TCONS_00049349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049349
Unique NameTCONS_00049349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049349 ID=TCONS_00049349|Name=TCONS_00049349|organism=Clytia hemisphaerica|type=transcript|length=2834bp
ttttcagtaataaataaaaaatctcaaTGAAGAAATGGATCAATAAGAAC
TCAAAATAGAACAAAAGATAAACAATTCATGGTCATGTAATGATTATGGT
ATATTAAATTCTTCCAAACAAGACCTAGATAAACATGTAAAAGTGCATAA
TTATGTTTCATTGGAGCATAATATTGACAATAAGTCATCCTCacacaggg
gggggggcacgcagttactacaagacatgatgtgtagtaagtgctttttc
aacacttttttttcaggaccacaaccctttgcagttactaaaccttggta
gtaactgttttcagaaaagatttctaggtaccacccctgtttttgagNNN
NNNNNNNNNNNNNNCTAAATTGCggttatttttcaacctaaagccatttt
tgtgctagattttcttttaatttacttggttaacagctgttgagaatatt
ttaatgataattagggaaagcataatttcaaagttgggtctgagaaaaaa
aattttcgtccatttatagcaaaaatatttttttaaattcattttttgtg
aaaaattttgaaagttctttaaaaagaattaaaatataagcacttactac
accaaaagtgctagttttagtgtttggcacCAACCCCAAACAGCAGTTAC
TACACTGTGTAGTAACTGTTTTCATAACTTCTGAATACAGTACCACCACG
GTAGTAAGTGTCATACTGTCTTGTAGTAACTGCGCCCCCCCCTTCCTCAC
ATTGTGTTAAATTTAGTTCTgaaagtgagaaagaaaatttgataaagGAT
ACACAACAGGGATCTGAATCCGCAACTGTTGTATTGGATATGGAAAGAAT
TGATAATGATAGTAGTGTAACAAAGAGTGGATCATCTGACCAAAATCTAA
ATAATACCTTATGTGCAATATGTGGACAATATATAAATCTCTTGTCAAAG
AATCCAGGAGAGTATTGCAAATGTGAGGAGTGTGATGCGTTTTTTGTAAC
TCAGAATGACCGCAGCATGCATCAACAAAAAGGTATAAGATATAAATGTG
GAGCTTGTCAAAAGCTATTCGCATGCAAAAGTGCTGTGCGAATTCATACA
CCAACACATAAAACAAGTCCCACTAATGTGAACTTGTCTGTATCTAATTC
AGGAGTTTGTTTTGAATGCAAGGACTGTGGTGTATCATTTACAACAAAAC
ACAGCCTTGCTAtccatcaaaacaatggaatagAATATCAATGTACAGTT
TGTCAAAAGCTTTTTGCATGTAAAAGCGCTGTGCTAATTCATGCACAAAC
ACACAGCTTATTCCATCATCATGTTGAATCAAAAGAAACTCTGTCATATA
ACCAAACCTCCCCTAAATTTGATGCAGATCAATGTGGGGTATGTAAGAAA
TCTTTTTCATCTGAACATAGATTGAGACATCATTTGAAAACTCACTCAAA
AGTTCTCACTTCTTGTGACAAATGTGGTAAAGGATTTTCTTTGGAGGAGT
TTTTGGATCATAACAAAAACTGTAGtaagaaaaaatttgttttgaaatgc
aaaatttGCGAGCGATTCTTTTTCGAATTAAGTGCTTTGAATAAGCACAT
GAATATCCATACAAAGCCTTTTAGTTGCAGTAAATGTGCTAGGAGCTTTG
CACGGAAGAAAGCTTTGGAACGTCATCAAAGAACTCGGAAATGCCTCTTC
AAATGTAAGGAatgtgagaaaaatttttctaatACAGATGATTTCATAAA
GCATAAAAGAACTCATTATAAATTTGAATGCAAGGACTGTGGAAAGTTAT
ACaactcaaaaagaaatttattggACCATGAAAATAGCCATAAAGGAATT
AAAGCCTATCCTTGTGAAACTTGCGGGAAATCGTTTTCAACATCTGGTAG
TCTAGCAACACATAAAAAGATGCATGGTCCTCTCTTGTTTAATTGTGAGG
AGTGTGGAAAATGTTTTGCACATAAGCATTCTTTGGAGCGACATGTGTTT
TTACATAAAGACATCAAATCTTTTAAATGTGAAACGTGTGGCaaaggctt
caaatccaaaacaaATCTCAATGGGCACAATAAAACTGTAAAATGCAAAA
GCAAAGAAGGAAATCATGCAGTATGGTTACTGATTTGAATGAAATTAATA
GCTGTAGTGTactcatcatttttttcatcatatcATTCTCATTGTTATTC
GCTAAGCATACCTTAGacaacaaaatttttgacaGGTGTTTaattgggac
aagctggagtttttacaagctcttatttgatttggttggtcattaaccag
taataaaacaattttgttactttttctaaagaacgcgtcatctctatcac
ttcaaataaccaattagtgaagtgtcttataaaaactccagctcatccca
attTGGTGGATTGCTGAAAAGTATATATATTTAGCAGGAATTCAATTTTT
AGCCAAAGCCACAAATCACTattaatttttatcaaaaaacctGCAAGAGA
ATTTATTTTTGCGAATGGCGGAAAGAATGAATTTTGATGGGAACAATGTG
CGGCAGATTTTAAGTAAACCTGCCAAATTCACCAAACTttctttccgcaa
aaatttctatGTTTAAGGTACCTAAgcattttttaatagaaaagacGTGC
TTCTaccagctttctaccctttaggGCTTATAGTCAAACagataaaacaa
aatatttctaccaaattaatgttttaaagttctttttttttaactgagTC
TTCCATTTTATATACCtacttatttttgaaatatgttttgttatattatt
tgccaaaaaaatattattgttaAGTCTTTCATAT
Run BLAST on NCBI

protein sequence of TCONS_00049349-protein

>TCONS_00049349-protein ID=TCONS_00049349-protein|Name=TCONS_00049349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MERIDNDSSVTKSGSSDQNLNNTLCAICGQYINLLSKNPGEYCKCEECDA
FFVTQNDRSMHQQKGIRYKCGACQKLFACKSAVRIHTPTHKTSPTNVNLS
VSNSGVCFECKDCGVSFTTKHSLAIHQNNGIEYQCTVCQKLFACKSAVLI
HAQTHSLFHHHVESKETLSYNQTSPKFDADQCGVCKKSFSSEHRLRHHLK
THSKVLTSCDKCGKGFSLEEFLDHNKNCSKKKFVLKCKICERFFFELSAL
NKHMNIHTKPFSCSKCARSFARKKALERHQRTRKCLFKCKECEKNFSNTD
DFIKHKRTHYKFECKDCGKLYNSKRNLLDHENSHKGIKAYPCETCGKSFS
TSGSLATHKKMHGPLLFNCEECGKCFAHKHSLERHVFLHKDIKSFKCETC
GKGFKSKTNLNGHNKTVKCKSKEGNHAVWLLI
Run BLAST on NCBI

transcript from alignment at scaffold_154:830513..833346

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049349 ID=TCONS_00049349|Name=TCONS_00049349|organism=Clytia hemisphaerica|type=transcript|length=2834bp|location=Sequence derived from alignment at scaffold_154:830513..833346 (Clytia hemisphaerica)
ATATGAAAGACTtaacaataatatttttttggcaaataatataacaaaac
atatttcaaaaataagtaGGTATATAAAATGGAAGActcagttaaaaaaa
aagaactttaaaacattaatttggtagaaatattttgttttatctGTTTG
ACTATAAGCcctaaagggtagaaagctggtAGAAGCACgtcttttctatt
aaaaaatgcTTAGGTACCTTAAACatagaaatttttgcggaaagaaAGTT
TGGTGAATTTGGCAGGTTTACTTAAAATCTGCCGCACATTGTTCCCATCA
AAATTCATTCTTTCCGCCATTCGCAAAAATAAATTCTCTTGCaggttttt
tgataaaaattaatAGTGATTTGTGGCTTTGGCTAAAAATTGAATTCCTG
CTAAATATATATACTTTTCAGCAATCCACCAaattgggatgagctggagt
ttttataagacacttcactaattggttatttgaagtgatagagatgacgc
gttctttagaaaaagtaacaaaattgttttattactggttaatgaccaac
caaatcaaataagagcttgtaaaaactccagcttgtcccaattAAACACC
tgtcaaaaattttgttgtCTAAGGTATGCTTAGCGAATAACAATGAGAAT
gatatgatgaaaaaaatgatgagtACACTACAGCTATTAATTTCATTCAA
ATCAGTAACCATACTGCATGATTTCCTTCTTTGCTTTTGCATTTTACAGT
TTTATTGTGCCCATTGAGATttgttttggatttgaagcctttGCCACACG
TTTCACATTTAAAAGATTTGATGTCTTTATGTAAAAACACATGTCGCTCC
AAAGAATGCTTATGTGCAAAACATTTTCCACACTCCTCACAATTAAACAA
GAGAGGACCATGCATCTTTTTATGTGTTGCTAGACTACCAGATGTTGAAA
ACGATTTCCCGCAAGTTTCACAAGGATAGGCTTTAATTCCTTTATGGCTA
TTTTCATGGTccaataaatttctttttgagttGTATAACTTTCCACAGTC
CTTGCATTCAAATTTATAATGAGTTCTTTTATGCTTTATGAAATCATCTG
TattagaaaaatttttctcacatTCCTTACATTTGAAGAGGCATTTCCGA
GTTCTTTGATGACGTTCCAAAGCTTTCTTCCGTGCAAAGCTCCTAGCACA
TTTACTGCAACTAAAAGGCTTTGTATGGATATTCATGTGCTTATTCAAAG
CACTTAATTCGAAAAAGAATCGCTCGCaaattttgcatttcaaaacaaat
tttttcttaCTACAGTTTTTGTTATGATCCAAAAACTCCTCCAAAGAAAA
TCCTTTACCACATTTGTCACAAGAAGTGAGAACTTTTGAGTGAGTTTTCA
AATGATGTCTCAATCTATGTTCAGATGAAAAAGATTTCTTACATACCCCA
CATTGATCTGCATCAAATTTAGGGGAGGTTTGGTTATATGACAGAGTTTC
TTTTGATTCAACATGATGATGGAATAAGCTGTGTGTTTGTGCATGAATTA
GCACAGCGCTTTTACATGCAAAAAGCTTTTGACAAACTGTACATTGATAT
TctattccattgttttgatggaTAGCAAGGCTGTGTTTTGTTGTAAATGA
TACACCACAGTCCTTGCATTCAAAACAAACTCCTGAATTAGATACAGACA
AGTTCACATTAGTGGGACTTGTTTTATGTGTTGGTGTATGAATTCGCACA
GCACTTTTGCATGCGAATAGCTTTTGACAAGCTCCACATTTATATCTTAT
ACCTTTTTGTTGATGCATGCTGCGGTCATTCTGAGTTACAAAAAACGCAT
CACACTCCTCACATTTGCAATACTCTCCTGGATTCTTTGACAAGAGATTT
ATATATTGTCCACATATTGCACATAAGGTATTATTTAGATTTTGGTCAGA
TGATCCACTCTTTGTTACACTACTATCATTATCAATTCTTTCCATATCCA
ATACAACAGTTGCGGATTCAGATCCCTGTTGTGTATCctttatcaaattt
tctttctcactttcAGAACTAAATTTAACACAATGTGAGGAAGGGGGGGG
CGCAGTTACTACAAGACAGTATGACACTTACTACCGTGGTGGTACTGTAT
TCAGAAGTTATGAAAACAGTTACTACACAGTGTAGTAACTGCTGTTTGGG
GTTGgtgccaaacactaaaactagcacttttggtgtagtaagtgcttata
ttttaattctttttaaagaactttcaaaatttttcacaaaaaatgaattt
aaaaaaatatttttgctataaatggacgaaaattttttttctcagaccca
actttgaaattatgctttccctaattatcattaaaatattctcaacagct
gttaaccaagtaaattaaaagaaaatctagcacaaaaatggctttaggtt
gaaaaataaccGCAATTTAGNNNNNNNNNNNNNNNNNctcaaaaacaggg
gtggtacctagaaatcttttctgaaaacagttactaccaaggtttagtaa
ctgcaaagggttgtggtcctgaaaaaaaagtgttgaaaaagcacttacta
cacatcatgtcttgtagtaactgcgtgcccccccccctgtgtGAGGATGA
CTTATTGTCAATATTATGCTCCAATGAAACATAATTATGCACTTTTACAT
GTTTATCTAGGTCTTGTTTGGAAGAATTTAATATACCATAATCATTACAT
GACCATGAATTGTTTATCTTTTGTTCTATTTTGAGTTCTTATTGATCCAT
TTCTTCAttgagattttttatttattactgaaaa

Coding sequence (CDS) from alignment at scaffold_154:830513..833346

>TCONS_00049349 ID=TCONS_00049349|Name=TCONS_00049349|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_154:830513..833346 (Clytia hemisphaerica)
TCAAATCAGTAACCATACTGCATGATTTCCTTCTTTGCTTTTGCATTTTA
CAGTTTTATTGTGCCCATTGAGATttgttttggatttgaagcctttGCCA
CACGTTTCACATTTAAAAGATTTGATGTCTTTATGTAAAAACACATGTCG
CTCCAAAGAATGCTTATGTGCAAAACATTTTCCACACTCCTCACAATTAA
ACAAGAGAGGACCATGCATCTTTTTATGTGTTGCTAGACTACCAGATGTT
GAAAACGATTTCCCGCAAGTTTCACAAGGATAGGCTTTAATTCCTTTATG
GCTATTTTCATGGTccaataaatttctttttgagttGTATAACTTTCCAC
AGTCCTTGCATTCAAATTTATAATGAGTTCTTTTATGCTTTATGAAATCA
TCTGTattagaaaaatttttctcacatTCCTTACATTTGAAGAGGCATTT
CCGAGTTCTTTGATGACGTTCCAAAGCTTTCTTCCGTGCAAAGCTCCTAG
CACATTTACTGCAACTAAAAGGCTTTGTATGGATATTCATGTGCTTATTC
AAAGCACTTAATTCGAAAAAGAATCGCTCGCaaattttgcatttcaaaac
aaattttttcttaCTACAGTTTTTGTTATGATCCAAAAACTCCTCCAAAG
AAAATCCTTTACCACATTTGTCACAAGAAGTGAGAACTTTTGAGTGAGTT
TTCAAATGATGTCTCAATCTATGTTCAGATGAAAAAGATTTCTTACATAC
CCCACATTGATCTGCATCAAATTTAGGGGAGGTTTGGTTATATGACAGAG
TTTCTTTTGATTCAACATGATGATGGAATAAGCTGTGTGTTTGTGCATGA
ATTAGCACAGCGCTTTTACATGCAAAAAGCTTTTGACAAACTGTACATTG
ATATTctattccattgttttgatggaTAGCAAGGCTGTGTTTTGTTGTAA
ATGATACACCACAGTCCTTGCATTCAAAACAAACTCCTGAATTAGATACA
GACAAGTTCACATTAGTGGGACTTGTTTTATGTGTTGGTGTATGAATTCG
CACAGCACTTTTGCATGCGAATAGCTTTTGACAAGCTCCACATTTATATC
TTATACCTTTTTGTTGATGCATGCTGCGGTCATTCTGAGTTACAAAAAAC
GCATCACACTCCTCACATTTGCAATACTCTCCTGGATTCTTTGACAAGAG
ATTTATATATTGTCCACATATTGCACATAAGGTATTATTTAGATTTTGGT
CAGATGATCCACTCTTTGTTACACTACTATCATTATCAATTCTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031320XLOC_031320Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049349-proteinTCONS_00049349-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049349-exon-scaffold_154-1491911889:830513..833346TCONS_00049349-exon-scaffold_154-1491911889:830513..833346Clytia hemisphaericaexon
TCONS_00049349-exon-scaffold_154-1510915933:830513..833346TCONS_00049349-exon-scaffold_154-1510915933:830513..833346Clytia hemisphaericaexon
TCONS_00049349-exon-scaffold_154-1575043694:830513..833346TCONS_00049349-exon-scaffold_154-1575043694:830513..833346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:830513..833346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2209	13.5276	5.0227	4.08764	9.49781	7.34428	7.69487	9.15798	6.49772	4.96962	6.45101	4.52274	5.42208	5.26041	5.09941	4.62863	6.15362	5.88885	3.72484	3.70038	8.63458	7.16567	21.9071	21.1677	5.79502	6.68585	8.90678	9.39951	12.1582	13.309
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00049349 vs. Swiss-Prot (Human)
Match: ZN182 (Zinc finger protein 182 OS=Homo sapiens GN=ZNF182 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 8.941e-46
Identity = 142/483 (29.40%), Postives = 227/483 (47.00%), Query Frame = 3 
Query:  786 NLIKDTQQGSESATVVLDMERIDNDSSVTKSGSSDQNLNNTLCAICGQYINLLSKNPG-EYCKCEECDAFFVTQNDRSMHQQ--KGIR-YKCGACQKLFACKSAVRIHTPTH----------------KTSPTNVNLSVSNSGVCFECKDCGVSFTTKHSLAIHQNNGI---EYQCTVCQKLFACKSAVLIHAQTHSLFHHH---------VESKETLSYNQTSPKFDADQCGVCKKSFSSEHRLRHHLKTHS-KVLTSCDKCGKGFSLEEFLDHNKNCSKKKFVLKCKICERFFFELSALNKHMNIHT--KPFSCSKCARSFARKKALERHQR--TRKCLFKCKECEKNFSNTDDFIKHKRTHYK---FECKDCGKLYNSKRNLLDHENSHKGIKAYPCETCGKSFSTSGSLATHKKMH-GPLLFNCEECGKCFAHKHSLERHVFLHKDIKSFKCETCGKGFKSKTNLNGHNKTVKCKSKEG 2111
            NL+   Q+  +  +   +M  +DN    ++S  S +N  +  CA    +      NPG +    +EC      +   S+HQ+   G + ++C AC+K F+ KS + +H  TH                + S   ++L        FEC +CG +F  K ++ IH         Y+C  C K F  KS +++H +TH+    +         ++  + + ++ T       +C  CKK+FS +  L  H +TH+ +    C +CGK F+ +  L  ++     +   +C +C + F + S L  H   H+  KPF C++C ++F++K  L  HQR  T +  ++C ECEK FS     I H+RTH +   ++C +CGK +  K  L+ H+  H G K Y C  C K+FS    L  H++ H G   + C ECGK F  K +   H   H   K +KC  CGK F  K+NL  H +T   K   G
Sbjct:  149 NLVASIQRPDKHESFGNNM--VDNLDLFSRS--SAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHAGKKAHG 627
The following BLAST results are available for this feature:
BLAST of TCONS_00049349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN1828.941e-4629.40Zinc finger protein 182 OS=Homo sapiens GN=ZNF182 ... [more]
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