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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049233 ID=TCONS_00049233|Name=TCONS_00049233|organism=Clytia hemisphaerica|type=transcript|length=1301bp
aaaaaatgaacttcatcGGGAGGGTTTAAAGTACCTCTGTAGCTGTACCA
AAGTGAAGTTTCTAGCGCAAAAGgtTGCAAACCCTGCTTACATCGGTACA
TTTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGATTGGCATTA
CGTCACAATTACATACAATGCTGCTTCAAAAAGCTACACATGGTCCAATC
GAGCAGGTATCTCATGGTCATTGTATCCTACAAGCAAGTCTGGTGAATTG
AGAGTTGGACAAGATTGTCCCTATTACTCAACGGGACATACAATTGCAAA
TTTTACTACTGATGGAGTTTATGGACCATGGAACGAACTGTATTCACGAA
AAGTTGGAAATCCATTGTTATGTGGAGACTTTGAGAATCACAAATACGAC
CTCAAAGGCAAAAACGATTGGCATTACGTTCACATTGATTACGATGAATC
CACTCAAAAATACACATGGTCCAACAGAGCCGGAGTAAAATGGTCCATGT
ATCAGACTAATGTTTTCAACAAGTTGAGAGTTGGAAAAGATTGTCCTTAT
CTCAAAAACGGATACACAGAAgctattttaaatgaaaatggCATCTATGG
ACCTCATAAGGAATTCTATGACAAGAAATagattttttctgcaaaattcA
TCGAACATACACGTTAAATCAAAGTCGTTGGGAGCTGGAAAAAAGGTATT
CCAATAATATCtgaatttagatttttcttttacTAACTTAAAACCGagtt
gataaaaataaatattatttcttaaaaattaactATTCTATAAACAATAT
TGTGTTTCTAAACGCTAGAATTAATGGATAAgttattgaaagaaaatatc
GAATCTTATCATTACTGTTTCGAACTCTTTTTTCGGCTTTTAGGCTATCA
AATTCAACTCTTCATCGGCTCGCAGTTTATCGGCTGTATTTCGCTACACT
GATTATTAAAAAACGTGATATagtttattcaaaatttgcatCGATGGAGA
GTATTCCCTTTTCCTCAATTTTATAACGCGGTTTAGAATGTAAAANGTGC
ATCGATTGAGAGTATTCCCTTATCCTCAATTTTAAAACACGGTTTATAAT
TTAAAATAGTTTTCTTTTAGTAAAGGTTAACTTAACTGCATTTGTTCAAA
TGACACGATTTACTATTTCTTATGCTTCCGCAACGGTCTTTGAAACTTTT
AATCTTATTCGTAACAGTGATGTTCTGATTAAGGGTTCCTCATCTTTATA
CAATCATTGACTTGTGACTTCAACACCAACAACAGACAACAGCACAGTTC
T Run BLAST on NCBI transcript from alignment at scaffold_154:748826..757467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049233 ID=TCONS_00049233|Name=TCONS_00049233|organism=Clytia hemisphaerica|type=transcript|length=8642bp|location=Sequence derived from alignment at scaffold_154:748826..757467+ (Clytia hemisphaerica)
aaaaaatgaacttcatcGGGAGGGTTTAAAGTACCTCTGTAGCTGTACCA
AAGTGAAGTTTCTAGCGCAAAAGggtaaaattcatttttcattcattgta
ctttatttttaatttttaacaaatCAGAACATGaagtgaaattgaaaatg
actaTTACCTGTTACTGCCGATAAAACGTTTTCAAAGACAATGCATGAAA
AAGCAATGGTTAATATCATGTTCAACTTCATTCTGCTTTTGATTGGTGTT
TGTTGCTCCGTGTATTTTctctttgattttcttctttattccACTGCTTC
TTACTGCTACTGATCGATCTCTCAATTTGAATGATCAACTAGAAATTCAA
CCGTCTATTCATACCAAAGTTTTAGGGGCGCAAAATCTTCCATTTTCCTT
ATAGAAACTCtcatttttatcataaatttcaCACGGAAATGACGGGAAAT
TTatgcaatttttttaattacacCAATTAAGTGGTCACTATAATGTCTTC
AATTACCGTTTTGATAGTTTCGATGCTTTTCGATATGAAACAGATTTATG
ATTCTCTGTGCAGCTTGGCTAACGTTGTAAGACAGAAGGACAACCCAGAA
AATATCTGTTCCATGATCAAAGTGAAGAAACAACCACGAGGATACACTAA
TACACCGTAAAATCAATAACATGTGCGCCAAATTCAAATCGCACTTTATT
AGACTATTTCATTTGATTAGTACATGATTATTTTCTACGTCACCCCAGTC
ATTATCTTTTTATGGTTGAGCACTCTTGCGAATTAAGATATTTTTGTCTG
CGACCACAGTCGGAGGCGAGCCGAAAACTCCACTTACGATAGCTATCTGC
CCGAAGTTAGAGGAGGACGCCACTCTTTCTTCctagattgctccacttac
cgtTGATCATTCTCTTTATTGTTAAGAGTCAAGTACCATTTCTGTAAAAA
AGTTTTGGGTATGACCCGCCCATGGATTGAAACAACGACCGAAGCAACTA
CCTTTGTACCATACCTactttgataaaatcttttagACAGTTTGATACAT
AAGTTTTACCAAAGAcaacaaaaaattcttgaattcTTACGTATGGCGAC
CAAAATATCGTATCTTTCTTGTGAAGGGAGTTTTGCCACagatttgtgat
tttttccCCTTGTGTAAATTGCGAAAATGGCATACAGCAGTACACGAGTT
TATTAAATAAGCTGAAAATATAGCAAATTCGCTAATATCCCTAATACTCA
CTTTGAAGCAAGGTAGATGATTTCTCTCGGGAAGAAAAATGTTTGGAGCC
TATTTAGTCCTTCCATAAACTTAATGTGAATAAGTGAATGAAATGTCGAG
AAAATTCGACTGACGTGGGGTTCCTGTCACCTCTTGTATACAAAGATTGA
TTTCATGATAAAAGGGAGTTAAAATTTATTCAACTTTTCTCctgtattgg
gctcttccagaaaaaatccgttcatggggggtgaaGGATGAattgtacag
gggtattgaaaaaataccaaaaaattgcaatgcccaggggtaattttttg
tgtccacagggttgatttgatgtttgtccaggggtataacccgtgtccag
ggggttaaaaatcacaATGttcaggggtaattcatgaaaaaaataatata
tcctccacccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCAATGATTTGCAACGAAGgatacc
atgatgaagtttcgctgtaggggtgttacctaattgtttacgcccttatt
ttcgcgaaaaaccgcaaaaactaaaaatgctgacgtcagcaaaacttgtt
ttttgaataactccagtttggccatagatagaaacatgaaatttggactg
aaGTTAGACATCATTtaaaggatcattttgcaaaaaaaaatttttgaaat
tttgctgacatcagtactttattgcaaaatttcgtattttgctgatttct
gctgacgatAACAAAATTTCGNNgtttttcgcgaaaataagggcgtaaac
aattaggtaacacccctacagcgaaacttcatcatggtatccttcgttgc
aaatcattggtttcctcattttctgccggttaatggccttcaaaaattat
gataattttcaggtttttgagacatgccataacttacctgagatTCTAAA
TGACCTtacatacagtatatggcccccaaaacggagacggcccNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNggttttcatgcagcaaaaatt
tttgtaaaatctcttttcctctagatttgagagaaattttaaatttgatc
gccgttttgggggccacatactgtacgttaaaaactaaaattaaaaactc
ATTAACAGGTTAAGAAGCGTGATTGAAGAAGGTGTCATATTTCCTATAaa
tatctttttgaaaaattcttccactTTAGAAATTGCGAAAGATTTTAGCG
TTGTGGTTTTTGAAGACTCAGACAAAAGATTGACATGCAATCGAAAACTA
ATTAAAAAACGtcattaaagggacattaaagtagtaaaatgtaaacattg
cgcgaaccacgtgtcattaaagagaacaatttaaatcacgtgtccaaaac
aaacttgtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGGtttgatgttttattttgacatgtgacatttgttt
tgattttgtatccgctgcatacagtttgtttacaaatttcgcaagtactg
ttatgtccctttaaagcaGCGATGTTATGTTCTGataaaaaaggaagaaa
tttttaacgatttttgtaAATAGGCTAAAAATTTAATTCTACTAAGGAAA
TTAAACCTCTCGTCGAAATGAATATTCCCACCTTATCCATACGTCTTTTT
CCCTTGTTCCTATGTTCTAGTCTTCTTTACAAAATTTACAGCTTAAACAT
CCCGACTCCTGTTACattattatctagcgctatcagtaagcataaaaaag
ctgataatatgcagggaacgaggttggggcTGAAATTGTGGGTAGTCCCC
CCCCTCATCCGGGGGGGGGACGAAGTCTGTAAAATCCAAGCCATAAACTG
ATattgcttagcatatgcttaaccTTTTTTTGAGCCAAGAAGTGCAAtgg
ttataaaaaacatgtatatcaGGGAGTAGAGGAACTTGCCAGGGGGTATT
TCAAGAAGAATTTCCATGGGATCTAAGGAAAGTTTTGGTGTTTTACTGGG
ggtgtaataaaaaaatattagaaacctactttactcttaggttccaaata
gaCGGGGGAGGGGTTTAAATGGACGGAGGGGTAGGGGGTTggaaaagttt
taaaactttgatAAATGGTGGGAACCTTATTGTCGGGAGGGGTTGGAAAT
TCTAGTTCTGAAAACCAAAAAATAAGGTTAAATAAATAttggctaaaatc
aggctatttaaaACAAACTATTTAGACCATTGTCGAAAgcttgaaaatat
tctttaaaattaataaacagggggggggtcctaataaggtcagGGGGTAT
TTTCGAAATACTAACAAGCAGGGCCCCGTTTATTTGGAGCCTAAAAGTCA
AAGTAATGCTACAGGGGTGTTAAAATTAATCTAAAACTTTGAGAGGGTAA
ATGACCTATTTTAGATCGTCCACCCTCATTTATTTGgcgaaattttccat
ttttccaggCGGTTTCcacatattttcaagatttttgttttttactttga
aaagttGGTCCACCTGTATGGATAttaaatggaacagcccaataaaCATT
GAAATAACCTGACTACTGCATGCCCTTTTGTTAAAAAGGAAAGTTCTTCA
TCATGTAAGGTCTTTATTTCTACTAATGCAGGGCAGTTAAAACAATGACC
TACATCTCAGCTATTAAAAGACTTCAATGAAAAACTTTCGTATCAAATTA
AATAGAAATTTGTCACGCAATGACGTTTGTAAAGCATAATTAACAactta
atTATTGCATAATAATGCTTTAACTCAATAATGAagtcaaaattttactt
tttctactTTCAAAGCAAAGTTTAATGTTAATGAGAGTTTCGCAAGGAAA
AAGGAAGATTTTGTGCCCCTAAGATTTTGGTATAAATAGACGGTTAAATT
TCTAGTTGATCATTCAAATTGAGAGACCAGTAGCAGTAAGAAGCAGTgga
ataaagaagaaaatcaaagaaaaaacacACGGAGCAACAAACACTAATCA
AAAGCAGAATGAAGTTGAACATGATATTAACCATTGCTTTTTCATGCATT
GTCTTTGAAAACGTTTTATCGACAGTAGCAGGTaataattcaattttaat
tttgcttTATTATTGAATTCTGCAACATCAGAATACTTTGATTTCAAACA
ttgcttcttcatttttaaagcaaaaatagtcCCTGACAAGGTTTATGGTT
GATTCTTGGTTGGTACNTTGTGATTGAATTCTGCAACATCAGAATACTTT
GATTTCAAACAttgcttcttcatttttaaagcaaaaatagtcCCTGACAA
GGTTTATGGTTGATTCTTGGTTGGTACTTCTTAACAACCATTCATTCGCT
ACTTTTATTCGCTTATTTATATCCattcgtttttattttcacagtTGCAA
ACCCTGCTTACATCGGTACATTTGAAAACCTCCAATACGTCAAAGGAGCT
GGAAAGAATGATTGGCATTACGTCACAATTACATACAATGCTGCTTCAAA
AAGCTACACATGGTCCAATCGAGCAGGTATCTCATGGTCATTGTATCCTA
CAAGCAAGTCTGGTGAATTGAGAGTTGGACAAGATTGTCCCTATTACTCA
ACGGGACATACAATTGCAAATTTTACTACTGATGGAGTTTATGGACCATG
GAACGAACTGTATTCACGAAAAGGTAATGATTTTAGATTGAATGGTAAAA
ACAAAGTTCACCTGAAAAGATTATCTTTATATTTTCACCAATTCCAACTT
AAGGCCTCTAATCATAATTAAAGAATGATGAGTTGGTAGTTATTTTTGCT
TTCTTAATGATGAAATTGTCATCTTAAGGGATTTTAAACTTAACTGGTAA
AGTCAAAGTTTTACATCGATCATAGTTTGTTTTTCACTTTATAGTTGGAA
ATCCATTGTTATGTGGAGACTTTGAGAATCACAAATACGACCTCAAAGGC
AAAAACGATTGGCATTACGTTCACATTGATTACGATGAATCCACTCAAAA
ATACACATGGTCCAACAGAGCCGGAGTAAAATGGTCCATGTATCAGACTA
ATGTTTTCAACAAGTTGAGAGTTGGAAAAGATTGTCCTTATCTCAAAAAC
GGATACACAGAAgctattttaaatgaaaatggCATCTATGGACCTCATAA
GGAATTCTATGACAAGAAATagattttttctgcaaaattcATCGAACATA
CACGTTAAATCAAAGTCGTTGGGAGCTGGAAAAAAGGTATTCCAATAATA
TCtgaatttagatttttcttttacTAACTTAAAACCGagttgataaaaat
aaatattatttcttaaaaattaactATTCTATAAACAATATTGTGTTTCT
AAACGCTAGAATTAATGGATAAgttattgaaagaaaatatcGAATCTTAT
CATTACTGTTTCGAACTCTTTTTTCGGCTTTTAGGCTATCAAATTCAACT
CTTCATCGGCTCGCAGTTTATCGGCTGTATTTCGCTACACTGATTATTAA
AAAACGTGATATagtttattcaaaatttgcatCGATGGAGAGTATTCCCT
TTTCCTCAATTTTATAACGCGGTTTAGAATGTAAAANGTGCATCGATTGA
GAGTATTCCCTTATCCTCAATTTTAAAACACGGTTTATAATTTAAAATAG
TTTTCTTTTAGTAAAGGTTAACTTAACTGCATTTGTTCAAATGACACGAT
TTACTATTTCTTATGCTTCCGCAACGGTCTTTGAAACTTTTAATCTTATT
CGTAACAGTGATGTTCTGATTAAGGGTTCCTCATCTTTATACAATCATTG
ACTTGTGACTTCAACACCAACAACAGACAACAGCACAGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049233-exon-scaffold_154-1491911889:748826..748899 | TCONS_00049233-exon-scaffold_154-1491911889:748826..748899 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1510915933:748826..748899 | TCONS_00049233-exon-scaffold_154-1510915933:748826..748899 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1575043694:748826..748899 | TCONS_00049233-exon-scaffold_154-1575043694:748826..748899 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1491911889:756020..756298 | TCONS_00049233-exon-scaffold_154-1491911889:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1510915933:756020..756298 | TCONS_00049233-exon-scaffold_154-1510915933:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1575043694:756020..756298 | TCONS_00049233-exon-scaffold_154-1575043694:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1491911889:756520..757467 | TCONS_00049233-exon-scaffold_154-1491911889:756520..757467 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1510915933:756520..757467 | TCONS_00049233-exon-scaffold_154-1510915933:756520..757467 | Clytia hemisphaerica | exon |
| TCONS_00049233-exon-scaffold_154-1575043694:756520..757467 | TCONS_00049233-exon-scaffold_154-1575043694:756520..757467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:748826..757467 + |
Blast
The following BLAST results are available for this feature:
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