGTTTACAGACGCACTTCTTTGTAGAAGAGAA AAATATTTCCTTCGCTCAGTTTTATTTATAAGAATCGATCAATCTAAAAA GTTAAAATACTTTAAGTAAGTATTTCAAGCTATTTTAAGTAAGTAGAGCC CTATGCTTCACTGGGTACTTGCTGAAAATCCTTTGACATGTTTTTGACAT TTATTGACAAAATGACCCTTTTGAACCAAACTATTGACATGGTCGTTAAA TATGACCTTTGTAGACTATTCATTTTATGTAGCAAAAATTCTTATTGTGC TCAATAAGATGCTTTCAGTATCGCAAGCTAAAAATTTCTTAAATTTTCAG AAGGAAAATACTACAAAGAGCTGTTTTAGAGGTGTCAATTTGACCATGTC AAAGTATGGCAAGTATTGACGAAATGAAATTTTTGATAAAAATATTGACA CAGTTATTGAATATTAAATGCTTCGCAAACCAATTCCAAGAAATATTTGG CACCATTTGATATGATGCAGATCATACAATAGGATAGAGATAGATTGACC CCCTATTTATATTACAGAGCCTTTTTTAGACGTTTACGTGTATTCTTATC GTCTTATAATAAGAGTCATCAGAGGGAGTATGTTTAGGAAAAAGGAAAGT TCTTATAATAAGAGTCATAAGAGAGAGTAGGTTTAGGAAAAAAAAAATCA AGATAATGGCCTTTTGTTTTATACTTCAGTATACTTATATGAGGCGAAGA GAATATTTACTCACTACGTAAATATGCTAAATATTCTTTTAGATAACACT TTTTTCAAGTAAATATAAAGCAAAGACTTGTGTGTTAGCATTCAGATATT TCAAAACCAATTTTTTTAGAATAGAGATTTAGAACAAGCGAAGGAGAGTT CTGGTCTGTAAAGTATACAAACTGAGTAGGTAGTAAGTAGTAAGTAGTAG GTAGTAAGTATATAATATTTCAGCTATCTTTGAAGGATGTGCCAAAAAGA TCTAGAAGATGCCAATAAAAACCAAAGCTAGGCTAGTCACCTACAACCTT TTGCCAACCCAAACCACTTTATTTTGACTCTGAAAGACTTTCCAGTAAGG CAATAAACTAGCTAAAAATAAAAAGGTCCCATTCCACATCCAATTTTAGC ATGCCTGCTTCCACCATCTTTTTCTCAAAAAATAAAGCATGCAACAGCAG ATTTTTTTGTCAGTGGAAACCCCAAAAGATCGTTATTTGTTTTTCAGTTG TTTATATAAGTAGGACCCCCTCCAAAGGAGTAAATTCAGACAGTTTTTTT TGAACTGTTTTAATACTGCACATAACGCCATTTTTTCGCAGTACCTTCTT GGCCAAGTTGTTGCCTAGCCTAGCGACTTCAGACGACGCCGAATTCAATG GTCAACAATGAGAAAACAGCGAGCGGCAGCGGTGATTCTTATCCTATTTT CCCAAATCTCTGCTCGTAGGGTGCCTTTTTTTGGAAAATTTGGGGAAAAA GTAGAAAATTTGAGAAAATTTCGGAGTTTCAGTTCCATTCAGGGTCACTT TTTTCGCAAATTTCGAGTCCCACGTAGGATCCAAATATAATCTTTATCGT TTTATTTTAGTTTCAGGTGGACAAATATATCCTTCAAATGAAGTACAAAG TGTAGCTTTGAATTCAGATTTCCACAAAAATTGGACAATTCAAACAGCAC CAAATGAAGAAGCTAAATCAATTATTCTTTATTATCACAGTGGCGAAAAG GATCCTAAAGTAGCTTGGCACGGAAGTGTCACCAAATTGGGAAAATCAAC ATTCAACAGATCATTAAATGTCAATATTATAGAAAATACTGAAGTTGTAG TTGAATTCTCAAACATTCAAGAAGCCATGGTTTTATATTTGATGGTTCAT TTTGTAGATGACAAGAGCGGGGAAATGCATGCTTTTTACTCAAACGTCAA GATTGTTCTAAAAGGTTTATTTAAAGCATACTCACAACTTTTGGAAGTGA ACAGCACCCGGGGGACACTCGATTTCTAAATGACGACATATGTGCCGCCA AAAAATGACTTTAAATAAAATCGACTACCTCAAAAGGTCATAAACTTTTG AAATTTGGACTAAAATTTGAAAAGTTTGGCTGAAATTTTGGGTGACATCA AAAAATGGACAAAATTTTCGAAATGTAGTCTCTCTAAGAGTCGATTTTCC AAAGATTTATTATACACTGGATAAACGACTCATAAAACGATGGAGAGCGA TCATTGTATTTCCTTTGTTTCAGAAAACAATTGATTTTCTAGCTTTGCCC GCAAAAGACAACTGTCATGGCGGCTCGAAGATGTCTGATTTTTAAAAATG TTTATCAGAAAAAAAAGTTGAAAGTAAGGCTAGTATTCCAACCCGGATAC ATTTGTGAAATCTAATGTGAGAAAAACATCATTAGACAAGAAATTCAGAC AAAATGCTTATAGTGACACAAAATTTTCAATTGAAAATATCTTTCCAAGA CTGTCCCCAGAAGAGCTGAAATTAACATACATAAGACTTGAGTGTCTTGG CTCCACTGTGATATAAAAATCCTTTGGAGGCATGTGGTGGCGAGGTGGTT TTTTTGAGGTTGAAGTTTGAAAATTTCCGGTGTCAACATTAAATTTCTTA TACACAACACGTCTTTTGCAACTTTCTCATAGCTTGAAACGTCATAACGA CTTATAATTATCATTAAGTGGAAGAATCTGATTCTCACAGGAAAGTTTTA AGTCTCTTTTGGGAATTGGATAAGTGATTTTCGATAAAAAATGCAATAAA AATGCTTCGAAAAATCATTTAATGAGGGAAGGAGAGTGAACAATAATATC ACTACTGCGGACATAGCNAAAATGCTTCGAAAAATCATTTAATGAGGGAA GGAGAGTGAACAATAATATCACTACTGCGGACATAGCTAGTACACGAGAA ATCGGCAAAAATCTGTTACTTTTATATCCAGTGTATAATAAATCCTTAAA TTTTCAAACTTTGGCTTGGACATACCCGTCATCTCCTAAACCTAGTACCC CCGGATCGATTTAGAGAGCTCCATTTACAACGCTTTCGCATTTCATAAGC CAGCATATTTGCTCTCCTTTTGTTTTAGTCAATGGGGAATGGGCAAATTG GGGAAGTTGGAATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031364XLOC_031364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049412-exon-scaffold_158-1575043694:18241..18266TCONS_00049412-exon-scaffold_158-1575043694:18241..18266Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1575043694:7503..7850TCONS_00049412-exon-scaffold_158-1575043694:7503..7850Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1575043694:6302..6338TCONS_00049412-exon-scaffold_158-1575043694:6302..6338Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1510915933:18241..18266TCONS_00049412-exon-scaffold_158-1510915933:18241..18266Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1510915933:7503..7850TCONS_00049412-exon-scaffold_158-1510915933:7503..7850Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1510915933:6302..6338TCONS_00049412-exon-scaffold_158-1510915933:6302..6338Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1491911889:18241..18266TCONS_00049412-exon-scaffold_158-1491911889:18241..18266Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1491911889:7503..7850TCONS_00049412-exon-scaffold_158-1491911889:7503..7850Clytia hemisphaericaexon
TCONS_00049412-exon-scaffold_158-1491911889:6302..6338TCONS_00049412-exon-scaffold_158-1491911889:6302..6338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_158supercontigscaffold_158:6302..18266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0608113 0 0 2.6355 10.6963 8.57785 13.1967 9.14934 0.303912 0 30.2045 25.9685 8.78484 7.09326 0 0 0.480724 0.905648 0 0 0 0 0 0 0.183076 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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