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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049230 ID=TCONS_00049230|Name=TCONS_00049230|organism=Clytia hemisphaerica|type=transcript|length=2212bp
gttttgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgtttgat
tgattggttgattggttgattgattgattgattgattgattgattggttg
attggttgattgattgattgattgattgattgattgatcacATTATTATA
ACATGTCCTTCTTTTACTTATTAGGGTCCTCATCGAGCTTAAAAGTATCA
AAATTCGTCACTAAATCCAAATTTGGCGCCCCGTCAACTAAACGAAATAG
CAACCAACTCAATCCAGAGAAATACGCCGTTGCCGCAACTAAAACAACAT
CTAAAATTACGACGACTTCCGGACGCTGTTTAGTCAATCCCACCGGTGCA
GCATCGAGTGTAAGGCAAAACTTACCATCTATTGCGACTTTAAAGAACAA
CGGGATCGTTGTTCAGGGCAAATCGCTACCGTTAACAATCACAAATATCA
GTTTAACCAATAAGAANTCAGGGCAAATCGCTACCCTTAACAATCACAAA
TATCAGTTTAACCAATAAGAAGCTAGTTACCTCTGGCAACGCTGGCAAAA
TGAACCAATCAGCTTTCTTACCAAATGATCAATTCACACGGCGATACGGG
AGTCCGGAGAACGATAAAATGACGTATGCCGTCATGACATTGACGCCGCC
TTCCTCTCCGATGACGGGAGGTGATACGAAAGAGACCATAGAAACAGTGA
CTGAAGATGTTGGCAATCTAGTGGATGAGCACTTCAGAAATTGTGGTATT
GAGAATTTCACCATGAACAAAAAGGAGACCACGAAAGAGAATGAAGCTGA
TGacgaaatgaatgaaaatacTATACACGACTTCTTGAAAAGTCAGAATC
AAATGATGAATCCTTATGAAGTCGCTTCACCGGACGATTCTTCAGAAATG
CTTCTCCACAGTGCTTCAGATGAAGATGAAGACCAACCTCTACAATGTTC
CTTCTCACAAATACTCAAAGGAGGAGATGTCTTTTTCTCTGATTTCCTGA
GCGAACCAATCGAATTCAACAATAACAATAACATTACGTCATCGCTTTCT
AAATCTAATTTTACGGCACCGGGAAGTATGAGTGGTGCCCAGTCTACCGC
TCAAGCGTTTAGTAATTTGGTGAACAGTATGAATTTAATAGATAGTTTCA
TGGAAGgagcgatgacgtcatcgcttTACCCTGGAGTCGAGGATGAGGAA
TTTTCAACTATCAATACAAAATCGCTTCAAATGTCGTTTTAATGGATTTT
GATATAAAGCCATAAAACAGAGGATGAATCTGCGAGCATGGAGTATTTCA
CTATTTGCGATGAGATGTTCAGCCCGTGGTGTCTGAGTGACGTCNATGGA
GTATTTCACCATTTGCGATGAGATGTTCAGCCCGTGGTGTCTGAGTGACG
TCATAGACAGTTTATTTAAACCAGAGACTCGCAAACCGATACTGAAGGAc
tgaaaaaggagaaaaatgtTGAACACAGGTTTCTGTATCAGTCAAGCAcg
ttgaaaacaaaaccataTTCGAATATTTAAGTTGAATAATTCCATAACCT
TTTGCCACCGTAAAGGTTgtgaaagtgacatttccaaAATGTTATTGGTC
ATATTTTGAATGATCGTGGCACGTACTAAATAGGCTACTGTACGCATCCc
atctgatatgatttgatatatattaaaataaattctggggatgcgcgcag
cctacATACTAAATGTTGGAATATATTAAAAAAGTGAATAAACAATATAT
aacgaaatttttgaattttgtaagGCTAAAAATATTAGTAACCTCGAATA
GTTGACACATAACGTCGAAAAATCGGGCATCCATAGCATGCTTATCTCAT
AACATACCATCCATTCTGCGCACCGCGCTACACTCTACCACTCTAAAGGG
ATAATGTGATTGTTCAGCCAAAAAATTCAAACCGCGTTgctttttacttg
aaaacaaaNTTGTGAttgttcagccaaaaaaatcaaaccgCGTTgctttt
tacttgaaaacaaacaCGAAAGTGCGGATTCTGATTACTCTGCGCATGGC
ACGTATATACTCTAAAAGCCATGAGTCTGTAAGAGAGTCTATCTAGGTTG
GCGGTctgctttgatctttttcatacagtttttGGATGAGATTTTAAGCG
CGGTGATTGGCT Run BLAST on NCBI transcript from alignment at scaffold_154:696570..700610+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049230 ID=TCONS_00049230|Name=TCONS_00049230|organism=Clytia hemisphaerica|type=transcript|length=4041bp|location=Sequence derived from alignment at scaffold_154:696570..700610+ (Clytia hemisphaerica)
gttttgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgtttgat
tgattggttgattggttgattgattgattgattgattgattgattggttg
attggttgattgattgattgattgattgattgattgatcacATTATTATA
ACATGTCCTTCTTTTACTTATTAGGGTCCTCATCGAGCTTAAAAGTATCA
AAATTCGTCACTAAATCCAAATTTGGCGCCCCGTCAACTAAACGAAATAG
CAACCAACTCAATCCAGAGAAATACGCCGTTGCCGCAACTAAAACAACAT
CTAAAATTACGACGACTTCCGGACGCTGTTTAGTCAATCCCACCGGTGCA
GCATCGAGTGTAAGGCAAAACTTACCATCTATTGCGACTTTAAAGAACAA
CGGGATCGTTGTTCAGGGCAAATCGCTACCGTTAACAATCACAAATATCA
GTTTAACCAATAAGAANTCAGGGCAAATCGCTACCCTTAACAATCACAAA
TATCAGTTTAACCAATAAGAAGCTAGTTACCTCTGGCAACGCTGGCAAAA
TGAACCAATCAGCTTTCTTACCAAATGATCAATTCACACGGCGATACGGG
AGTCCGGAGAACGATAAAATGACGTATGCCGTCATGACATTGACGCCGCC
TTCCTCTCCGATGACGGGAGGTAAGTTTGACTTTTTTCGAATAAATAAGT
AAAACATAAAAAGCCATGTGTGATGATTACATAAATACATATCGCTATTT
CTCAATGAAACCTGTTTTAGTTATCAAagtaatcttgatttttttgactt
tggtgtttttttttcttgtgtaaaaatattttcgatattGTGCTGCTCAC
AATGGTTTCAAAGGAACGAGACAAGCGCTCAGCGAATAGAAATTTCTAGC
TGTGCGCTTAATATTGGATTGCGCTCTAATAAAACGATCTGGTGGAATGC
GGCCTTCAAACGTTCATTCTCGATTATGAATGCGTTCGTGGgacattcat
agcgacagctacttgctagttatATGTATACTTGCGCAGTGTAGTGTAGT
GCAATGGATAGctgtaaaatttaaaataaagacCCCGGAAATATTTACAA
CAATACACTGGTAGAAAATATCTTCTTTCAATTTATCCAGGATAGCCAAA
TTATTTCCCAGTTCCTTGATTTACTTGTTCTAAAATGTTGATAACGTTCA
GGGTTGTATCACgcccatcagtaaaatcaaaaagtggtgcaCGGAGCTCT
GGCTACTATCTAGCCCTATTaccctaattttttttctttcccatCTCTCA
TCAGGTGATACGAAAGAGACCATAGAAACAGTGACTGAAGATGTTGGCAA
TCTAGTGGATGAGCACTTCAGAAATTGTGGTATTGAGAATTTCACCATGA
ACAAAAAGGAGACCACGAAAGAGAATGAAGCTGATGacgaaatgaatgaa
aatacTATACACGACTTCTTGAAAAGTCAGGTGAGTAAAATATCCTAGAA
TcgtatgaatttgaaaagttatattACAGTCATGGCTTTTATTAAGTTGT
GCACTGGTAAATAGGATGCCTTTTTTGGGTccaatgacaatttttgaaat
attaaaacGACATAAATTGTTGACCTGAAAATGATATCCCTTTTCTCgtt
gtaagaaaaataaagcgtttaaaaaattaaacattttaaaCAAACTGTTT
ATTTACCTTATTCAAACTGCAATCAATTGTAATCAGCAATTAAAGATTAG
TTACTTTAATCACTTAATTACAGTCTTTTAAAATCTTCTTTGAGTATCTC
GAAATTATTGCAGGTCTTTACATaaaggccgctacccactcagcatttta
tggtcgtcgaacaaggcgcacggcttaattattgcataaattacataaat
caagcCTCCAAAGGCTGTCGCTTTGAGCGcaacaagagttgaaacttttt
aacttttttcgcgAAGCTGTACAGCTCATcctttgtttttctaaaatcaa
ccaatcagaaaagagaatttttttcttgtacCGTGTGCAAAAGATGTGTA
TCATGTGCAAACGATGatgaacaaaagaaaagagaaaaaatgtgcTGCAG
AGTGGAATGAGAAAAGCGCTCAGCGAACAAAGAGCTCGAGCCGTGCACTT
TGTTCggcgaccataaaatgctgagtgggtagcggcccTTAGAATAATGA
TGATAGCTATCTTTTCTGCTCTGGTCTATAATTAGCAGTCAGAAACACTA
ATTAACTCTGTAAATACTGGAGATAAACGCCAACCTAAGACACTTTTTTC
AGATATATACACttgaaaaatggtaaagaaatatttgaacGGTTTTCGGT
TGATCAAAATCATCAACGATCACAAACTTGAAGTCAGTTCCCTAACTTAG
TACGCTCTTCTAATTCTGGTAGCCATTATGATTGtactaaaattaaaaac
taGTACAATTCACTCCGGGTACGAGACTGTTTCGTTCACTTTCCCGTATA
gatttcaaggggaattggattatCATCGAATAAGAGGgtttatcgaatag
tagagtgtcgttaatgagagtttcttgttgacggcgatgattttcaatat
tatcgaataatggagcgtatcttATAGTAGCACGTCGACTGTATAAACAG
CTCTCCTTCTTTTCTCTCTCTTTAGAATCAAATGATGAATCCTTATGAAG
TCGCTTCACCGGACGATTCTTCAGAAATGCTTCTCCACAGTGCTTCAGAT
GAAGATGAAGACCAACCTCTACAATGTTCCTTCTCACAAATACTCAAAGG
AGGAGATGTCTTTTTCTCTGATTTCCTGAGCGAACCAATCGAATTCAACA
ATAACAATAACATTACGTCATCGCTTTCTAAATCTAATTTTACGGCACCG
GGAAGTATGAGTGGTGCCCAGTCTACCGCTCAAGCGTTTAGTAATTTGGT
GAACAGTATGAATTTAATAGATAGTTTCATGGAAGgagcgatgacgtcat
cgcttTACCCTGGAGTCGAGGATGAGGAATTTTCAACTATCAATACAAAA
TCGCTTCAAATGTCGTTTTAATGGATTTTGATATAAAGCCATAAAACAGA
GGATGAATCTGCGAGCATGGAGTATTTCACTATTTGCGATGAGATGTTCA
GCCCGTGGTGTCTGAGTGACGTCNATGGAGTATTTCACCATTTGCGATGA
GATGTTCAGCCCGTGGTGTCTGAGTGACGTCATAGACAGTTTATTTAAAC
CAGAGACTCGCAAACCGATACTGAAGGActgaaaaaggagaaaaatgtTG
AACACAGGTTTCTGTATCAGTCAAGCAcgttgaaaacaaaaccataTTCG
AATATTTAAGTTGAATAATTCCATAACCTTTTGCCACCGTAAAGGTTgtg
aaagtgacatttccaaAATGTTATTGGTCATATTTTGAATGATCGTGGCA
CGTACTAAATAGGCTACTGTACGCATCCcatctgatatgatttgatatat
attaaaataaattctggggatgcgcgcagcctacATACTAAATGTTGGAA
TATATTAAAAAAGTGAATAAACAATATATaacgaaatttttgaattttgt
aagGCTAAAAATATTAGTAACCTCGAATAGTTGACACATAACGTCGAAAA
ATCGGGCATCCATAGCATGCTTATCTCATAACATACCATCCATTCTGCGC
ACCGCGCTACACTCTACCACTCTAAAGGGATAATGTGATTGTTCAGCCAA
AAAATTCAAACCGCGTTgctttttacttgaaaacaaaNTTGTGAttgttc
agccaaaaaaatcaaaccgCGTTgctttttacttgaaaacaaacaCGAAA
GTGCGGATTCTGATTACTCTGCGCATGGCACGTATATACTCTAAAAGCCA
TGAGTCTGTAAGAGAGTCTATCTAGGTTGGCGGTctgctttgatcttttt
catacagtttttGGATGAGATTTTAAGCGCGGTGATTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049230-exon-scaffold_154-1491911889:696570..697289 | TCONS_00049230-exon-scaffold_154-1491911889:696570..697289 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1510915933:696570..697289 | TCONS_00049230-exon-scaffold_154-1510915933:696570..697289 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1575043694:696570..697289 | TCONS_00049230-exon-scaffold_154-1575043694:696570..697289 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1491911889:697924..698099 | TCONS_00049230-exon-scaffold_154-1491911889:697924..698099 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1510915933:697924..698099 | TCONS_00049230-exon-scaffold_154-1510915933:697924..698099 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1575043694:697924..698099 | TCONS_00049230-exon-scaffold_154-1575043694:697924..698099 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1491911889:699295..700610 | TCONS_00049230-exon-scaffold_154-1491911889:699295..700610 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1510915933:699295..700610 | TCONS_00049230-exon-scaffold_154-1510915933:699295..700610 | Clytia hemisphaerica | exon |
| TCONS_00049230-exon-scaffold_154-1575043694:699295..700610 | TCONS_00049230-exon-scaffold_154-1575043694:699295..700610 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:696570..700610 + |
Blast
The following BLAST results are available for this feature:
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