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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049267 ID=TCONS_00049267|Name=TCONS_00049267|organism=Clytia hemisphaerica|type=transcript|length=766bp
CAACAACATTCTGAAGATTACCAATAACGAATTGAAACGATGAAAACATA
TTAGAGCATTGAAGATACAACTAcgataaaatgaaattaatctGTTGGAT
TTTGGTTAATGTGATAATTCTCGCATCTTTCTTTGAAGTGCGCGAAACAG
AAGCATCTCCGATCGTTCATCTGGATAAAATTAAAGAACTCTGTACTCAA
CAATTCAACACAAAGATAGTTGGTCGTGCAAAAATATGTATGATGTTGTT
AAAAATGGGTCTACGTGGAGAgtcaaagaaaatcaataaacagatACAAG
CTACGAGTGTAAAACTTGCTAAACAAATCGATAAAATACTATCCCTCAAA
CGTAATCGGTGAATGGAGCCAGTTTCTTTTCTAGAATGTATATTATAGTT
TTAGAGTTTTGAAGCAAAtcttattgatggagaataattCTTGCGATGAA
TGGTGACAAAGAGGTTGAAACAGACAAGAGGGATATTTTTCATCAGAATG
TTATCATCAGTCAGCAGACgttgttttgatgtttgttTACCTAACGTCAT
ATATGGACACTGAAAACGTTACTTGGTCACACTATGAACGTTATACGAAC
GTTATATAAACGTTGTTGCTATCTGCCGAGGTACAATTcgggtcaaaata
tattgataattttggcgtttttagaaatttaaagttcgggcgagaaagtc
gcttttgggctatttGTTAGGTTTAATCGAATACTTTAATTCgagagggg
tttatagacttccagg Run BLAST on NCBI transcript from alignment at scaffold_154:319021..322078- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049267 ID=TCONS_00049267|Name=TCONS_00049267|organism=Clytia hemisphaerica|type=transcript|length=3058bp|location=Sequence derived from alignment at scaffold_154:319021..322078- (Clytia hemisphaerica)
CAACAACATTCTGAAGATTACCAATAACGAATTGAAACGATGAAAACATA
TTAGAGCATTGAAGATACAACTACGATAAAATGAAATTAATCTGTTGGAT
TTTGGTTAATGTGATAATTCTCGCATCTTTCTTTGAAGTGCGCGAAACAG
GTAAGACTACACCTAGTTATTGCATACAGATTGGTTTTAACGCTCACCTA
ACGTTATATGGACGTTTAATTTTTTTTATAAGAACCAATCCCAGGGGGTA
CAAGGTTACGAGGTGACGGCGGGTATGTCCGAGCCAAAAATCGAAAATCA
ACCCTTAGAGAGAGGAAAAATAGGCGTTTTTGGGACCCTTAGAGAGACCT
TTGAGAGAATTTTGAGGGTGTGAAAAAGGTACCCTTATGGCTCGCACATA
CCCGGCACTTNCTTTCGAGGGTGTGAAAAAGGTACCCTTATGGCTCGCAC
ATACGCGGCACTTAAGTACCCCTCCCCGGAACCAATAAATTTTTGTTCCA
GGTTGACCTATTCTTAATCTTTTTGAAATCTTCAGGATTAAATGATGTTC
TTACGATGTTCTTACGATGTTCTTAATACTTCATTGTTTCTCGACTTAAA
AAACTTAAAATCAGTAATGTCAAGTAATTTTTGAAATCGAGGCTCACAAT
GTTCCTAATTCCTTGTTTAGATTTGGGACAAATTTCAGCCTTGTGCTCTT
ATAAAATAGTTCTTATATAAACAAAGCGTGTATTTTTTCGTTAGTTTTTT
GGCGGCGATTTTTTTACCGATAAGGTCATAAAGAAACTCCCCTTATTTAC
TTTTAAAGATATGCCAAAAAGTAGTCGAAAACACTTAACAAAACACGCGG
CGGTTGGTTTATCAAGTAATTTAAAAGTTCCACTTCAATTGCACTTACAC
TTAATTTTCGATTAAATTAATCATTTTAGACATTCCAAAATATTTTTCCA
CCAAAACAAGATAATTACTAATAGACCATAAACGTAAATTCATAATTGCG
TTGTCAAGGTAAAATCAGATCTTAATCTTTGGGAAAAATTTCTGGACTGA
CTGAAAATATAATTACATTATCCTTTTTTTGCACCCTTCTAAGGCAGGCT
AGTTTCTAAGGGTTTGAGCCTCAAAATTATTCTAAAATTATTCTTGTAAA
GGGTGTAAGAGTCAAATTCATTCAATTTTTTTGACGACGACCTGAAAAAT
TTAAAGTTCTTTTATGCCATTGAGCTGGCATCTAGAATCAATNCTGAAGA
ATTTAAAGTTCTTTTATGCCATTGAGCTGGCATCTAGAATCAATGGGTTT
TAATATTTCCTTATACATTCTATTTTGTCAAAATATTGGCCTTTTTTGGA
AGGTTTCAAAATGGGATAATTATCAGTTTATGAAAGGTAGGAATTAAGAT
AATTAATCATTCGATAATAAGATTCGTGATTCATTTGTCCTTTAAATAGA
TACAACTCGATTAGACATTCTCATTGCCGACTTTACACAATAAGACCTCC
CCCTTTCAATTAAACACGTGTATTTTCTTCAATATTTCTCCATGCTGTCT
TCTCATTTCATAAGGAAGCTAACCTTTAGGATCCGCAGCATCTTTCATAT
GACGCAACCTATCCTTTTCTTTCATGTTGGGATAACGTAATTGCAAATCA
AGTAAATTTGTAACTAATAAAGTCCAACACGTTATCAAAATATAAGTAAA
AACAGTGAGATCCCTAGGGCCAACTACTTACAGATTTTACATAAACATAA
GAGCCTTTTTAACGTTTTATCTCTGACCGCATGTTATTAGTTCGAAAAAG
AAGGATAGGATATCGAGGCAAATCTTTTTATGACTAAAAGAGGTAAAAAA
TCGCCGATCTTTCAATGCAAGGAAGTTTTTGTTCAATGTTAACAACAAAA
AAGTTGGGGGAGTTCTATCATTTTAAATACCAACTCTGTTTCAGCATATC
AAAAGAAATATTGGATACCACCTCTCTTTCAGCATATCAAAACAATATTA
CACCCCTGTGTCACAGGCCCGCTGGGGTCCCAGCGCCGCTGAAAAATTGA
CTTTGAATTCATCCCCATTCAAAGTTCCATGTTTATAAATTGCACTCCAA
AGCCATCACCACTGAAGTTTTAACCATGGAACAATAGAATTTTCATCTCC
ATTGACATTTCAATAGAAATTGTTGTCCCCGCTGTAGGGAAAAAGGTTCA
CCGGGGCTGTGATGCAGGTTGATTGAATACCATAACGGGATAACATGGCC
AACGCCATAAGTTTAAAAGTGGGGGGGGGGCAATGAATGAGTCTAAAGGG
CCTAAAGAGACGCAACCAAAAGTTTTTACTTTGCGAAAAATTGGGGGCTC
GGGGTACAGCCCAGTGGCGTGGGCCCTGGATAGAGTAGAGAGGTATTCAG
GCAGGGTTACATAATAAATTCTTTCTCATTTTATTCCTACAGAAGCATCT
CCGATCGTTCATCTGGATAAAATTAAAGAACTCTGTACTCAACAATTCAA
CACAAAGATAGTTGGTCGTGCAAAAATATGTATGATGTTGTTAAAAATGG
GTCTACGTGGAGAGTCAAAGAAAATCAATAAACAGATACAAGCTACGAGT
GTAAAACTTGCTAAACAAATCGATAAAATACTATCCCTCAAACGTAATCG
GTGAATGGAGCCAGTTTCTTTTCTAGAATGTATATTATAGTTTTAGAGTT
TTGAAGCAAATCTTATTGATGGAGAATAATTCTTGCGATGAATGGTGACA
AAGAGGTTGAAACAGACAAGAGGGATATTTTTCATCAGAATGTTATCATC
AGTCAGCAGACGTTGTTTTGATGTTTGTTTACCTAACGTCATATATGGAC
ACTGAAAACGTTACTTGGTCACACTATGAACGTTATACGAACGTTATATA
AACGTTGTTGCTATCTGCCGAGGTACAATTCGGGTCAAAATATATTGATA
ATTTTGGCGTTTTTAGAAATTTAAAGTTCGGGCGAGAAAGTCGCTTTTGG
GCTATTTGTTAGGTTTAATCGAATACTTTAATTCGAGAGGGGTTTATAGA
CTTCCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049267-exon-scaffold_154-1575043694:321929..322078 | TCONS_00049267-exon-scaffold_154-1575043694:321929..322078 | Clytia hemisphaerica | exon |
| TCONS_00049267-exon-scaffold_154-1575043694:319021..319636 | TCONS_00049267-exon-scaffold_154-1575043694:319021..319636 | Clytia hemisphaerica | exon |
| TCONS_00049267-exon-scaffold_154-1510915933:321929..322078 | TCONS_00049267-exon-scaffold_154-1510915933:321929..322078 | Clytia hemisphaerica | exon |
| TCONS_00049267-exon-scaffold_154-1510915933:319021..319636 | TCONS_00049267-exon-scaffold_154-1510915933:319021..319636 | Clytia hemisphaerica | exon |
| TCONS_00049267-exon-scaffold_154-1491911889:321929..322078 | TCONS_00049267-exon-scaffold_154-1491911889:321929..322078 | Clytia hemisphaerica | exon |
| TCONS_00049267-exon-scaffold_154-1491911889:319021..319636 | TCONS_00049267-exon-scaffold_154-1491911889:319021..319636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:319021..322078 - |
Blast
The following BLAST results are available for this feature:
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