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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049227 ID=TCONS_00049227|Name=TCONS_00049227|organism=Clytia hemisphaerica|type=transcript|length=444bp
CTGAAATACCTTTAAATAGTTGATTTTTTTCCTCCTTCTTTTGTAGCATG
GTTTACTCAGGATATTAATTCTTTTTCAGAAATCTGCCGAGTATGTTAGA
GGTGCTTTAGATTCaatgtaaattttgttttcaactttCTTGTTAGATTG
TTTGCAACAGAATCGCCAAACAAAATATAATCCAACCAAAACAGAAGCTA
AGATTGGGATTTGGATGTAAGATGCAGTTTCCACAACATCAATACTTCTT
CTACCCATTTTCCTCATAGGATCCTCTTTATCACATCCAAACCGACATTG
ATGATCAGTTGTGTTTTTGCAAACGTAAGATTCACAATGGACGAAGATTC
CATTATTACCATTGGTAAACGTGAAAGCTTGGATACTGAATTGAAAGACA
TCTTTGGTGTATCGGTGCTGTTTGTAAGTGTCGTCTTTTGGGCA Run BLAST on NCBI transcript from alignment at scaffold_154:494406..495472+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049227 ID=TCONS_00049227|Name=TCONS_00049227|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at scaffold_154:494406..495472+ (Clytia hemisphaerica)
CTGAAATACCTTTAAATAGTTGATTTTTTTCCTCCTTCTTTTGTAGCATG
GTTTACTCAGGATATTAATTCTTTTTCAGAAATCTGCCGAGTATGTTAGA
GGTGCTTTAGATTCaatgtaaattttgttttcaactttCTTGTTAGATTG
TTTGCAACAGAATCGCCAAACAAAATATAATCCAACCAAAACAGAAGCTA
AGATTGGGATTTGGATGTAAGGTAAGATTGATATCAATGATTTGGTTGCG
TCCTCTTGCTTTGTTGAAGGTAATGATGGcttttttgaaattatctttGG
GTCTGTAAAAAAGAaggtttttattattttcaaaaattttcaaagtactt
tttcaaagatAAAATCTTGTTCCACTAGATTGGGTGGTCTATATGCTggt
ctgccacccaaatctcctgaaagaggacagaaattctttgaatttcttca
catatatatattGATTGTAAATGCCACAAATCTTGCAGCTGCAAATTCTA
ATTGTTTAGAATACAATGAGATTATTTTTGTGTTATAAACAATCAACTGA
CCAAAATCTGATTAAAAGATAGCAAAAGTCTTTCGTTAAGAAAATTTTCT
AGACTAAGAAAGATTCAAGCAAAAATGAGAGAATTCATAGATTTTAGAAC
TTTCTAAGGGTAATAAACTTTCACACAAAAGCGGAGAAATCagcttttta
gaattttcggaGAATATCTTTTGTGAATTTACTTAAAACTTGTGATTTAC
CTAGCTGCTAAAGTTTTTTCCCATAAAAATAATGTCTAGCCTCTTTTACC
TTTGATGGAGATTTCCAATGTGGATGTCATTATTCCATCAACAGATGCAG
TTTCCACAACATCAATACTTCTTCTACCCATTTTCCTCATAGGATCCTCT
TTATCACATCCAAACCGACATTGATGATCAGTTGTGTTTTTGCAAACGTA
AGATTCACAATGGACGAAGATTCCATTATTACCATTGGTAAACGTGAAAG
CTTGGATACTGAATTGAAAGACATCTTTGGTGTATCGGTGCTGTTTGTAA
GTGTCGTCTTTTGGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049227-exon-scaffold_154-1491911889:494406..494626 | TCONS_00049227-exon-scaffold_154-1491911889:494406..494626 | Clytia hemisphaerica | exon |
| TCONS_00049227-exon-scaffold_154-1510915933:494406..494626 | TCONS_00049227-exon-scaffold_154-1510915933:494406..494626 | Clytia hemisphaerica | exon |
| TCONS_00049227-exon-scaffold_154-1575043694:494406..494626 | TCONS_00049227-exon-scaffold_154-1575043694:494406..494626 | Clytia hemisphaerica | exon |
| TCONS_00049227-exon-scaffold_154-1491911889:495250..495472 | TCONS_00049227-exon-scaffold_154-1491911889:495250..495472 | Clytia hemisphaerica | exon |
| TCONS_00049227-exon-scaffold_154-1510915933:495250..495472 | TCONS_00049227-exon-scaffold_154-1510915933:495250..495472 | Clytia hemisphaerica | exon |
| TCONS_00049227-exon-scaffold_154-1575043694:495250..495472 | TCONS_00049227-exon-scaffold_154-1575043694:495250..495472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:494406..495472 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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