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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049275 ID=TCONS_00049275|Name=TCONS_00049275|organism=Clytia hemisphaerica|type=transcript|length=2201bp
tttagctgACCTCCTTCTTCATCAGTTTGTACACTTTTATTCTACACAAC
AAATCAAACGGAAAATTCCTCATGAAAATTCACTTCTCAAAACCCTTGGT
ATACAGTTTATGCCTAATATTACATGGACACGTAGCTCGATGTCTGATGT
GGTTGACTGTACTCGTCGAAAGAATCCCTTTACTGGGCGTACGTAAGGCG
TTATGGGCGTTTCGAGATATTACAAGTTATGCCGAGACTTTCACACACGC
ACTTCCACAATTATTCCTTCAGATGTATATAATCGTGCTTTATAATGGTG
ATTTTAATGCAATCCAATTAATTTGTTTTGTGTCGTCATGGTTATCGGCA
GCCTGGGGTATACAGTCTCAATTTGACGGTATAAAATGGAAATTATTGAC
GTTCGAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCGGCGACCACGA
TGTTAGCAAGTATCCATAAATCAGCACCATTCATCATGATCCTCGGTCAT
TTTCTCTTAATGTTTCCGTTATggttctggcaaaacaactttaAGCCATT
CCGTAAAAAACGAGGCAGTAACCGATTTGAATTAATCATCACCGATGCAT
TTTACGCTGGTATTTACGCCGGTAGTAACACGGCTACTCCAACGACATGC
AAATATCAATTCTGGTTAGCTGTTGTATTGTTTTTTGAGAATATTCTATG
TGTCATTCTTGGAATGCGATTCGGGACAGTTCAACGTCCTCTGGAGCATT
TCATTAACAATCAAATGGAATATAAACATCATAGATTGAACTATGGCGAT
TTGCTCAATAGAACAGCAGGTTATTGTGTTGATACTCCTCACTGGAAGTA
TAAAGTTCACTGTACAGTACCGTATAATACTTGGATTAAATCAAGAATCA
CATCTTGGCTAGCCGTCGGTGTCACCGTATTTGCTTTCATTCAGCTCGTG
ATTATTGTGATTCTACGGCAACGAAAAATCATCGCCGAAGACGCCATGGT
CTCCAAGCTTGGTGCTGCAAAACAGCTAAGTAAAGCTGAAGGTAGGGTTA
CAGCTACTTGTTCAGAAGCTACCGAATACAATACCCGAATGACACCGGAG
CCCTCGCCGTACATGAACAGAGCATCACCCTGCGTTGACAAAGAATTTCA
TCAACCATCACTTCTGGCAATCTCCACTGACCAGTCTTCTTTGTCAAGAG
CGAAGAATCAAACATTAGATTCACCAAAACCGTTTGTTCACCCCCGTCTC
AGTGATAAACATTCATCATCTACAAACAATATATTCAGTCAAAATAATAC
TAGGAATCGGAGCGAGCCGGGGGCTTCGTCGCCCAGTCTTTCAGTCACTG
TTAAGGATATCAACATTGAAAGTGTATCAGTGACGCAAACACCATCATGT
AGCCAAGCTGATATAAGACTTCATATGGATATTACTGTAAGCCGTAAGAA
TAGTCagaactaaagtctattcacgataagtgtgcactcttttttctttt
acttataacttttgaaggaattcttcaatctttttaaatttggtatcatt
ggaaagatatttgtgagtggaacaatttgaaataaaaaaaaccttaaaaa
gatcataaaaatgaagatgaaaatgaagaagaaaaaaatgaagatcttgt
agaaaagtgctatgactttcattttcactggagagattccttgatcttag
gagatcatcactgtgaagagatttcattaaaatatttattcaatataaag
ttataatacaaagttaataagtgattgacccctaaaaacagcaaaaaact
gcagaaaacagcgtttttagacgtcaatcagcttataacattgtttgata
ttttttgactgaatgattatttttgagaatttttttcacagtaatgACAT
TCGATGATTAagaattcacttcagtgaaaatgatagctatagcatttttc
tacaagatcttcatttttttcttcttcattttcatcttcatttttatgat
ctttttaaagttttttttatttcaaattgttccactcactaatatctttc
caatgatgccaaatttaaaaagattgaggaattccttcaaaagttataag
taaaagaaaaaagagtgcacacttatcgtgaatagactttaagtaTTTGG
TaatatactatatatatactaaAACCTTAAAACCAGTAATTTTTGCGTCC
T Run BLAST on NCBI transcript from alignment at scaffold_154:419433..421633- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049275 ID=TCONS_00049275|Name=TCONS_00049275|organism=Clytia hemisphaerica|type=transcript|length=2201bp|location=Sequence derived from alignment at scaffold_154:419433..421633- (Clytia hemisphaerica)
TTTAGCTGACCTCCTTCTTCATCAGTTTGTACACTTTTATTCTACACAAC
AAATCAAACGGAAAATTCCTCATGAAAATTCACTTCTCAAAACCCTTGGT
ATACAGTTTATGCCTAATATTACATGGACACGTAGCTCGATGTCTGATGT
GGTTGACTGTACTCGTCGAAAGAATCCCTTTACTGGGCGTACGTAAGGCG
TTATGGGCGTTTCGAGATATTACAAGTTATGCCGAGACTTTCACACACGC
ACTTCCACAATTATTCCTTCAGATGTATATAATCGTGCTTTATAATGGTG
ATTTTAATGCAATCCAATTAATTTGTTTTGTGTCGTCATGGTTATCGGCA
GCCTGGGGTATACAGTCTCAATTTGACGGTATAAAATGGAAATTATTGAC
GTTCGAAATGAATCTGTTTTGGTTTGCATCCAGAGCTGCGGCGACCACGA
TGTTAGCAAGTATCCATAAATCAGCACCATTCATCATGATCCTCGGTCAT
TTTCTCTTAATGTTTCCGTTATGGTTCTGGCAAAACAACTTTAAGCCATT
CCGTAAAAAACGAGGCAGTAACCGATTTGAATTAATCATCACCGATGCAT
TTTACGCTGGTATTTACGCCGGTAGTAACACGGCTACTCCAACGACATGC
AAATATCAATTCTGGTTAGCTGTTGTATTGTTTTTTGAGAATATTCTATG
TGTCATTCTTGGAATGCGATTCGGGACAGTTCAACGTCCTCTGGAGCATT
TCATTAACAATCAAATGGAATATAAACATCATAGATTGAACTATGGCGAT
TTGCTCAATAGAACAGCAGGTTATTGTGTTGATACTCCTCACTGGAAGTA
TAAAGTTCACTGTACAGTACCGTATAATACTTGGATTAAATCAAGAATCA
CATCTTGGCTAGCCGTCGGTGTCACCGTATTTGCTTTCATTCAGCTCGTG
ATTATTGTGATTCTACGGCAACGAAAAATCATCGCCGAAGACGCCATGGT
CTCCAAGCTTGGTGCTGCAAAACAGCTAAGTAAAGCTGAAGGTAGGGTTA
CAGCTACTTGTTCAGAAGCTACCGAATACAATACCCGAATGACACCGGAG
CCCTCGCCGTACATGAACAGAGCATCACCCTGCGTTGACAAAGAATTTCA
TCAACCATCACTTCTGGCAATCTCCACTGACCAGTCTTCTTTGTCAAGAG
CGAAGAATCAAACATTAGATTCACCAAAACCGTTTGTTCACCCCCGTCTC
AGTGATAAACATTCATCATCTACAAACAATATATTCAGTCAAAATAATAC
TAGGAATCGGAGCGAGCCGGGGGCTTCGTCGCCCAGTCTTTCAGTCACTG
TTAAGGATATCAACATTGAAAGTGTATCAGTGACGCAAACACCATCATGT
AGCCAAGCTGATATAAGACTTCATATGGATATTACTGTAAGCCGTAAGAA
TAGTCAGAACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCTTTT
ACTTATAACTTTTGAAGGAATTCTTCAATCTTTTTAAATTTGGTATCATT
GGAAAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAAACCTTAAAAA
GATCATAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGT
AGAAAAGTGCTATGACTTTCATTTTCACTGGAGAGATTCCTTGATCTTAG
GAGATCATCACTGTGAAGAGATTTCATTAAAATATTTATTCAATATAAAG
TTATAATACAAAGTTAATAAGTGATTGACCCCTAAAAACAGCAAAAAACT
GCAGAAAACAGCGTTTTTAGACGTCAATCAGCTTATAACATTGTTTGATA
TTTTTTGACTGAATGATTATTTTTGAGAATTTTTTTCACAGTAATGACAT
TCGATGATTAAGAATTCACTTCAGTGAAAATGATAGCTATAGCATTTTTC
TACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTATGAT
CTTTTTAAAGTTTTTTTTATTTCAAATTGTTCCACTCACTAATATCTTTC
CAATGATGCCAAATTTAAAAAGATTGAGGAATTCCTTCAAAAGTTATAAG
TAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAAGTATTTGG
TAATATACTATATATATACTAAAACCTTAAAACCAGTAATTTTTGCGTCC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049275-exon-scaffold_154-1575043694:419433..421633 | TCONS_00049275-exon-scaffold_154-1575043694:419433..421633 | Clytia hemisphaerica | exon |
| TCONS_00049275-exon-scaffold_154-1510915933:419433..421633 | TCONS_00049275-exon-scaffold_154-1510915933:419433..421633 | Clytia hemisphaerica | exon |
| TCONS_00049275-exon-scaffold_154-1491911889:419433..421633 | TCONS_00049275-exon-scaffold_154-1491911889:419433..421633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:419433..421633 - |
Blast
The following BLAST results are available for this feature:
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