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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049298 ID=TCONS_00049298|Name=TCONS_00049298|organism=Clytia hemisphaerica|type=transcript|length=2742bp
TTCTGCATTAAGTTTATAAAACAGTGTTCGAATTTGAAAGGATGTTTAAC
CGTGTTTGAAAGCAACCATTAATATTTTTGGTTGCGAAAATATCCTGCAA
CATTTATTTTGTAGCTTCAGGCAGCTTTCAAAAATATACTGCAAAACTGT
ATTTTCTGGACTGTTGCTTTTATTTTGGTGAAGGTTCACATTACCATGAA
CTTGGAAGGTTTAATGTTTTACAAATATTAATTGCATCTGGAAAGAACAT
ACATAATTGTTGAATAAGTTTTTAAACATAATGgctttgatttattgatt
taggCTAGAAAGGTCAAACATATTGGTTGATTCAGATAAAATCTATGGTT
TTGCAATTGATTCTGGTACCCTACTGGTTACGTACTGGTAAACGAGGTTC
CAACGTTCGAAATTTCACGGATTCTTCTTACAATGACTTGGTTTAAAGCC
TTTGTTTAAACCTTGCCAAGTTTTAGTTCCAGGTCAAACAATATAATTCA
ACCTGGATGAAAATACAGAACAACCAAGAAACCGCCCTGGACGACGCCCT
GATGCGAGGGCGTTTAGCATCATTGACTCTTGTCATGTTGATCATGCTAG
TATCATTAGATTATATTTTGACAGCAAAGAACCATAAGCCAAGCAATcac
aagaaaaacaacaatagtAAGAAGCCACCAAAACCTAATAAACTatcaaa
aggaaaaacaaaactGAAACAAGCGCTTAAGAAGACGGCACCAACACAGA
CCATAGTACCAAAATATCCACGACTGTCCGCATTCTTTGCGACCCGTCCG
GATATAAAACCACACAGCAAGTTAACgcagtgtgacgtcataaccaACAA
GGAACAATGTATATACAGGACTATACCAAGGAAAACACATTGTCTACTCT
TTCAGAATCTGATAAATGATTTAGCTCCATTTTATAGACGTTTTATTGCA
AGAAGTCGGTTATACAGCTTTGCAAAACATGAAGTAAAAAATGTGCAGAT
CAATACTTGTGCAAGGACGATGACACTGATTACAAAGCCACAAGGGGATT
TCACTTTATTCCCTAATGTATTAGAGTTACAAAACGTAGAAGGTGCAATT
ACACTTCCAATTCCACTGGGTGACTTTCAACTACTGGCTGGAGGGGAATG
GAAACTAGGGAGCTTGAGAATGAAGATGAAGTTCACAAGAGAACACGATG
ACACGTACAATATCAAAGGCTTCGCTGAGACAGAGCTGGTTTCTGTTCAC
ACAATAAGCGGCGCATTTGATATGGACCCTTTACCAAAGGATGCTATAAG
AGTCTTGCTACAACGGATTGGTGTTGAAGATATGAAGATAAGAGATTGTC
GTATGTATGGCACAAtacaaccaaagaaaaatatctaCGAGATTGCTTTC
TCTGGTGAAccagaaaaagaagaatatcaAGGCGGTCGATTACGGCTCTT
CATCACAAACTACCAATCAAATCGGAACTTGGCTATCCTTCTAGAACTTC
AAGATTACTCACCTGTAACACTACTAAAGACGTTATACGGACCTTCAATA
GGACGTGCTACGGTTTTAAAAGACCGGAACCAGACTATAGCGTTGTATAT
ATCGTCTCAACCGACGTCGCGCTTTTCGACGATTCTAACGGCACACGGTA
GCGGGCGCTGGATTCACCGAGATTCTAAATTTGATCCTGGTGCATACCTA
CTGGTAACCCTACCGTTCCCGAAACGAAAAGCTGTCGATATGAAAATCAA
ACTACTGACTGATTCGTTAGATTTTTCAATCCCTGAAAGTGAGAAATTAT
ACAGTGATTTAGCACTCAATGCTATTTTACCGGAGAAAATAATGCATTTG
GGAGTTGATAAAATTGCACTGGCGAAAGATAAGGATAATCAAATGTTTAC
TAAATTAAGGATATTGAgatttaaatatttcctttttaacGATACGTATT
TGGCAGCTGCTGAGTCGCATCTGTCGATGGAGGAAGAATTAGCAGAATAT
ATGCCTGCGGCTAAGACAGttatgaatataaatcaacatTTAGCGTATGA
GAATGTGAATTTACTGAACAATCAGACACCAATAGTTCGAAATAAGCATG
ACATTACTGGAGGGATTAAATCAATAAAAGAACATAAAGAGGAAAAAGAT
TCGGCGGCTTTGGAAGCTTTCTTTGCAAATGAGGTTGAAACACCAACTAA
AGCAAAAGCAAATGACACACTGACTTTAGCAGAATCTNTGAAACACCAAC
TAAAGCAAAAGTAAGTGACACACTGACTTTAGCAGAATCGACAGGACTAT
TGTAGCCATGATGgaaactgtttttattttagctcCTTACACTATTAGCT
TATTTTTTCATCTGATATATTGCATTATACACGATGTTCGAATACTTTGT
ATTTCGTAACTTCGTATTTTCAATAGTATGTTCGATTCAAAGGTTGTACG
TGGCCAATAAAGACCACATAAGTCACAGACTTGTATAAAAAGTCCTCCAA
GAAAGAACATCCTTACCACTGTAATGATGACACAATGCAGGGCCTCACGC
AACCGGAGGGGTTATTCATgattgcgcctccttagtcactatgatTTGGC
CCCCTTCATTTTTCAGATCACTACAGCTTGCACTCTGCAGTGTACTTAAA
CTTAACCTGTAGGCTAGCATGTCCGTGAATCAACAATCCGTTGCGTGAAT
TCACTTGTATCGtatatttctttaaattttatgttaatATTG Run BLAST on NCBI transcript from alignment at scaffold_154:618971..624224- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049298 ID=TCONS_00049298|Name=TCONS_00049298|organism=Clytia hemisphaerica|type=transcript|length=5254bp|location=Sequence derived from alignment at scaffold_154:618971..624224- (Clytia hemisphaerica)
TTCTGCATTAAGTTTATAAAACAGTGTTCGAATTTGAAAGGATGTTTAAC
CGTGTTTGAAAGCAACCATTAATATTTTTGGTTGCGAAAATATCCTGCAA
CATTTATTTTGTAGCTTCAGGCAGCTTTCAAAAATATACTGCAAAACTGT
ATTTTCTGGACTGTTGCTTTTATTTTGGTGAAGGTTCACATTACCATGAA
CTTGGAAGGTTTAATGTTTTACAAATATTAATTGCATCTGGAAAGAACAT
ACATAATTGTTGAATAAGTTTTTAAACATAATGGCTTTGATTTATTGATT
TAGGCTAGAAAGGTCAAACATATTGGTTGATTCAGATAAAATCTATGGTT
TTGCAATTGATTCTGGTACCCTACTGGTTACGTACTGGTAAACGAGGTTC
CAACGTTCGAAATTTCACGGATTCTTCTTACAATGACTTGGTTTAAAGCC
TTTGTTTAAACCTTGCCAAGTTTTAGTTCCAGGTCAAACAATATAATTCA
ACCTGGATGAAAATACAGAACAACCAAGAAACCGCCCTGGACGACGCCCT
GATGCGAGGGCGTTTAGCATCATTGACTCTTGTCATGTTGATCATGCTAG
TATCATTAGATTATATTTTGACAGCAAAGAACCATAAGCCAAGCAATCAC
AAGAAAAACAACAATAGTAAGAAGCCACCAAAACCTAATAAACTATCAAA
AGGAAAAACAAAACTGAAACAAGCGCTTAAGAAGACGGCACCAACACAGA
CCATAGTACCAAAATATCCACGACTGTCCGCATTCTTTGCGACCCGTCCG
GATATAAAACCACACAGCAAGTTAACGCAGTGTGACGTCATAACCAACAA
GGAACAATGTATATACAGGACTATACCAAGGAAAACACATTGTCTACTCT
TTCAGAATCTGATAAATGATTTAGCTCCATTTTATAGACGTTTTATTGCA
AGAAGTCGGTTATACAGCTTTGCAAAACATGAAGTAAAAAATGTGCAGAT
CAATACTTGTGCAAGGACGATGACACTGATTACAAAGCCACAAGGGGATT
TCACTTTATTCCCTAATGGTAAGTCTTATGTTCCCCAATTTACAACAAAA
CATAAAACTTAAACTTACTCTGTAGGACAATTAATGTTCAACCTTTTTGG
GATAGATATACAGGGTGTCCCTAATTAAAGTATCGAGTCGAAACACAACT
ATGAGTAGAAAGTTTTATGTGCGTGTTCACAAAATTGCATTTTAAGCTCT
CCCTCTTTTTTCTTTGTCATTACGATTAATTTATACGTTGTTTATTTATA
CCTTTTGTAATAAGCCTGTGTGATGGAGAACGTTCTTATATTTTAGCGAT
AACACACACAAACTTTTCTACTCAATCGCATGTTCAAACTCGATACTTTA
ATTAGGGACACCCTGTACAGTTGACAAATTAATTCGACGTTCTGCTATTC
GATACACTCCATTATCCGTTAATATTAAAAGTCACCGTCAACAAGAAACT
CTCATTAAAAACGCTCTACTATTCGATACACTCCCTTAATCGATGAAAAT
TGAATTCTCCTTGAAAATCGAATCAGAGAGCGTCAGCTGTATATCCACTT
TTTGCTACGTTAGAATTCATCTTAAATCTCTTTAATTTTTAGTATTAGAG
TTACAAAACGTAGAAGGTGCAATTACACTTCCAATTCCACTGGGTGACTT
TCAACTACTGGCTGGAGGGGAATGGAAACTAGGGAGCTTGAGAATGAAGA
TGAAGTTCACAAGAGAACACGATGACACGTACAATATCAAAGGCTTCGCT
GAGACAGGTACAAAATGATTCCTTTTTACACAATTTTTTTTTAACGTTCA
TCTAACGTTATAATTGATTGCCTCGGGCCAATTTAAATACACAGATCAAC
ACAACGAAAGTTTTTAAAACCTGTTGCAGTCTATTTCAAGCTGTCGCGAT
ATTTTTTGAGCAGTCGAGATATTTTTCAAACTTTTGCGATGTTTTTCAAG
CTGTCACATTTTCAAAAACTGTCGTGTCGCGATATTTTACAGACGGTCGC
GTTTCCAGATGTAGCGATATTTTTCAAGCTTTCGTATTTGTGACAGTGGC
CATCCTCGTCGGGCTTACTATTGATTTTGTTTACAATAAAAGTGGTGCAC
GTGAACCTGTATAAAATGGCGATTCCTACTGGCGCGATTCCCTCGATTTC
CCGAATTTTTTAGATTTTGAATTTTTTTGGAAGCACGACAGCTTGAAAAA
ATATCACGACAGCTTGAAAAAGATTGTGATAGTTTCAAAAAGATCGCCAC
AGGTTTTTAAAATTTCCGCGCACTGACCTCTAAGCCTCCAAAGTATTCAT
TGCTATGCTACCGTTGGTTGGTTGGTTGGTTCATTTATTCATTAATTCAT
TCACTTGTATATTCATTCATTCTAGAGCTGGTTTCTGTTCACACAATAAG
CGGCGCATTTGATATGGACCCTTTACCAAAGGATGCTATAAGAGTCTTGC
TACAACGGATTGGTGTTGAAGATATGAAGATAAGAGATTGTCGTATGTAT
GGCACAATACAACCAAAGAAAAATATCTACGAGATTGCTTTCTCTGGTGA
GTAAAGGGTCACTTAGACTACACAATATGTACATTGACGAACAATATTTG
ACAATATCGTTTTCGGACCATAATGTACGAAGTAAATAACAGGTACTCTA
TTATAAAAAGAAATTTTCTTTCTGTAAACAATCCCCATATATTGTTGGAA
AATTGCAAATCGAGCTGGCAATATATTGCGGACACCTTTTCAATATATTG
CCGACACTCAGCAATATTGCCTGACAATATATTGTGTAGTGTATGTAGCC
CTTAAAACCTTGTTAAAAGAAAGACCGGAAAACAAGCCATCCTATCTAGG
TCAAGGGGCTATTTTTCCAGTTTATTTCTTAAGTTCATTGAGAACTATTA
ATTGCCTGGCCTATTTCTCGACAGTAAGTTTAATAATAAAGCCTGCCTCA
AAAGTATATGTGGACACAATACACCTTTTTACAGTTAGCTGCTTCGTATA
AGAAGTCACCAAATTTTCGAGTAAACAAACCATCTCATTGGCCAAAAGTA
AAATCATAAACAAAACAATGTCCAGAGTAAGAGCACGGAAAGCACATTGT
TTTGTTTATGTTTTTGCTTTTAGCCAATGGGATGGTTTATTTACTCGAAA
TTCTGGTGACTTTTTATACGAAACGGTAAGGCTACGTCATATCTTCCTTC
GTTTCGAGCGTAAAACTCCTACTATTCGGGATAAGAGCACTGCTCTTGTT
TTGAATATTGAAATTCTCCGGATAAATCGCATGCGCACTGAGGTTTTAAA
AAATTATAGAGAGTTTTGAAACCTAAGCCAATCAGCTGTGTTTTAAACAT
TCTTTTATTTGAAACCTCTATTGATAAACATCTTTTGTGAAAATTGTTCA
TTATGTTTAAACCTATTAATAAGCGATTCTCGGTGCGGGTTACTAGTGGA
CGCCTATAGCAGTGCCTATAGACCAAGAGTAAGGCCTAAAAGCCTGGAGC
TGTCTATTGTGTAGACTAACGAAACGGCTATGTAACCGGAAAAAGGTATA
TTCTTTATCTTTTCCCCTCATTCCCAGCTCTGCCGACAGCCGCCAGTAGA
ATATACTTACTTTACTTACAGACAGTAAAAAATCTTTTTTCAATAGCGAT
TCAAACCTTTCTAATATCTCTAAAAAGGGTGGGGCGGAGTTAGATGAGGT
TTGTCGACATTAGAATAACTGTATAACATAACAGTAACACCCGAGCCTCT
CCGTAGCTAAAAAACATTTTCTTAAAGTTTTAGACCACCATGTTGATATA
CAGTACAACTAACTTGAAAATTCGGGGACAATTTTGATTATTCTTATTTC
CTTTATAAACCCATAGGTGAACCAGAAAAAGAAGAATATCAAGGCGGTCG
ATTACGGCTCTTCATCACAAACTACCAATCAAATCGGAACTTGGCTATCC
TTCTAGAACTTCAAGATTACTCACCTGTAACACTACTAAAGACGTTATAC
GGACCTTCAATAGGACGTGCTACGGTTTTAAAAGACCGGAACCAGACTAT
AGCGTTGTATATATCGTCTCAACCGACGTCGCGCTTTTCGACGATTCTAA
CGGCACACGGTAGCGGGCGCTGGATTCACCGAGATTCTAAATTTGATCCT
GGTGCATACCTACTGGTAACCCTACCGTTCCCGAAACGAAAAGCTGTCGA
TATGAAAATCAAACTACTGACTGATTCGTTAGATTTTTCAATCCCTGAAA
GTGAGAAATTATACAGTGATTTAGCACTCAATGCTATTTTACCGGAGAAA
ATAATGCATTTGGGAGTTGATAAAATTGCACTGGCGAAAGATAAGGATAA
TCAAATGTTTACTAAATTAAGGATATTGAGATTTAAATATTTCCTTTTTA
ACGATACGTATTTGGCAGCTGCTGAGTCGCATCTGTCGATGGAGGAAGAA
TTAGCAGAATATATGCCTGCGGCTAAGACAGTTATGAATATAAATCAACA
TTTAGCGTATGAGAATGTGAATTTACTGAACAATCAGACACCAATAGTTC
GAAATAAGCATGACATTACTGGAGGGATTAAATCAATAAAAGAACATAAA
GAGGAAAAAGATTCGGCGGCTTTGGAAGCTTTCTTTGCAAATGAGGTTGA
AACACCAACTAAAGCAAAAGCAAATGACACACTGACTTTAGCAGAATCTN
TGAAACACCAACTAAAGCAAAAGTAAGTGACACACTGACTTTAGCAGAAT
CGACAGGACTATTGTAGCCATGATGGAAACTGTTTTTATTTTAGCTCCTT
ACACTATTAGCTTATTTTTTCATCTGATATATTGCATTATACACGATGTT
CGAATACTTTGTATTTCGTAACTTCGTATTTTCAATAGTATGTTCGATTC
AAAGGTTGTACGTGGCCAATAAAGACCACATAAGTCACAGACTTGTATAA
AAAGTCCTCCAAGAAAGAACATCCTTACCACTGTAATGATGACACAATGC
AGGGCCTCACGCAACCGGAGGGGTTATTCATGATTGCGCCTCCTTAGTCA
CTATGATTTGGCCCCCTTCATTTTTCAGATCACTACAGCTTGCACTCTGC
AGTGTACTTAAACTTAACCTGTAGGCTAGCATGTCCGTGAATCAACAATC
CGTTGCGTGAATTCACTTGTATCGTATATTTCTTTAAATTTTATGTTAAT
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049298-exon-scaffold_154-1575043694:623157..624224 | TCONS_00049298-exon-scaffold_154-1575043694:623157..624224 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1575043694:622418..622582 | TCONS_00049298-exon-scaffold_154-1575043694:622418..622582 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1575043694:621629..621799 | TCONS_00049298-exon-scaffold_154-1575043694:621629..621799 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1575043694:618971..620308 | TCONS_00049298-exon-scaffold_154-1575043694:618971..620308 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1510915933:623157..624224 | TCONS_00049298-exon-scaffold_154-1510915933:623157..624224 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1510915933:622418..622582 | TCONS_00049298-exon-scaffold_154-1510915933:622418..622582 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1510915933:621629..621799 | TCONS_00049298-exon-scaffold_154-1510915933:621629..621799 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1510915933:618971..620308 | TCONS_00049298-exon-scaffold_154-1510915933:618971..620308 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1491911889:623157..624224 | TCONS_00049298-exon-scaffold_154-1491911889:623157..624224 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1491911889:622418..622582 | TCONS_00049298-exon-scaffold_154-1491911889:622418..622582 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1491911889:621629..621799 | TCONS_00049298-exon-scaffold_154-1491911889:621629..621799 | Clytia hemisphaerica | exon |
| TCONS_00049298-exon-scaffold_154-1491911889:618971..620308 | TCONS_00049298-exon-scaffold_154-1491911889:618971..620308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:618971..624224 - |
Blast
The following BLAST results are available for this feature:
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