TCONS_00049359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049359
Unique NameTCONS_00049359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049359 ID=TCONS_00049359|Name=TCONS_00049359|organism=Clytia hemisphaerica|type=transcript|length=253bp
CTTTTAAATACAGATTCACATCCAAATATAAAGgatTCTCATTCTGTGGT
GTCAACAACAGAAAATGGTTATATCCACGATTAACATTTATTCATTGAAC
GGGATTTGTATGTATTGTATGAGGAGCAGATGAGAGACACTGATGTTAGA
AGAAAGATGAATTACATGTATTTACGATAAATCATACGTTATGATGTTTG
ACGTTACTCCCCAGCTGGATTGATCTAAATCAATGTCGTTAATCAACTGG
TCA
Run BLAST on NCBI

transcript from alignment at scaffold_155:7245..7825-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049359 ID=TCONS_00049359|Name=TCONS_00049359|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at scaffold_155:7245..7825- (Clytia hemisphaerica)
CTTTTAAATACAGATTCACATCCAAATATAAAGGTAGGAGTTGGATATTT
ATTTCTTTTTTCTATGAAATGAGAGGGAAAAGTATGTTGTTGGAATGAGA
ATGCTGACAGGCTGATGAGGTTTCTTCATACTGACTCTCTAACTAAAATT
ATTAAATTTTTTTTGATTTTCACAAATCTTCTCTCTTATACATTACTATA
GTACAGGAAACAATTTAGCAAATGTGCTTTCGAAGAACTACTACCCTACT
ACCTTCACTGTCCTTCACTCAAATGTATAGAAAATTAAATATAGCTATAC
CTTTTTTATACCTTGTCAAAATTGCTTTTTTTAAAGAGAGTACATTTTTT
TACATTTTTAGGATTCTCATTCTGTGGTGTCAACAACAGAAAATGGTTAT
ATCCACGATTAACATTTATTCATTGAACGGGATTTGTATGTATTGTATGA
GGAGCAGATGAGAGACACTGATGTTAGAAGAAAGATGAATTACATGTATT
TACGATAAATCATACGTTATGATGTTTGACGTTACTCCCCAGCTGGATTG
ATCTAAATCAATGTCGTTAATCAACTGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031330XLOC_031330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049359-exon-scaffold_155-1575043694:7793..7825TCONS_00049359-exon-scaffold_155-1575043694:7793..7825Clytia hemisphaericaexon
TCONS_00049359-exon-scaffold_155-1575043694:7245..7464TCONS_00049359-exon-scaffold_155-1575043694:7245..7464Clytia hemisphaericaexon
TCONS_00049359-exon-scaffold_155-1510915933:7793..7825TCONS_00049359-exon-scaffold_155-1510915933:7793..7825Clytia hemisphaericaexon
TCONS_00049359-exon-scaffold_155-1510915933:7245..7464TCONS_00049359-exon-scaffold_155-1510915933:7245..7464Clytia hemisphaericaexon
TCONS_00049359-exon-scaffold_155-1491911889:7793..7825TCONS_00049359-exon-scaffold_155-1491911889:7793..7825Clytia hemisphaericaexon
TCONS_00049359-exon-scaffold_155-1491911889:7245..7464TCONS_00049359-exon-scaffold_155-1491911889:7245..7464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:7245..7825 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.778977	0.24586	2.48398	0.848204	75.3629	63.655	81.4797	88.3829	18.5839	39.4439	23.4409	24.5937	17.5192	11.6414	8.39306	8.68745	16.313	15.57	14.4228	22.1997	18.8358	21.3271	8.70314	8.96201	18.7492	23.5786	20.8185	26.6389	24.1888	26.6411
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top