TCONS_00049276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049276
Unique NameTCONS_00049276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049276 ID=TCONS_00049276|Name=TCONS_00049276|organism=Clytia hemisphaerica|type=transcript|length=2253bp
AGAAGAAAAGAATTGAATTGCCCACGTCATCTCTTAGGGAGTTTGATTCA
GAACTTTCATCAATTCCATCAGATCTCAAAGAAAACAAGAATGTTAAGAA
ATCACAACGTATCCAATCATCAAAGCAtcgttatttcaaaaataatttca
agcgTGTATCAACTTTCACCAGAGAGTTTGTTAATGACAGCGCAATGGCA
ACACAAGAAATGTTCAAACATGTTTCAAAAGGTATCCCAGACACACCCAA
ATATTTCACCACGGGAAATGCTGGTATTGCGTTGGCTCTTCTCTCTATTC
TTCTACACATGATAAACATGTATACAGATGTGGCTGTTGCATTTTattat
ttcaagaaaaatgattATTATTTTGGAAGCTTGACTTTAATTATCGTCAT
AGTACCCTCACTAATCATCAGTGTATATACATTTGCTATCCACAAGAAAA
CTAATGGAATTTTCTTAAGAGATACACCCGTCTCCAAACCAATGGTTTAT
GGCTTATGTTTAATATTACATGGTCACGTAGCTCGATGTTTGATGTGGCT
GACAGTGTTGTATAAGAAGATTTCTTTGATCGGTGTAAGCGACGGATTGT
GGTTATTTCGAGATATTACCAGTTATGCTGAGACTTTCACCTATGCATTG
CCACAACTGTTTCTTCAAACATACATCGTGGTTCTATATTACGGTGAATT
CGAACTCATCCAAGCTATTTGTATTGCATCTTCTTGGTTATCTGCAGCGT
GGGGTATACAATCTCAATTCAAAGGTGCCAAATGGAAATTATTGACCTTT
GAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCTGCTATCGCATTACT
TGCCAGTATTGATAAATCAGCACCATTCATCATGCTACTTGGTCATTTCA
TTCTTGTTTGTCCTCTTTGGTTTTGGCAGAACAACATTAAACCATTCCGT
ATTAAAGCAAAGACCAGCCGACTTCAATTATTCATCACCGATGCTTTTTA
CGCCAGCATCTATGGAGCAAGTAATACAGTAACGCCGACTGTCTGTCGCA
ACCAGTTTTGGTTATCAATACTGCTCTTTACCGAGAATATTATATGTATC
ATTGCAGGTAGATGTTATGGTAAAGTTGACAGAACTATCGGACATTTTAA
ACGAAATTGTGATTACTATTCGGACGCTTTAAATAGTAAGAATCTGGAAC
AATCATTTTTCAATGATACAAAGTATTGCCAACATATGCCACAATTTGAT
GATCAGATTCATTGCGCAGTTGATTTTAACCAGTGGATTCAATCGAAAAT
TACTTTCTGGTTATCTATTGGTGTTGCCGTCTTTGCTTTTATCCAACTCC
TTATTGTTGTGATTCTCAGAAGGTATAAGTACATTTCTGCAGAAGCAATG
GTATCGAAACTGGGTACTCCTACACGATTGTCATCAGCTAATGGACGAAT
CAATGATTCTTTATCCAAGACAACTGCACCAGTATCCTCATCATCAACCC
GAAACCGTGGTTCTATTCCGTCTTCACCACCAGGAAATGGAGGGAATCTC
TCTGGAAACCCAATCACCAAATTACGTGGTTCAATTCCATTTCTACCAGA
AAACTGTGGTAGTCTCGATGAAAATAATCCCATCCACTTAGTCTAGTTAT
TCTTTGCTTAGGAAATGTCtctctgaaaatattttattgccAGATCGTGA
AAACATTAGAAAATAAGTACTGAACTGTGTAGTCAAACTGATCGACACTG
TTTAAAAATGTGACTGTTAGCCGTCAGAATAATCAGACATGAAACCCTCA
AACTTTCTCTTAAGACAGcttctttaaattttgaaggggcTCCCAAGGTA
ATTTGGCAGAAAATCTTTTGGGAGATTCTGTGAAAGGGGGATTGTTGTTA
TGTGGTAGTAATTTTGACATCGTATAACCTTTTGACTGCAAGTAAATCAA
ATTGGTAATCCAAGAGCTAACGGAATCTATACCGTTTGGTATCTTTACAC
CCTTTAGGCAAACCTTTTACATATAACTTTTTGTGAAATTGGGAAATTTT
AAGCGGGCAGCGTGCCAGCATAGTGTTTGTACAGTTTAAAGCGCAATGTA
AATATTGTTTCGTCagatttttataagatactgtAATTTGATAATTTGTA
AATATTGAGATTAAACTAATATAGTTTTTAGACATTTCGTTTTGACTAAA
TGGATTTTAATGTGTGTAAATTGACAAGTGAAATTAGTGAAATTTATCTG
GTA
Run BLAST on NCBI

transcript from alignment at scaffold_154:467745..471248-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049276 ID=TCONS_00049276|Name=TCONS_00049276|organism=Clytia hemisphaerica|type=transcript|length=3504bp|location=Sequence derived from alignment at scaffold_154:467745..471248- (Clytia hemisphaerica)
AGAAGAAAAGAATTGAATTGCCCACGTCATCTCTTAGGGAGTTTGATTCA
GAACTTTCATCAATTCCATCAGATCTCAAAGAAAACAAGAATGTTAAGAA
ATCACAACGTATCCAATCATCAAAGCATCGTTATTTCAAAAATAATTTCA
AGCGTGTATCAACTTTCACCAGAGGTAAACAACAAGTAAGTACATGACGT
TGTTTCAACGTTCATTTAACGTCACGGGACGTTATGAACCGTTAAAGAAA
CGTCGTGTACTAGAGTAATTTCGTTTTCTCTTATTTTCGAACTTTTTTTT
CCCGATTGAATCCAATTTCATACCAAAACTCTTTTTCATTTCCCTATTTT
TCGTAAAAAATGTATTTCGTGGTACTAATTCTCTCAGTTGACACACAAAA
ACCTCGAAAATATTGTTTGCGTGAAAATTCCTTACCGTTAAAATTAGATT
CATTAAGGAAAATGATTTAATCTACTTGATCCGTTGCCTATAATAGAATT
GAGAAGTATCTACAGCGTGTCCCAAAAAAAGCAGAATAATTTCTATATAA
GTAAAAATCTTATATTCTCGAAACTTATTATCTAAACTGGGCTTAATTGA
AAAATATTAAAATTTTCTGTTCAATCAGGTATGTATTCAGATATACTATA
TTCAATTCCCAAGATGATTTAATAAGTTTTTGGGATTGAAATATTAAGGA
TACAAGTTATAAAATTTGGCATAAATAATGAGGATTTTACTCCATGTGAA
GGTTTTTCCGCTTTTTTTAGGACATACTGTAAGTACATCTCATATTCTTT
ATTAACAGAGTTTGTTAATGACAGCGCAATGGCAACACAAGAAATGTTCA
AACATGTTTCAAAAGGTATCCCAGACACACCCAAATATTTCACCACGGGA
AATGCTGGTATTGCGTTGGCTCTTCTCTCTATTCTTCTACACATGATAAA
CATGTATACAGATGTGGCTGTTGCATTTTATTATTTCAAGAAAAATGATT
ATTATTTTGGAAGCTTGACTTTAATTATCGTCATAGTAAGNTGGTTGTAA
GTGACGTAAAATCAGTCAATACGTCATTTGCAACCAATCAGCTGTTGGGT
CCGTGGAAGACATTGCAATGGTGCATATCATGAATAGATTTCCATCTAAA
AATTATTTGTTTCTAATTTTCTTTAGGTACCCTCACTAATCATCAGTGTA
TATACATTTGCTATCCACAAGAAAACTAATGGAATTTTCTTAAGAGATAC
ACCCGTCTCCAAACCAATGGTTTATGGCTTATGTTTAATATTACATGGTC
ACGTAGCTCGATGTTTGATGTGGCTGACAGTGTTGTATAAGAAGATTTCT
TTGATCGGTGTAAGCGACGGATTGTGGTTATTTCGAGATATTACCAGTTA
TGCTGAGACTTTCACCTATGCATTGCCACAACTGTTTCTTCAAACGTAAG
TTTATGTAATTTACGACTGCAGTTTTGGGCGACTCGATGCCCTTTCTTGT
TTAGCCATATATCTTTCTCGTTTTCTATTGGTCCTTGGCTTAAGAGCGGC
AGTACTTAAGCTGTCAAAAGTTTGGTCGTTATTTCAAGGCATGCACTTCT
ATTGTTATCGTTGTTAAGATGTGTACCTTCAGGTAAAAGGTATAATTTAT
TTTTTGCTGAATTTGAATACACCAAGTCTCATACCTTCAAGTCTTTTTTA
TTGCCAAGAAAAACTAAGTCAAGTCTAGTTTGGAGTCAAATTTTAACCTT
CTCTTCTCTTTTGTCAGNTCAAGTCTTTTTGTAGTTTGGAGTCAAATTTT
AACCTCCTCTTCTCTTTTGTCAGAAAATATTTAATTTTTTAGTCTAACCA
TTGTGGTAAGCTCACCAACTACCCAACTACTATTATGTATTCTTAAAAAG
TATGCAATTTGATTTTTCTAGATACATCGTGGTTCTATATTACGGTGAAT
TCGAACTCATCCAAGCTATTTGTATTGCATCTTCTTGGTTATCTGCAGCG
TGGGGTATACAATCTCAATTCAAAGGTGCCAAATGGAAATTATTGACCTT
TGAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCTGCTATCGCATTAC
TTGCCAGTATTGATAAATCAGCACCATTCATCATGCTACTTGGTCATTTC
ATTCTTGTTTGTCCTCTTTGGTTTTGGCAGAACAACATTAAACCATTCCG
TATTAAAGCAAAGACCAGCCGACTTCAATTATTCATCACCGATGCTTTTT
ACGCCAGCATCTATGGAGCAAGTAATACAGTAACGCCGACTGTCTGTCGC
AACCAGTTTTGGTTATCAATACTGCTCTTTACCGAGAATATTATATGTAT
CATTGCAGGTAGATGTTATGGTAAAGTTGACAGAACTATCGGACATTTTA
AACGAAATTGTGATTACTATTCGGACGCTTTAAATAGTAAGAATCTGGAA
CAATCATTTTTCAATGATACAAAGTATTGCCAACATATGCCACAATTTGA
TGATCAGATTCATTGCGCAGTTGATTTTAACCAGTGGATTCAATCGAAAA
TTACTTTCTGGTTATCTATTGGTGTTGCCGTCTTTGCTTTTATCCAACTC
CTTATTGTTGTGATTCTCAGAAGGTATAAGTACATTTCTGCAGAAGCAAT
GGTATCGAAACTGGGTACTCCTACACGATTGTCATCAGCTAATGGACGAA
TCAATGATTCTTTATCCAAGACAACTGCACCAGTATCCTCATCATCAACC
CGAAACCGTGGTTCTATTCCGTCTTCACCACCAGGAAATGGAGGGAATCT
CTCTGGAAACCCAATCACCAAATTACGTGGTTCAATTCCATTTCTACCAG
AAAACTGTGGTAGTCTCGATGAAAATAATCCCATCCACTTAGTCTAGTTA
TTCTTTGCTTAGGAAATGTCTCTCTGAAAATATTTTATTGCCAGATCGTG
AAAACATTAGAAAATAAGTACTGAACTGTGTAGTCAAACTGATCGACACT
GTTTAAAAATGTGACTGTTAGCCGTCAGAATAATCAGACATGAAACCCTC
AAACTTTCTCTTAAGACAGCTTCTTTAAATTTTGAAGGGGCTCCCAAGGT
AATTTGGCAGAAAATCTTTTGGGAGATTCTGTGAAAGGGGGATTGTTGTT
ATGTGGTAGTAATTTTGACATCGTATAACCTTTTGACTGCAAGTAAATCA
AATTGGTAATCCAAGAGCTAACGGAATCTATACCGTTTGGTATCTTTACA
CCCTTTAGGCAAACCTTTTACATATAACTTTTTGTGAAATTGGGAAATTT
TAAGCGGGCAGCGTGCCAGCATAGTGTTTGTACAGTTTAAAGCGCAATGT
AAATATTGTTTCGTCAGATTTTTATAAGATACTGTAATTTGATAATTTGT
AAATATTGAGATTAAACTAATATAGTTTTTAGACATTTCGTTTTGACTAA
ATGGATTTTAATGTGTGTAAATTGACAAGTGAAATTAGTGAAATTTATCT
GGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031277XLOC_031277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049276-exon-scaffold_154-1575043694:471075..471248TCONS_00049276-exon-scaffold_154-1575043694:471075..471248Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1575043694:470214..470440TCONS_00049276-exon-scaffold_154-1575043694:470214..470440Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1575043694:469804..470072TCONS_00049276-exon-scaffold_154-1575043694:469804..470072Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1575043694:467745..469327TCONS_00049276-exon-scaffold_154-1575043694:467745..469327Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1510915933:471075..471248TCONS_00049276-exon-scaffold_154-1510915933:471075..471248Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1510915933:470214..470440TCONS_00049276-exon-scaffold_154-1510915933:470214..470440Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1510915933:469804..470072TCONS_00049276-exon-scaffold_154-1510915933:469804..470072Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1510915933:467745..469327TCONS_00049276-exon-scaffold_154-1510915933:467745..469327Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1491911889:471075..471248TCONS_00049276-exon-scaffold_154-1491911889:471075..471248Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1491911889:470214..470440TCONS_00049276-exon-scaffold_154-1491911889:470214..470440Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1491911889:469804..470072TCONS_00049276-exon-scaffold_154-1491911889:469804..470072Clytia hemisphaericaexon
TCONS_00049276-exon-scaffold_154-1491911889:467745..469327TCONS_00049276-exon-scaffold_154-1491911889:467745..469327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:467745..471248 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.46636	1.74147	0.828017	0.637378	0.121146	0.0551986	0	0.14252	0.049736	0	0	0.0585284	0	0.0330399	0	0	0.27601	0	0.560638	0	0.326984	0.0296927	0	1.93474	0	0	0	0.0696572	0.810581	0.162561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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