TCONS_00049381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049381
Unique NameTCONS_00049381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049381 ID=TCONS_00049381|Name=TCONS_00049381|organism=Clytia hemisphaerica|type=transcript|length=444bp
cttttgccGTTTACTAAGACATTCCAGCAATATGTTTACAACGTCCAAAA
CGAAAATCTAGTTAGAATAAGATCcagcaaaatttcaacctaGGATCCAA
TTCTGCGGAGTAAAATGTAATGGAATGCCTAATTATTCCTCACATTGACG
GAATTTTAACCATGTAGAAATTGCATAGTTTTAGCAATCAAAATTATTCT
AACACATGACGGAAATTAAGCGAAGTCTTAAGATCGATTTTTAAGATTAC
ATCTGGCTATCTTATTTCTAGTAGCCGTACCAGcaaataactttttaaag
agctcaaaaaatgctgattaATGAAGAAACCAGCAACCAGACGGAATCGC
AACAGTGATAAATCTTAAAAAACAGAAACCTACAGGATACATTATTAGTA
TATGCCGGAAAGGTATTTTTCGGAGTTGAGGAAACACTGTTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_155:147639..148082

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049381 ID=TCONS_00049381|Name=TCONS_00049381|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at scaffold_155:147639..148082 (Clytia hemisphaerica)
TTGAACAGTGTTTCCTCAACTCCGAAAAATACCTTTCCGGCATATACTAA
TAATGTATCCTGTAGGTTTCTGTTTTTTAAGATTTATCACTGTTGCGATT
CCGTCTGGTTGCTGGTTTCTTCATtaatcagcattttttgagctctttaa
aaagttatttgCTGGTACGGCTACTAGAAATAAGATAGCCAGATGTAATC
TTAAAAATCGATCTTAAGACTTCGCTTAATTTCCGTCATGTGTTAGAATA
ATTTTGATTGCTAAAACTATGCAATTTCTACATGGTTAAAATTCCGTCAA
TGTGAGGAATAATTAGGCATTCCATTACATTTTACTCCGCAGAATTGGAT
CCtaggttgaaattttgctgGATCTTATTCTAACTAGATTTTCGTTTTGG
ACGTTGTAAACATATTGCTGGAATGTCTTAGTAAACggcaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031345XLOC_031345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049381-exon-scaffold_155-1491911889:147639..148082TCONS_00049381-exon-scaffold_155-1491911889:147639..148082Clytia hemisphaericaexon
TCONS_00049381-exon-scaffold_155-1510915933:147639..148082TCONS_00049381-exon-scaffold_155-1510915933:147639..148082Clytia hemisphaericaexon
TCONS_00049381-exon-scaffold_155-1575043694:147639..148082TCONS_00049381-exon-scaffold_155-1575043694:147639..148082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:147639..148082 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.603876	0.147219	0.34187	0.167233	0.407181	0.16088	0.970473	1.45367	0.254438	0.157581	0	0	0.100405	0.208543	0.428626	0.183993	0.226664	0.929293	0	0	1.31369	1.06795	1.21169	1.57371	0.324178	1.15728	0.207009	0.220925	0.167564	1.19505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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