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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049299 ID=TCONS_00049299|Name=TCONS_00049299|organism=Clytia hemisphaerica|type=transcript|length=2583bp
TAAACATTGGGACAGACGCACTACTGCTGCGCCAGACAAAAACTTTAAGA
CTGTTTCCTTATTTTTCGATGGAATACTTTTTGTTACATTTCTAGAAAGG
AGCCATAGAgtgaaatcaagattttcttcCTGTACAAGTATCACTTGGTC
GCGTCGCAAACTATTacgttttgtttgttttgtgaTACCATTTCATTACA
CAGTAAATTGTAAACACACTAAATGAAAGAGTTGTGCTGATTAACATTTT
GTATTTAAAAAGAAGAACGATTTATATCTTGTAATTATCAATTCATTGAA
ATTCtacaaaacgaaaaaaaagaGTAATAAAGAATAATTAAGGCGTCGGC
AAAATCATTTTGGGTTTTCGAAGAATATTATAACAAAAAAGGAAAgagat
ttttcactttttcgggGAAGCAAGTGAGCCATGGTGTTAGTCaaagaaat
tgtcaaaattataaagaaaagtAAACCGTCACTTTTGAACGAAGAAGGAG
AATCGAGATCGGATCACAGGATGGGTTTACGTATGCAACTGACCGCCTTC
TTAAACGCCACTCTCGGTATAATACTACTCATCATCGCCCTGTGTACAGA
TCATTGGTGTGGGCGGGAATCTGATATGTTGACCATTTATGAAGGACTGT
GGACAAAATGTACTGACCACCATCACGAGGGCGGCCGCCCGAAATTTTGT
ACCAAATTGGAAGGGACTTTCGGACACGATCAATataaCTATTATCCAGT
tcttgtgtttttatttttggcatGCTTCGTACATCTTATTTCATTCGTAA
TGTCCATCGTACTACTATGTCAACGACAAAACATGAAGTTAGAGAAAGCT
CTTGCTATCGTACAGTTTATCGTTCTACTTTTGACGGTTGTTGGACTCGT
ATTTTACGTCATAACTTATGATGACAATTATTACGGCCTGAAGTGGAGTT
GCGCCCTAGGGTGGGGATCAACTCTGTGTTTCTTGGCCGCCCTTGTATTT
TTACTGATTGATATCGACCGACAGAACAAGACAGCGGATAACAACTAGCA
GaacaataaattttcaatgGGTTATTGGAGAGGCTCTAAATGAATAATGG
TCAAAGAGTAAACTCTAAAAACACAGACAGAATtatgaaaattatctgaa
agCAATACAACTGCGGTCCGGTTGTTATGAGTGTTACCTCGGAGGAATTT
CTTTTGAAGAGTATTGACCTAAGAATGCCGTCATTTATACATGTGATTAT
TGCGTCTATCATGACACTtaaagtaccttatcggccaaaactaagtctaa
attttgacttgttgactaaaattagggccgactaaaatttgggctgacta
aaatttgggccgactaaaaattttggccaaattaaaagtttataattaag
ctttccttaaccAACTTTTTTGAATACCATATCATTTTACGTCCACTACA
ATTCAATATTTCGTCCGCTATTATTCATTAtatattagtcggcccttagt
gactaaattttgacgaggtgactaaaattagggccgactaataattaagg
ctggttaagttttggccgataacgTAATACATTTAGGacattgatttttg
aaatataggTTATTTCGTGAATCATAGCCTCTAGAAGATATTGAACGATG
TTAAACCTACATTTTTGTGACCTATTTATTGACGgcttcttaagggctct
gaccatagtgaatttttcataatcNttaagggattcgattaaaaagcaat
ttataaaggcaattctttgttaaaagtgttaaggaacctgaaatacaact
tttttgttaaaataccACAATTTtcggactatggtcagagcccttaagaa
ctATAAAATTTGTTGATCAAAaactaaaatcgaaatatgaaaagtgacta
cacaatatattgacgaacaatatttgacaatatcgttttcggaccgtaat
gtacgaagtaaatagCAGGTActttattataaaaagaaaatttctttctg
taaacaattcccctatattgttggaatattgcaaatggagctgacaatat
attgcggacaacttttcaatatattgtctgacaatatattgtgtagtgta
tgtagctcTTAACTTCCAGGTGTTCTTGAAACTTTGACGGTCAGTTNatt
tgatgaagaagaaaaggaagacttttgcgaggaagagtatttcaactttg
aagagcttagtttcggcgaagaaaaaacattttgaaaaatttttcacagt
agatggtgtatcttttaccgaacaataaaaatttttgcggaaaatttttg
cNAggtgtaaacaatccccctatattgcctggcaatatattgtgtagtgt
atgtagtccTTAAGGTCCAGGTGTTCtaatgaaatcaaaatattttgcag
tttttaatgaaatcaaaatatcCTTTTATTACCTCTATTTGCTTGTTAAA
TATTTaatacattttatttttctttcaaatttgtgcattttcatcttatt
tttttttccgaattattttgtacaaaagtagaaaataaatcaatttaTAC
ATGAAAATTATACATAAAAAATCTATAACTGAA Run BLAST on NCBI transcript from alignment at scaffold_154:641485..645870- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049299 ID=TCONS_00049299|Name=TCONS_00049299|organism=Clytia hemisphaerica|type=transcript|length=4386bp|location=Sequence derived from alignment at scaffold_154:641485..645870- (Clytia hemisphaerica)
TAAACATTGGGACAGACGCACTACTGCTGCGCCAGACAAAAACTTTAAGA
CTGTTTCCTTATTTTTCGATGGAATACTTTTTGTTACATTTCTAGAAAGG
AGCCATAGAGTGAAATCAAGATTTTCTTCCTGTACAAGTATCACTTGGTC
GCGTCGCAAACTATTACGTTTTGTTTGTTTTGTGATACCATTTCATTACA
CAGTAAATTGTAAACACACTAAATGAAAGAGTTGTGCTGATTAACATTTT
GTATTTAAAAAGAAGAACGATTTATATCTTGTAATTATCAATTCATTGAA
ATTCTACAAAACGAAAAAAAAGAGTAATAAAGAATAATTAAGGCGTCGGC
AAAATCATTTTGGGTTTTCGAAGAATATTATAACAAAAAAGGAAAGAGAT
TTTTCACTTTTTCGGGGAAGCAAGTGAGCCATGGTGTTAGTCAAAGAAAT
TGTCAAAATTATAAAGAAAAGTAAACCGTCACTTTTGAACGAAGAAGGAG
AATCGAGATCGGGTAAGTTAGTATAATATAGAATAAGTCCGGTATACACA
CAAAATATCTTATATAAATAAAACACTAGAGAGAGCTCAGTCACTGGCTG
AGGCAAAACAACGCGCTGTCTTTGCTAAGTAGATCTCAACTACCGTGGTT
CTATCTAGTATTTCTAGATGTCTGTGGATACACATAGCGATATTCGTACG
TTTATATGACGCTATATGGATGTATGGACCTTAGATGGATGTTCTTTGAT
ATTTTGTGTAGAACCAGTCCAAGTATCTGGTATTACGATTGCAGATTGGA
GGCCACCCACACTTAAGCTCTAATGGAAAGAGTCAATTTCCCAAGCGGAG
AGGACTTATATGTCGCATTTGGATTCCGGTTCGAGTTTCCTTATGCGTAC
CTCCCCTATGTTAAAAACTTTTCCGACCTTTAGTACCGCTTAACAAAGAC
TCAATAATATCAAATCTGTTAACTTGTTAAAGATTAAAGCTTCAATTCTA
CTTACTTTACTCAATCTACTTGGAATTCTAGCAAAAATAACACAGACTTG
AAAAATCATCAAAATTTTACTTTTACTTAAGCCAAATGCTATTATTAAGA
GGTGTTTGTGATTAAAATGGCTGAAGAAATATGAATGAGCGTCATGGTAC
TATGTGTCCTTCAGAAATAATGAAAAATAACACTAGAACCTTTTTTTTCT
TCATAATTTTAGAAATAAAAAAAGGATGAAAAAGTTCTATCTGCTAATTA
AATACTTCATAAAATCATATTAGATCAATGTAAAAGAATTTAAGTTGATG
TTTTCGTAGTTTTTGGATTCAATCTTTTGACTTTTATCTTTTCAGTCATT
TTTTCTCAAATTGAAATTAATAAAATCAAAGAAAATGTTAAAGGGTTGAA
CAGGAGAACCCGTCCTCCCTCTAAGAAATGCAGACTCAGATTTACGTAGC
ATCGTTACCATTTTGGTATCTAATCATCTATTTTTTCAAATTCATACTTC
TAGATCACAGGATGGGTTTACGTATGCAACTGACCGCCTTCTTAAACGCC
ACTCTCGGTATAATACTACTCATCATCGCCCTGTGTACAGATCATTGGTG
TGGGCGGGAATCTGATATGTTGACCATTTATGAAGGACTGTGGACAAAAT
GTACTGACCACCATCACGAGGGCGGCCGCCCGAAATTTTGTACCAAATTG
GAAGGGACTTTCGGACACGATCAATGTAAGTTCTATTGAAAACTTTTAGT
TATTTCTACACCACAACAACATGCTTTTTTTATAAGAATCTACTCTATAA
GAATGATCACGATGAAATCGGCCAAAAATTTAGGTATAAGCTAAGAATAC
CAACATCATGGAATTTGGAAAATGAACCTAAGAATGCCACTCTTAAAACT
TCCATATGAATTGCCAATTTTCTCCAGCAATGCAAAAAGCTTTCACAAAA
ATGCCTTTTAATATTTAGCTTGAGATGTGTATATTGCATGCTAAATTTAG
ACTGAGTTTGGGTCCTAGCCTAAGAATACGTCATAAGAATATTTTAGGAT
GTTTTTCAAAAAGCTAAGAATATCCATGATGAAATGGAAAAACCATTCTT
GTGAAAAAAAGCGTGTAATTAAAAAAGTTGCACAAAAATGACCACTGAAA
AACAATATTTTGAGCCTCATTTCCATCCAAACTTAGGACATAAGAACAAA
TTAAGAACAATCTGAGGCACAACATTGACAAAATGTCACTTTAAATTCAA
AAAATCCTAAATCTGCTATTTAAAAAACAATGACTTCCTTGATATTGGAT
AGGCTAGGGAGTAATATTTTTCGGATGAACTCCAGTTGTAATTTTTGTGT
ATTCTTTTCTATTTTTAGATAACTATTATCCAGTTCTTGTGTTTTTATTT
TTGGCATGCTTCGTACATCTTATTTCATTCGTAATGTCCATCGTACTACT
ATGTCAACGACAAAACATGAAGTTAGAGAAAGCTCTTGCTATCGTACAGT
TTATCGTTCGTAAGTAACTTTATTCAACCCATATAACCTGGGTTTTTTGA
GGAATAATAATCGGGGGAGGCCCTGAAAAGTCCTGAAATTTTGTATGGAA
TGCATTCTTAAAGCTCTTGATAAAAATGATTTGAACTTTGAAGCTGACGT
CTTTCAAATTTTTAAATTTCTATTTCAGTACTTTTGACGGTTGTTGGACT
CGTATTTTACGTCATAACTTATGATGACAATTATTACGGCCTGAAGTGGA
GTTGCGCCCTAGGGTGGGGATCAACTCTGTGTTTCTTGGCCGCCCTTGTA
TTTTTACTGATTGATATCGACCGACAGAACAAGACAGCGGATAACAACTA
GCAGAACAATAAATTTTCAATGGGTTATTGGAGAGGCTCTAAATGAATAA
TGGTCAAAGAGTAAACTCTAAAAACACAGACAGAATTATGAAAATTATCT
GAAAGCAATACAACTGCGGTCCGGTTGTTATGAGTGTTACCTCGGAGGAA
TTTCTTTTGAAGAGTATTGACCTAAGAATGCCGTCATTTATACATGTGAT
TATTGCGTCTATCATGACACTTAAAGTACCTTATCGGCCAAAACTAAGTC
TAAATTTTGACTTGTTGACTAAAATTAGGGCCGACTAAAATTTGGGCTGA
CTAAAATTTGGGCCGACTAAAAATTTTGGCCAAATTAAAAGTTTATAATT
AAGCTTTCCTTAACCAACTTTTTTGAATACCATATCATTTTACGTCCACT
ACAATTCAATATTTCGTCCGCTATTATTCATTATATATTAGTCGGCCCTT
AGTGACTAAATTTTGACGAGGTGACTAAAATTAGGGCCGACTAATAATTA
AGGCTGGTTAAGTTTTGGCCGATAACGTAATACATTTAGGACATTGATTT
TTGAAATATAGGTTATTTCGTGAATCATAGCCTCTAGAAGATATTGAACG
ATGTTAAACCTACATTTTTGTGACCTATTTATTGACGGCTTCTTAAGGGC
TCTGACCATAGTGAATTTTTCATAATCNTTAAGGGATTCGATTAAAAAGC
AATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAGGAACCTGAAATACA
ACTTTTTTGTTAAAATACCACAATTTTCGGACTATGGTCAGAGCCCTTAA
GAACTATAAAATTTGTTGATCAAAAACTAAAATCGAAATATGAAAAGTGA
CTACACAATATATTGACGAACAATATTTGACAATATCGTTTTCGGACCGT
AATGTACGAAGTAAATAGCAGGTACTTTATTATAAAAAGAAAATTTCTTT
CTGTAAACAATTCCCCTATATTGTTGGAATATTGCAAATGGAGCTGACAA
TATATTGCGGACAACTTTTCAATATATTGTCTGACAATATATTGTGTAGT
GTATGTAGCTCTTAACTTCCAGGTGTTCTTGAAACTTTGACGGTCAGTTN
ATTTGATGAAGAAGAAAAGGAAGACTTTTGCGAGGAAGAGTATTTCAACT
TTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAATTTTTCAC
AGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTGCGGAAAATTT
TTGCNAGGTGTAAACAATCCCCCTATATTGCCTGGCAATATATTGTGTAG
TGTATGTAGTCCTTAAGGTCCAGGTGTTCTAATGAAATCAAAATATTTTG
CAGTTTTTAATGAAATCAAAATATCCTTTTATTACCTCTATTTGCTTGTT
AAATATTTAATACATTTTATTTTTCTTTCAAATTTGTGCATTTTCATCTT
ATTTTTTTTTCCGAATTATTTTGTACAAAAGTAGAAAATAAATCAATTTA
TACATGAAAATTATACATAAAAAATCTATAACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049299-exon-scaffold_154-1575043694:645359..645870 | TCONS_00049299-exon-scaffold_154-1575043694:645359..645870 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1575043694:644146..644367 | TCONS_00049299-exon-scaffold_154-1575043694:644146..644367 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1575043694:643362..643502 | TCONS_00049299-exon-scaffold_154-1575043694:643362..643502 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1575043694:641485..643192 | TCONS_00049299-exon-scaffold_154-1575043694:641485..643192 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1510915933:645359..645870 | TCONS_00049299-exon-scaffold_154-1510915933:645359..645870 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1510915933:644146..644367 | TCONS_00049299-exon-scaffold_154-1510915933:644146..644367 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1510915933:643362..643502 | TCONS_00049299-exon-scaffold_154-1510915933:643362..643502 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1510915933:641485..643192 | TCONS_00049299-exon-scaffold_154-1510915933:641485..643192 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1491911889:645359..645870 | TCONS_00049299-exon-scaffold_154-1491911889:645359..645870 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1491911889:644146..644367 | TCONS_00049299-exon-scaffold_154-1491911889:644146..644367 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1491911889:643362..643502 | TCONS_00049299-exon-scaffold_154-1491911889:643362..643502 | Clytia hemisphaerica | exon |
| TCONS_00049299-exon-scaffold_154-1491911889:641485..643192 | TCONS_00049299-exon-scaffold_154-1491911889:641485..643192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:641485..645870 - |
Blast
The following BLAST results are available for this feature:
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