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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049382 ID=TCONS_00049382|Name=TCONS_00049382|organism=Clytia hemisphaerica|type=transcript|length=911bp
caaaatctaagTTGTGCGTGTTTCAATGTCGTGACTTTCAACTCAGTCGC
GTTTTTTTAGTATCAATTAGATTCTATTAAATTTGCGCGCCTAAATAAGT
TTTTCTAgccaataaaaaaaacttttggattGAAAATCTTTTAGAGTGCA
AAAATAGTTGTAGTAGAGGAAAGCTTTCAAAATGATCGCATCTACTCCTT
TTTCGAAACGTGGAAAGTTCTTAGGAGGAGTGATTCCATCTTCTCCTTTG
TCCAAACGCAGAAAAATCTTAGGAGAGGAAAACTCTTCAGCTATTGTAAG
CACTATAaactttgaaagttttgatgAGTCTTTTGGTATCGAATCTTTAA
AAACATTAACGGATACATCGACCAATTGTCTAGAAAGTTTAAATGGGACT
TTGGAAAATTCGATTGAGAATTCATTACTGCCGAAAGTTGTGGAAACTGA
AACATCGTTAATTGTCGAGTCATTATTAACTGAACCTGAAAGTGAACCAG
AAGAAGAAAACTTATGAAATAGACAGCAAACTATTTGAAGAATCTTGAAc
ataaaaaatcaagaaaagtacatgtttttttttgtaagcataacgcttat
aagcatatgaaggctcagatttgcagaattccaaAGTATAACAtcagcat
atatgtcagcctaaaatatttttcaagtggtcgtttttatctgtttaaaa
aggtttggtagaggtcaagtaaaaaataagactttcCACGACTAGttaac
attccactgctcccaaaatctgaacaaatttcacaaaatttctgaaattt
cattaaaaacttggctcggggtgaatcataatgatgattcttaagcatat
aataagcataaactatgcctgaatgctttgagaacttaagcatacacgag
cctgaccaagg Run BLAST on NCBI protein sequence of TCONS_00049382-protein >TCONS_00049382-protein ID=TCONS_00049382-protein|Name=TCONS_00049382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MFKILQIVCCLFHKFSSSGSLSGSVNNDSTINDVSVSTTFGSNEFSIEFS
KVPFKLSRQLVDVSVNVFKDSIPKDSSKLSKFIVLTIAEEFSSPKIFLRL
DKGEDGITPPKNFPRFEKGVDAIILKAFLYYNYFCTLKDFQSKSFFYWLE
KLI Run BLAST on NCBI transcript from alignment at scaffold_155:169982..170892 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049382 ID=TCONS_00049382|Name=TCONS_00049382|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at scaffold_155:169982..170892 (Clytia hemisphaerica)
ccttggtcaggctcgtgtatgcttaagttctcaaagcattcaggcatagt
ttatgcttattatatgcttaagaatcatcattatgattcaccccgagcca
agtttttaatgaaatttcagaaattttgtgaaatttgttcagattttggg
agcagtggaatgttaaCTAGTCGTGgaaagtcttattttttacttgacct
ctaccaaacctttttaaacagataaaaacgaccacttgaaaaatatttta
ggctgacatatatgctgaTGTTATACTttggaattctgcaaatctgagcc
ttcatatgcttataagcgttatgcttacaaaaaaaaacatgtacttttct
tgattttttatgTTCAAGATTCTTCAAATAGTTTGCTGTCTATTTCATAA
GTTTTCTTCTTCTGGTTCACTTTCAGGTTCAGTTAATAATGACTCGACAA
TTAACGATGTTTCAGTTTCCACAACTTTCGGCAGTAATGAATTCTCAATC
GAATTTTCCAAAGTCCCATTTAAACTTTCTAGACAATTGGTCGATGTATC
CGTTAATGTTTTTAAAGATTCGATACCAAAAGACTcatcaaaactttcaa
agttTATAGTGCTTACAATAGCTGAAGAGTTTTCCTCTCCTAAGATTTTT
CTGCGTTTGGACAAAGGAGAAGATGGAATCACTCCTCCTAAGAACTTTCC
ACGTTTCGAAAAAGGAGTAGATGCGATCATTTTGAAAGCTTTCCTCTACT
ACAACTATTTTTGCACTCTAAAAGATTTTCaatccaaaagttttttttat
tggcTAGAAAAACTTATTTAGGCGCGCAAATTTAATAGAATCTAATTGAT
ACTAAAAAAACGCGACTGAGTTGAAAGTCACGACATTGAAACACGCACAA
cttagattttg Coding sequence (CDS) from alignment at scaffold_155:169982..170892 >TCONS_00049382 ID=TCONS_00049382|Name=TCONS_00049382|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_155:169982..170892 (Clytia hemisphaerica)
atgTTCAAGATTCTTCAAATAGTTTGCTGTCTATTTCATAAGTTTTCTTC
TTCTGGTTCACTTTCAGGTTCAGTTAATAATGACTCGACAATTAACGATG
TTTCAGTTTCCACAACTTTCGGCAGTAATGAATTCTCAATCGAATTTTCC
AAAGTCCCATTTAAACTTTCTAGACAATTGGTCGATGTATCCGTTAATGT
TTTTAAAGATTCGATACCAAAAGACTcatcaaaactttcaaagttTATAG
TGCTTACAATAGCTGAAGAGTTTTCCTCTCCTAAGATTTTTCTGCGTTTG
GACAAAGGAGAAGATGGAATCACTCCTCCTAAGAACTTTCCACGTTTCGA
AAAAGGAGTAGATGCGATCATTTTGAAAGCTTTCCTCTACTACAACTATT
TTTGCACTCTAAAAGATTTTCaatccaaaagttttttttattggcTAGAA
AAACTTATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049382-exon-scaffold_155-1491911889:169982..170892 | TCONS_00049382-exon-scaffold_155-1491911889:169982..170892 | Clytia hemisphaerica | exon |
| TCONS_00049382-exon-scaffold_155-1510915933:169982..170892 | TCONS_00049382-exon-scaffold_155-1510915933:169982..170892 | Clytia hemisphaerica | exon |
| TCONS_00049382-exon-scaffold_155-1575043694:169982..170892 | TCONS_00049382-exon-scaffold_155-1575043694:169982..170892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:169982..170892 . |
Blast
The following BLAST results are available for this feature:
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