TCONS_00049354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049354
Unique NameTCONS_00049354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049354 ID=TCONS_00049354|Name=TCONS_00049354|organism=Clytia hemisphaerica|type=transcript|length=497bp
CTGGTGTCAAGGGGCAGAATATTGAAAAACTATAATGGATGATTTCACTC
CCCTTGAGCGAGTTTTTCTTGCAAACCCCATTATTCCAAAATTATAAGCA
TCAACATAACATTTGTGGCTGCTCAGCACtccggttactttttcaaagca
gGCTCGACGGGCCCACACTGCACATAGTTAATTTTTCAACCGGCTTTTTT
TCATTGCTTTTGCTTCTGCTTTTGGGGCTGACATGACCCGCTAGGTTGTG
CCATTTCGACATGATTGCTATTAAGTTTTCTTACACTATATTTATTTGTG
TCGTGattctaaattttatttttaaattttaaattctaTTTCCTAGCTCT
ACTTATTTTAATCAATTTAAATATTATAACGCATTACTGTATAATCTAAT
ATTTAATTGCATAGTAAAAAGAAAATCACTGTAGCGGTCTTCTTCGAGGA
ACATTTATCGTGACGtcagttttctcaaaggaaaatgatcactgcgt
Run BLAST on NCBI

transcript from alignment at scaffold_154:888702..889198

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049354 ID=TCONS_00049354|Name=TCONS_00049354|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_154:888702..889198 (Clytia hemisphaerica)
acgcagtgatcattttcctttgagaaaactgaCGTCACGATAAATGTTCC
TCGAAGAAGACCGCTACAGTGATTTTCTTTTTACTATGCAATTAAATATT
AGATTATACAGTAATGCGTTATAATATTTAAATTGATTAAAATAAGTAGA
GCTAGGAAAtagaatttaaaatttaaaaataaaatttagaatCACGACAC
AAATAAATATAGTGTAAGAAAACTTAATAGCAATCATGTCGAAATGGCAC
AACCTAGCGGGTCATGTCAGCCCCAAAAGCAGAAGCAAAAGCAATGAAAA
AAAGCCGGTTGAAAAATTAACTATGTGCAGTGTGGGCCCGTCGAGCctgc
tttgaaaaagtaaccggaGTGCTGAGCAGCCACAAATGTTATGTTGATGC
TTATAATTTTGGAATAATGGGGTTTGCAAGAAAAACTCGCTCAAGGGGAG
TGAAATCATCCATTATAGTTTTTCAATATTCTGCCCCTTGACACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031325XLOC_031325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049354-exon-scaffold_154-1491911889:888702..889198TCONS_00049354-exon-scaffold_154-1491911889:888702..889198Clytia hemisphaericaexon
TCONS_00049354-exon-scaffold_154-1510915933:888702..889198TCONS_00049354-exon-scaffold_154-1510915933:888702..889198Clytia hemisphaericaexon
TCONS_00049354-exon-scaffold_154-1575043694:888702..889198TCONS_00049354-exon-scaffold_154-1575043694:888702..889198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:888702..889198 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123187	0.120126	0	0	32.5603	26.2547	18.6883	23.7231	4.15228	6.3005	2.7457	0.902458	4.83372	5.61545	1.18914	0.225199	0.184951	0	1.44045	0.685149	0	0	0	0	0	0.118039	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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