|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049231 ID=TCONS_00049231|Name=TCONS_00049231|organism=Clytia hemisphaerica|type=transcript|length=4101bpRun BLAST on NCBI protein sequence of TCONS_00049231-protein >TCONS_00049231-protein ID=TCONS_00049231-protein|Name=TCONS_00049231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp MADDPTLRQRFPQTIEEENNEKENEQAEAPKPGLKKSNSEDLSKMIAEMNRun BLAST on NCBI transcript from alignment at scaffold_154:736531..747194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049231 ID=TCONS_00049231|Name=TCONS_00049231|organism=Clytia hemisphaerica|type=transcript|length=10664bp|location=Sequence derived from alignment at scaffold_154:736531..747194+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:736531..747194+ >TCONS_00049231 ID=TCONS_00049231|Name=TCONS_00049231|organism=Clytia hemisphaerica|type=CDS|length=21600bp|location=Sequence derived from alignment at scaffold_154:736531..747194+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049231 vs. Swiss-Prot (Human)
Match: CDS1 (Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2) HSP 1 Score: 416.001 bits (1068), Expect = 2.894e-131 Identity = 205/416 (49.28%), Postives = 276/416 (66.35%), Query Frame = 3
Query: 192 KKSNSEDLSKMIAEMNPKWKNWWIRGFFTLVLLAAFYGFIYFGPSGLVVLIVMITTKCYHEIISVGHQVYKKYNLPLFRTLSWYFLAATVYFIFGELLTDYFAQFF-RNTGFLFLLRRHRLISFLLYTIGIMLFVWSLRKNYYKVQFALFGWYLLTMMIILIPFYFAVQNVLSGLMWFFLPVLMVICNDIFAYIFGFFFGRTRLIKLSPKKTWEGFIGGFFSTVIFGQAVCQIMTQYKYFHCPPQFTASSFTFVMDCKPSPTFQLAHQFDINPHIFAVFQILPAFIKDALLQFFSFAGFHLLNNTEVWMYPMVLHGFVLACFSSLIAPFGGFFASGFKRAFKIKDFADTIPGHGGIMDRFDCQYLMMTFVNVYIASVVRAYNPNKLLHQVMFMEKDHQVKFYHKLQEMLTEQGLIQ 1436
E L K ++ ++ +WKNWWIRG TL +++ F+ IY G L++L++ I KC+HEII++G++VY Y+LP FRTLSWYFL YF +GE + DYFA F R FL+R HR ISF LY G +FV SL K +Y++QF +F W +T++I + + +QN+ G++WF +P+ VICNDI AY+FGFFFGRT LIKLSPKKTWEGFIGGFFSTV+FG ++++Y+YF CP ++ + +FV +C+PS FQL LP F+K L Q V +YP +H L+ F+SLI PFGGFFASGFKRAFKIKDFA+TIPGHGGIMDRFDCQYLM TFV+VYI S +R NP+K+L Q++ ++ + Q+ Y L+ L E+G++Q
Sbjct: 65 SDRTPEILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYHSYDLPWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMFAWTHVTLLITVTQSHLVIQNLFEGMIWFLVPISSVICNDITAYLFGFFFGRTPLIKLSPKKTWEGFIGGFFSTVVFGFIAAYVLSKYQYFVCPVEYRSDVNSFVTECEPSELFQLQT------------YSLPPFLKAVLRQ------------ERVSLYPFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIRGPNPSKVLQQLLVLQPEQQLNIYKTLKTHLIEKGILQ 456 The following BLAST results are available for this feature:
BLAST of TCONS_00049231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.