TCONS_00049358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049358
Unique NameTCONS_00049358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049358 ID=TCONS_00049358|Name=TCONS_00049358|organism=Clytia hemisphaerica|type=transcript|length=489bp
CGATATTCCAGTAATTCAAATGGTTGAGCCAAAAAGCGAATTGCTGGTGC
GACCAATAGatgaaaattttgtcaaaaacttGAAAGAAGATATAAGAAAA
CACCCGCTCTGTGTCCCCAACCTGTAATTTGCCTGGTTGAGAGTGTCAAT
CGGTCGGAAGATTACAAAGCTGGACAAACAAATGTTTACACGGCGATTGG
AGGAAACCATCGTCGTCGTGCAATCATGGACCTTATCACAGATGggactt
ttgatgaaaatactACCTTGTCGACTGCCCTTGTTTTCGGTCTTGATGAA
CTTGAATGTTTGAAATTAGGCATAGAGCATAACCGACAAAATCAGCAGCT
GAAGAAGATGANAAATAGGGACAAATTAGAAATTTGTTGGCGTGTTCGAA
AAAGTTCAAACAAGAAACAGTGGAGGCAGCGTTGTTTCACAATCTTCAAT
GAAGAAGAATCCACGTTAGAATATTATTTCGCAATTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_155:179819..181455+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049358 ID=TCONS_00049358|Name=TCONS_00049358|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at scaffold_155:179819..181455+ (Clytia hemisphaerica)
CGATATTCCAGTAATTCAAATGGTTGAGCCAAAAAGCGAATTGCTGGTGC
GACCAATAGatgaaaattttgtcaaaaacttGAAAGAAGATATAAGAAAA
CACCCGCTCTGTGTCCCCAACCTGTAATTTGCCTGGTTGAGAGTGTCAAT
CGGTCGGAAGATTACAAAGCTGGACAAACAAATGTTTACACGGCGATTGG
AGGAAACCATCGTCGTCGTGCAATCATGGACCTTATCACAGATGggactt
ttgatgaaaatactACCTTGTCGACTGCCCTTGTTTTCGGTAAGAGCTTT
CTATAATAAATGTGCCCAATTCCTTTTTTGTGATTATAATGTCAATACTT
TGCTCAGCCTCAATCATGTATTACATCAGAGAGGTATTAGTATGCTATTT
GgatgaatacacgctttttcatttcatcattaaTATTCTTTACTTTTCCG
GAAAAATCTTCTTAAGGTATTCTTTGtcaatttaaaacttttcaacTCTG
TAACACAAAacggaaaaaaatttattgtaaTTTCCTGAATTAATACTATT
TCGATGGCAAAACCCTGAAATTCTTGAAATTGTTAGTGTAAATTATTTTA
GGAGAGAGAAtcaaagaaatctcaaaatagAAATTCTGGGCTTGCAAAAC
GAATTTCATGATTGCATTAATATTATTGTgacattcttaattttttgatc
aATTCCATTGtctttataaagtatattctttaaaaaaagcatgtattaGA
TAAATTTTGAGTGCTTTTGAGCGCTGTGATTGGTATATCCAAAATGGTAT
TTTGTTTGTTACGATTAGGTGTCTAGCTCACGAGATCATTCTAGATAATT
TATTTTCTCAATTCACTACCTCGGTCACTAGTCTACACGTTTTTGTTAAA
AGAATAGTATTTATAGTATTcctaagaaattttcaaaattaagggTCAAA
TATTCTTACATTTTAAGACTTCATACAAACATGAAAATGACCTTTTTGAG
AGTTTGAGCTCATATAAAAAAGACTGTAATTGAGGTAGAACGTTTTGCGT
TCAATTTGAAACATTTGCATAAATGTCCGAAATTTTACGTCGTTTTGAAT
ATGATTTTCTTTTGTCTCAAATTTAGGTCTTGATGAACTTGAATGTTTGA
AATTAGGCATAGAGCATAACCGACAAAATCAGCAGCTGAAGAAGATGANA
TGAACTTGAATGTTTGGAATTAGGCATAGAGCATAACCGACAAAATGCAG
CTGAAGAAGATGACAAATAGGGACAAATTAGAAATTTGTTGGCGTGTTCG
AAAAAGTTCAAACAAGAAACAGTGGAGGCAGCGTTGTTTCACAATCTTCA
ATGAAGAAGTAAGAACAATTCGAAATCATCCGAAGCAACCTTCTGTTTTC
ATTACCATTAGCTTGGTAATTGTTTTTCTGACGCCTAAAATGTTCTGTTT
GCACTATAGATTTTTGCGAGCTTCTTATCAACATTATGCCTTGTACCTTG
CCTTTTTACTAGATGGGATTCTCCTAAACTCGAACTTGTAGTTTTTGCGA
GTTAAAAGACAACAATTATTGACCACATTTCTTCTTCAATCTGCATTTTT
CTAGGAATCCACGTTAGAATATTATTTCGCAATTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031329XLOC_031329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049358-exon-scaffold_155-1491911889:179819..180107TCONS_00049358-exon-scaffold_155-1491911889:179819..180107Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1510915933:179819..180107TCONS_00049358-exon-scaffold_155-1510915933:179819..180107Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1575043694:179819..180107TCONS_00049358-exon-scaffold_155-1575043694:179819..180107Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1491911889:180945..181017TCONS_00049358-exon-scaffold_155-1491911889:180945..181017Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1510915933:180945..181017TCONS_00049358-exon-scaffold_155-1510915933:180945..181017Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1575043694:180945..181017TCONS_00049358-exon-scaffold_155-1575043694:180945..181017Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1491911889:181083..181176TCONS_00049358-exon-scaffold_155-1491911889:181083..181176Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1510915933:181083..181176TCONS_00049358-exon-scaffold_155-1510915933:181083..181176Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1575043694:181083..181176TCONS_00049358-exon-scaffold_155-1575043694:181083..181176Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1491911889:181423..181455TCONS_00049358-exon-scaffold_155-1491911889:181423..181455Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1510915933:181423..181455TCONS_00049358-exon-scaffold_155-1510915933:181423..181455Clytia hemisphaericaexon
TCONS_00049358-exon-scaffold_155-1575043694:181423..181455TCONS_00049358-exon-scaffold_155-1575043694:181423..181455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:179819..181455 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.123559	0.286927	0.140356	0.683482	0.270048	0.651603	0.457517	0.427092	0.132255	0	0.253157	0.252805	0.0875135	0.287792	0	1.90236	0.877435	0	0	0.122507	0.179264	0	0	0.544155	1.57835	0	0	0	0.143284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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