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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049282 ID=TCONS_00049282|Name=TCONS_00049282|organism=Clytia hemisphaerica|type=transcript|length=2347bp CGCCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAACAACAA AGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATCTAACA ACAACATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCACTCT AACAACAACATGAACAACAAAGTCCGTCAATCTGACAATAACATGAACAA CAACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGA ACAACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAA TCTAACAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAA CAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCAAT CTAACAATAACATGAACAACAACGACCGTCAATCTAGCAATAACGACCGT CAATCTAACAATAACAACCGTCAATCTAACAACAACATGATCAATAACAA CCGTCAATCTAACAACAACATGAACAACAACGACCGTCAATCTAACAACA ACGACCGTCAATCTAACAACAACGACCGTCActctaacaacaacaacaac aacgatcAAATATCGCATAATAGCAATGTAAACGCTCGTGAATCTAAAAC CGAAGTTGCAAGCTTAAGAGACCGATCTGAAACCACTAACAAAGATAGAC AACGAAACAACTACAACTACAAAAACTTCAACAACAGACGATTTAACAAT CTCAAAAAATACAACCATCAAAACAAACTAGAGTGTGACCACGATCATAT GCGATTCACCTTTAAACCATCATTTGGTCGGGATATCGAGATTGAAAGAG TGACATTGAGCAGTGATTCATGTAGGATGAGATACGATCGTATGAGAGAT GAATACATGACTGTGACAAGCTATGAAGAATGTGGCACGGGAATGGAAGA GGAGGAGGAGAACAtcgtttttatgAACGTTGCACGCGTCATCTACCGCA ACACTACCATTAAAAACGCCTTGATTGAACGTAAGAACATCTACAATATC GGATTAGAATGTCGATTGAAGAAAACTGCAGTCAACACGATCAAGGGAAA CAGAGAAGATGATTCAGGAATGATCGTCAGTCCACAATCCTACGAAATCA ATGATTATGCTAGAAGTACTGGAAACTTCAGAATTGATTTCCAAGTTTAC AAATCAAACCAATACAACCACTCATACGGTGTTGAGGAATTCCCAATCTA CTTGGGAATCAGTAACCGCATCTACTTTGAACTCTCCATGGATCAACCAG ACTTGACACTCATTCCACATGAATGTTACGCCACTGCTGACCGAAGTTAC CTATCCAGACCGCGATATCACATCATTGAAGAAAGATGTCCAAAAGACGA GACGTACGTCGAACACATGCAAGATGAGAATACCTACCGATTCAGTATCC AAGCTTTCACATTCAAGGACGGACAAGACAGTATTTATGTTCACTGTAAA NAATACCTACCGATTCAGTATCCAAGCTTTCACATTCAAGGACGGACAAG ACAGCATTTATGTTCACTGTAAATCATACGTCTGCCAAAACACAAGCAAC GAGCTGTGCAACTTTGGATGCAACAAAAATGGAAACAGCAACGACCGTTT CCAAAACAACAACATGAACAGCAACGACCGTTTCCAAAACAACAACATGA ACCGCAACGACCCTAACAACTTCCTTTTAAGGAGATCAAGAAGAAGCGTA GAAGCAAATACAATTGGACAAATTCATGGTTTCATGACATCCACATTAGA AATCAAAGTCACAACCACCGATAAGAAAGTCGCAGCCAGAATCGAAGTTA CCGAGACATCCGAAGATAAATCCATCCTGAGCTATTTGCCATACCTCCAA ATCCCATTGGTTTTACTAGTTGTCGGTGCCGTAGTAATGGCATGGAGATG TATCAAACGAAATAGAGCCGCATCTAAAGAAGTGAATTGAGAGAAAAAAC TATTTGTTTACGATGTAAACTAAACTTTAACACAGGAGGATCTTGTTTAA TGAAAATCGATCCTTATTGAAGATGGTCCAAGTCCAGCTAAATTGAAGGC ATCTATAATGGTCTAATTTTAGCCAATCGTTTTCAGAAATTTAACCGACT TAGATGAATAAAATTTATAGTATTTTACAAAAGTTTACCAGTTTGTTAAA ATTAGATAGTTTTTGTGTTTCTTTGAAATGTATTAAAGTGCCCATATTTA TTTAGAAATATCTAGAAAcatatattttgttttgaatgaaatattatgaa aaaattAATCTATACCTTTAGAGATTTTTCTCAAACTTTTTTGTTGA Run BLAST on NCBI transcript from alignment at scaffold_154:521349..527520- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049282 ID=TCONS_00049282|Name=TCONS_00049282|organism=Clytia hemisphaerica|type=transcript|length=6172bp|location=Sequence derived from alignment at scaffold_154:521349..527520- (Clytia hemisphaerica) CGCCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAACAACAA
AGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATCTAACA
ACAACATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCACTCT
AACAACAACATGAACAACAAAGTCCGTCAATCTGACAATAACATGAACAA
CAACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGA
ACAACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAA
TCTAACAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAA
CAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCAAT
CTAACAATAACATGAACAACAACGACCGTCAATCTAGCAATAACATGAAC
AACAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACAT
GAACAACATCGACCGTCAATTTGACAATAACGACCGTCAATCTAACAACA
ACATGAACAACAACGACCGTCAATCTAACAACAACATAAACAACAAAGTC
CGTCAATCTAACAACAACGTGAACAACAACGACCGTCACTCTAGCAACAA
CATGAACAACAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACA
ACAACATGAACAACAACGACCGTCAATCTATCAATAACGACCGTCACTCT
AACAATAACATGAACAACAACGACCGTCACTCTAGCAACAACATGAACAA
AAACGACCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACATGA
ACAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAA
TCTAACAACCACATGAACAACAACGACCGTCAATCTAACAACAACATGAA
CAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGACCGACAAT
CTAACAACCACATGAACAACAACGACCGTCAATCCAACAATAACAACCGT
CAATCTAACAACAACATGAACAAAAACGACCGTCAATCCAACAATAACGA
CCGTCAATCTAACAACAACATGAACAACAACAATCGTCACTCTAGCAACA
ACATGAACAACAACGACCGTCACTCTAGCAACAATATGAACAACAACGAC
CGTCAATCTAACAATAACATGAACAACAACGACCGTCAATCCAACAATAA
CAACCGTCAATCTAACAACAACATGAACAACAACGACCGTCACTCTAGCA
ACAACATGAACAACAACGACCGACAATCTAACAACCACATGAACAACAAC
GACCGTCAATCTAACAATAACATGAACAACAACGACCGTCAATCTAACAA
TAACAACCGTCAATCTAACAACAACATGATCAATAACAACCGTCAATCTA
ACAACAACATGAACAACAACGACCGTCAATCTAACAACAACGACCGTCAA
TCTAACAACAACGACCGTCACTCTAACAACAACAACAACAACGATCAAAT
ATCGCATAATAGCAATGTAAACGCTCGTGAATCTAAAACCGAAGTTGCAA
GCTTAAGAGACCGATCTGAAACCACTAACAAAGATAGACAACGAAACAAC
TACAACTACAAAAACTTCAACAACAGACGATTTAACAATCTCAAAAAATA
CAACCATCAAAACAAACTAGAGTGTGACCACGATCATATGCGATTCACCT
TTAAACCATCATTTGGTCGGGATATCGAGATTGAAAGAGTGACATTGAGC
AGTGATTCATGTAGGATGAGATACGATCGTATGAGAGATGAATACATGAC
TGTGACAAGCTATGAAGAATGTGGCACGGGAATGGAAGAGGAGGAGGAGA
ACATCGTTTTTATGGTAAGTTTTATAGAAATTACATTTGATTTTCATAGA
TATTTTTTATGATATAGAAAGAAAGGGCAGTTCTGTGTTGACAAAGCAGA
ACTTTCAACGGCACTAAAAACTAGATCTAGTGCTCGATGCATTGCACCAG
TTACCATTAGGGTATCACTTTCAAAAAAACTCCGATCAAAGATTTTGCTT
GGCTAAGATTGAGAAGCTGCTTCCAGGGTTTAAATACAGCTCAGTGACTG
CAATATTCCTTCATTCTAGAATGTTGCAGGACGTGTAGGACGTAGGGTCT
ACGCCAATTTGCTTAGTTTCATTTAATTGTAGCCTCAGGATGCGGTGCAA
TGAGAAAAAATCTTCCATGTAAATTCATTAACTGTCTCCTAAAAAGCCGA
CCACGCCGCTATGGGTTGGTAGGTGTATTTGAACTATATATGCGTGTAAA
GGACTATTCCTTCATTCTAGAACGTTGCACGCGTCATCTACCGCAACACT
ACCATTAAAAACGCCTTGATTGAACGTAAGAACATCTACAATATCGGATT
AGAATGTCGATTGAAGAAAACTGCAGTCAACACGATCAAGGGAAACAGAG
AAGATGATTCAGGAATGATCGTCAGTCCACAATCCTACGAAATCAATGAT
TATGCTAGTAAGTGGTATTTGTGACTCTATCTCTATATGTCACGACAAAA
TCTATTAGGGGGGGTGTTAAAATGTCAGACATGACGTTTAGTGTCGTGGT
GGTACGCCCAAAAAGAACGAATCCAAGAACGAGGTTCAATGAAATGCTTC
TAATACTACCCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTT
CACAACATCCATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCA
GCTGGGTAGTCAAATGACTATAGTCTTACGGCTTGGGGACACGAAAAGTC
TTTTTCGCGTTGGTGCAATGCAACATGCTCTATCCCACTAACACAAGAAA
ATGCGTGTCCCATGGTTTCTTTTTTTGTTTCATGGGACAAAAAGTGAGGG
AAATACCCAAAAGACACAGAGATTTTGTCCCAGAGACAAAAGTGAGATAT
CACTTTTATTGGTAGAAAGAAAAATGGGTAGATACACGAGAAAGCTTTTC
AGGTTGGTGACATGGAGCATGTCGCATTGCACCAACGTGAAAAAAACTTC
TCGTGTCTCCCCAAGCCTTTACGTCAAATTTTGGATTTTTTTTATCATTT
TGTCATTTTGTCATCTACAGCAGATCAAAGGCTTTAATTCCCGATTTCTA
TTTTCAGGAAGTACTGGAAACTTCAGAATTGATTTCCAAGTTTACAAATC
AAACCAATACAACCACTCATACGGTGTTGAGGAATTCCCAATCTACTTGG
GAATCAGTAACCGCATCTACTTTGAACTCTCCATGGATCAACCAGACTTG
ACACTCATTCCACATGAATGTTACGCCACTGCTGACCGAAGTTACCTATC
CAGACCGCGATATCACATCATTGAAGAAAGGTGAGAAATTGTGATTTTGC
TAAATTACTCTTTTTATAAGAACAAACTATATAAGAACATAAAAGCTTCG
ATGGCCAAAATATTAAGGACATGTTATGCACATTTCAAGGCTTTGTGGAC
TCTGAAACACCCGATTTCTTAGGAAAATGGACAAGATTAACCCCAAAATG
GTGAAAATAAAAATATTTTAGGCTTAAAACTCAAAAAGTAAAGAACATCC
GAAAGCTTCGAAAATGTGGGGTTTTCTTATATAAAAGAACGTTTATGAAC
AGGCACGACACATAGAATAACAACAGGTACATCTGAAGTACCAGAATTAT
TGCGATCAAGCCATGATACTTTTGTTTTTCTTGCACCTATACTTATAACG
AAATTTTGACTTTCAAATTGGTATCACGGCTTTATCATCGAAGAAGGGGC
AGCGTTAAAATTACAACCAAAAACTTGCACACACCGTTGTTTCAACGTTC
ATCTTATGTTATATGGACGTTGTGAACATTAGATAAACGTTGAAATAACG
TTGTGTGCAGCTGGGAAACTGTTGACCATACATATAATTTCTGTTAGATG
GCGGGTGGGTAAGAAAAACTTATAAACACAGCAGATTCTATACAATTTGA
CCTCATTTTCGTTCCCCTTAAAATACACTCGTAAAGATAATTCCCTAATC
CCAACATCTTTATAGAATTCGAAAGAATTAAATTTTCTGCTTATGGTTAA
GATTAGCGAAACAGTGACCTTTCTGGTCTTANCATCTTCAGAATTCGGAA
GAATTAAATTTTCTGCTTAGGGTTAAGATTAGCGAAACAGTGACCTTTCT
AGTCTAAAATCTTTAGATGTCCAAAAGACGAGACGTACGTCGAACACATG
CAAGATGAGAATACCTACCGATTCAGTATCCAAGCTTTCACATTCAAGGA
CGGACAAGACAGTATTTATGTTCACTGTAAANAATACCTACCGATTCAGT
ATCCAAGCTTTCACATTCAAGGACGGACAAGACAGCATTTATGTTCACTG
TAAATCATACGTCTGCCAAAACACAAGCAACGAGCTGTGCAACTTTGGAT
GCAACAAAAATGGAAACAGCAACGACCGTTTCCAAAACAACAACATGAAC
AGCAACGACCGTTTCCAAAACAACAACATGAACAGCAACGACCGTTTCCA
AAACAATAATATGAACCGCAACGACCGTTTCCAAAACAATAACATGAACA
GCAACGACCGTTTCCAAAACAATAACATGAACAGCAACGACCGTTTCCAA
AATAACAACAGGAACAGCAACGACCGTTTCCAAAATAACAACAGAAACAG
CAACGACCGTTTCCAAAACAACAACATGAACCGCAACGACCCTAACAACT
TCCTTTTAAGGAGATCAAGAAGAAGCGTAGAAGCAAATACAATTGGACAA
ATTCATGGTTTCATGACATCCACATTAGAAATCAAAGTCACAACCACCGG
TAAAAATCTTATTCTTTTAACTAAACATTAGGGTTTTGTGTGTGAACGGA
AATTAGCCAGGAAGCCATTCGGAATATCAGATAACAGAGCAGAACGAACC
AAATAGCTTTGCACATGATGTCACTGATAAGAAGGCACACGACTTTTAAC
CCAAAAAGTTACCAAAAAATAATTTTATCCAAGCAATACCGATTTCTTAT
TCTTTTTTGTTATCTTGAATCACCGACCATGGGAAATGCGAATTGTCAGG
AGGATTTGAGCAAAATCTTATTCAATACTCTCGGGTACCTAATAGCCGGG
GGGTTGGAATAAGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAATAAAAAT
GTCCTGGGTGGAAAATTTTTGAAAAGGAGGCTAATACAGCTGAATTAGGA
CAAAAAAGGGAACTTTCAAAAACATTTTTCCAAAAATTAATAAGCGGGGG
AGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCCAGTTCTGTGAGCCT
TACAAAAAATTAACCCAAAAATTAAAAAGAAGCATCTTACAAGCATTTCA
ATTGGATGATCCACATTTTCAACTTTTATATTCCTTCATTTTTAGATAAG
AAAGTCGCAGCCAGAATCGAAGTTACCGAGACATCCGAAGATAAATCCAT
CCTGAGCTATTTGCCATACCTCCAAATCCCATTGGTTTTACTAGTTGTCG
GTGCCGTAGTAATGGCATGGAGATGTATCAAACGAAATAGAGCCGCATCT
AAAGAAGTGAATTGAGAGAAAAAACTATTTGTTTACGATGTAAACTAAAC
TTTAACACAGGAGGATCTTGTTTAATGAAAATCGATCCTTATTGAAGATG
GTCCAAGTCCAGCTAAATTGAAGGCATCTATAATGGTCTAATTTTAGCCA
ATCGTTTTCAGAAATTTAACCGACTTAGATGAATAAAATTTATAGTATTT
TACAAAAGTTTACCAGTTTGTTAAAATTAGATAGTTTTTGTGTTTCTTTG
AAATGTATTAAAGTGCCCATATTTATTTAGAAATATCTAGAAACATATAT
TTTGTTTTGAATGAAATATTATGAAAAAATTAATCTATACCTTTAGAGAT
TTTTCTCAAACTTTTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049282-exon-scaffold_154-1575043694:527077..527520 | TCONS_00049282-exon-scaffold_154-1575043694:527077..527520 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:525607..526137 | TCONS_00049282-exon-scaffold_154-1575043694:525607..526137 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:524964..525150 | TCONS_00049282-exon-scaffold_154-1575043694:524964..525150 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:524091..524313 | TCONS_00049282-exon-scaffold_154-1575043694:524091..524313 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:522944..523254 | TCONS_00049282-exon-scaffold_154-1575043694:522944..523254 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:522622..522745 | TCONS_00049282-exon-scaffold_154-1575043694:522622..522745 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1575043694:521349..521875 | TCONS_00049282-exon-scaffold_154-1575043694:521349..521875 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:527077..527520 | TCONS_00049282-exon-scaffold_154-1510915933:527077..527520 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:525607..526137 | TCONS_00049282-exon-scaffold_154-1510915933:525607..526137 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:524964..525150 | TCONS_00049282-exon-scaffold_154-1510915933:524964..525150 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:524091..524313 | TCONS_00049282-exon-scaffold_154-1510915933:524091..524313 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:522944..523254 | TCONS_00049282-exon-scaffold_154-1510915933:522944..523254 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:522622..522745 | TCONS_00049282-exon-scaffold_154-1510915933:522622..522745 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1510915933:521349..521875 | TCONS_00049282-exon-scaffold_154-1510915933:521349..521875 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:527077..527520 | TCONS_00049282-exon-scaffold_154-1491911889:527077..527520 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:525607..526137 | TCONS_00049282-exon-scaffold_154-1491911889:525607..526137 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:524964..525150 | TCONS_00049282-exon-scaffold_154-1491911889:524964..525150 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:524091..524313 | TCONS_00049282-exon-scaffold_154-1491911889:524091..524313 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:522944..523254 | TCONS_00049282-exon-scaffold_154-1491911889:522944..523254 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:522622..522745 | TCONS_00049282-exon-scaffold_154-1491911889:522622..522745 | Clytia hemisphaerica | exon |
TCONS_00049282-exon-scaffold_154-1491911889:521349..521875 | TCONS_00049282-exon-scaffold_154-1491911889:521349..521875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_154 | supercontig | scaffold_154:521349..527520 - |
Blast
The following BLAST results are available for this feature:
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