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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049224 ID=TCONS_00049224|Name=TCONS_00049224|organism=Clytia hemisphaerica|type=transcript|length=1072bp
TATGCATGCTAGTCACTGACGAAGACGGTCATTATATTCATCCACATGCT
GTGGTTGACAAGAAAACTAAAACAGAAGTTGGCGCCCGGTGCTTTTGTGT
TCCGCCTCATTCTACCACCACCGTGgaTATTAAAGATCTTGCCATTCGtc
gaattttacaaaaatactttCGCTACTTTATCAAGAAACTCACGGACGAG
AACGACAACCTTTACACTGCAGAAGATATTTATCAAGTTTATGATTTCAA
ACATTCGATCGAAAGTCAACTCGATTTAGACAATTTACCAAAGGAAGCTC
ACAAGGGATATAAACAAGGCGGGAAACAAGGCAAAGAGAACAAAACTATC
CGAGAATTATGCAAACTGATCAGTTTAAAGGAAGTGTATTTGAAAATCGA
CATCTTTATTCTTCCTTCATCACCAGAAGAAAAGAACGTTCTATCGTTCC
CAAGACAAGATCAGTTGGAAATGCTGCGCGTGAATTATAGAAAATTAGCA
ACGCTCGCTCCCAAGCCTATTCGTGAACCGGGAAATTGGAAACCAGCCGA
CGAAGAAACGCCCATAAACAGTGTGCCAAACCATATCACGCCTAATGACC
GGAGTAATAACGCCCAGCCAAACTTGTTTCGACAAACTGGAGACGCAGAC
CAAAGCATTTCGTTAATCACTCCAGAAGTATCCCAAATGGTCACGGTGGA
AAATTCTGAAGTACCGAGAAACCCCTTCGGAGGCAACGGCATTCAGGTGT
TTGGCCAAAGTAATAACTATCCTAGCGCAAATGCTCTTTTCTCCCAAACA
TCTAACTCGATGGAAAAGCATAGGAAAGATCATACTTCACAATTCATGGT
CAACCCTCACTGGAATACACCAATAAACACATTTGATGGTTATGCTTTCA
CACCATCTCAAACACAAATCCCAAACAATCCAACATATTTTCAGACATAC
CAGAAAACGGAACTCAACCGACAAAGCATAGCTTTACGAGACACTGAGTT
TATGACTCAGACTCCAGCTATAACTGGATATGACACAGACTGTGTCCACC
CTATAACTAGTCCCATGACCGA Run BLAST on NCBI transcript from alignment at scaffold_154:449063..452467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049224 ID=TCONS_00049224|Name=TCONS_00049224|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at scaffold_154:449063..452467+ (Clytia hemisphaerica)
TATGCATGCTAGTCACTGACGAAGACGGTCATTATATTCATCCACATGCT
GTGGTTGACAAGAAAACTAAAACAGAAGTTGGCGCCCGGTGCTTTTGTGT
TCCGCCTCATTCTACCACCACCGTGgagtaagtttgaaaaactgTTTTCT
CCCAAGGTACATTTGGCTGTTTCATTTAATATCAAAGCAGGGAGTAGTAC
GAATCTTTCCAAcctaaaaaaatcttgaatttatgTGGATAatcctggaa
aatggcaaaattttcgaaaagctctctggaaaaataaaaattctgtTGAC
CATCGAAAAATTCTACTTTATACTCTAAGGTGAGGGTGGACGATCTAAAA
TCAAACGTTTACCCAGTTTTCAGAATAAGTTAAACCTCCTGGAAATTTAA
ATTACGTCACCGGAAATTTGTAAAAACTTCCTTCGAACTCTTGAAATATA
AACGAGCTAACCATAATGCTTAGTCATTCCTTGGAGGCATGGAAGCACTT
agcaaaaaaaactaaaatcaaacTGCCTtgtaaaatgcaaaaaaattccC
TTCTTTTTGGACCACCTGAAAATGTTTACACACCCAATGTATGAATATAA
AATGGAATTTCCCATGAAACTTGAAACGTCAACGCTACAAATAGGTGTGT
GTTTggtcgtcaatcagttttttcaaagtcaaaattatatcatttttcct
atcggaaacacccgaaaaatctggaagCAATGtgacctctgtttttctat
ttatagtaatacacaggggtcaaattccagtttttccagGTGTTTCGGAT
AGGAAAAAtgcatgacgtaatcttgacttatgcatatcaaaaattttttg
acaactgGTGGGTCATATCAAAGGGCCCCGGCttgagggctgaggtatat
ttgagtaaattgacaaagcccaccatggttgagcaacggagaaaattttt
gaattttgaagggttcaaagtgctattttaggacctatttcaattcaatt
tgaaaaataattcaaaaataatggaaatcctttaaaagtacaagcagctt
ttttggtaaaaacataAGGGGCCATGCCCCCTCTGGTCCCCCGTTGACGG
GTCCCATGagcattaattgtgaattagcgtgaatagttttcaaaagggga
aaGAGGAGGCGCAGCCATGGTTtgtgccgacgggagaaattttcaaccct
ctcatagcattcgactttattttgaagactagctagcaactaATAAAGAC
AATTGGAAACAAGCTACAAGCTAAAtatttcaaaccatctgattatctct
TTCAGGTGATCAAAAAAGTTTAGGGTTTTGATGGCTAAGCTGTGTAGAGA
TTAGTAAATATTTAGTAACATTCGCTTTTCATTATGATTAGAATAGGAGA
CTTTGTTTTACTCTCCAGTCaaaattcatatttcaaaacttctaAAATAA
GGTAAAGCATGTTGCTTTTCATGTGAACAGAAGATAACTTTTTTTCCCTT
TTATTTTTCAGTATTAAAGATCTTGCCATTCGtcgaattttacaaaaata
ctttCGCTACTTTATCAAGAAACTCACGGACGAGAACGACAACCTTTACA
CTGCAGAAGATATTTATCAAGTTTATGATTTCAAACATTCGATCGAAAGT
CAACTCGATTTAGACAATTTACCAAAGGAAGCTCACAAGGGATATAAACA
AGGCGGGAAACAAGGCAAAGAGAACAAAAGTGAGTTTCACCGATTTGTGT
AATTGAAATATCTGGGTGTTCCTAACAATTTTCTGGTATATATATGATTA
TCCTCCACCTCTAGGCAAAACGCactgtcgaatatttttagatatccgat
agcaaaatatctcctctgtagcagcgagcataaagaaaatagtttattga
tcaaataattatttaaatgtcACATATATAAAAACAGATAAACAGAAAGG
TCTTTTTAACAAAAGGGAaaggaaattcgaacgttttgtaattaattttg
atttttcttatcgaaaatctgCTTAATATTCCCCCAAATAGTTCACTTCA
TACCAGTATATGATTATTCGTCTATCTGCCCTTGTTTGGTAATGAGATGT
TCCATTTAATATCCATACACAGCCAGTGATTCTTTTAAGCACTTTGAGCG
GGGCCGTTTTTGTAAACTTAGATTGCATCTCTAATATGCCTGAAAGGGAA
CTTGCTCAGCAAAGCTGTATATTTGTGAAGCTGGGGGTCTTGTGGTTGTT
CAGAGGGCGAAGCTCTCAATAACTTTTGTATATGTAGATAACAATTAGTT
ATTGTTGCtcataaacaacaaaatagATTAATTTCgttaaaaaaatctca
tttattttggattgagtttcaaaactcaATCTTAGAAAGGTGGATTCGAG
ccgaaaaaaattcttcaatttttttggatATCCCCTGGATAGAATCTTGC
AAAAGGCCCCTCGAAAAGGGATAATtgttcttggaaaaattctgtTTTAC
ACCGTAAAGTGAGGATACAACTATAATCTTTTGCCCCTTTGAAATTTGAG
AATCGACTTTTATTCAGGGGTATTCCTTAGAAATTTAAATCAGGTCCCTT
CTCAAAAACTTTTATGGAACTTAAATATGAAGGAACATATCATTTCAcag
ttttaaaaacttttttcttcctttataGCTATCCGAGAATTATGCAAACT
GATCAGTTTAAAGGAAGTGTATTTGAAAATCGACATCTTTATTCTTCCTT
CATCACCAGAAGAAAAGAACGTTCTATCGTTCCCAAGACAAGATCAGTTG
GAAATGCTGCGCGTGAATTATAGAAAATTAGCAACGCTCGCTCCCAAGCC
TATTCGTGAACCGGGAAATTGGAAACCAGCCGACGAAGAAACGCCCATAA
ACAGTGTGCCAAACCATATCACGCCTAATGACCGGAGTAATAACGCCCAG
CCAAACTTGTTTCGACAAACTGGAGACGCAGACCAAAGCATTTCGTTAAT
CACTCCAGAAGTATCCCAAATGGTCACGGTGGAAAATTCTGAAGTACCGA
GAAACCCCTTCGGAGGCAACGGCATTCAGGTGTTTGGCCAAAGTAATAAC
TATCCTAGCGCAAATGCTCTTTTCTCCCAAACATCTAACTCGATGGAAAA
GCATAGGAAAGATCATACTTCACAATTCATGGTCAACCCTCACTGGAATA
CACCAATAAACACATTTGATGGTTATGCTTTCACACCATCTCAAACACAA
ATCCCAAACAATCCAACATATTTTCAGACATACCAGAAAACGGAACTCAA
CCGACAAAGCATAGCTTTACGAGACACTGAGTTTATGACTCAGACTCCAG
CTATAACTGGATATGACACAGACTGTGTCCACCCTATAACTAGTCCCATG
ACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049224-exon-scaffold_154-1491911889:449063..449189 | TCONS_00049224-exon-scaffold_154-1491911889:449063..449189 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1510915933:449063..449189 | TCONS_00049224-exon-scaffold_154-1510915933:449063..449189 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1575043694:449063..449189 | TCONS_00049224-exon-scaffold_154-1575043694:449063..449189 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1491911889:450574..450791 | TCONS_00049224-exon-scaffold_154-1491911889:450574..450791 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1510915933:450574..450791 | TCONS_00049224-exon-scaffold_154-1510915933:450574..450791 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1575043694:450574..450791 | TCONS_00049224-exon-scaffold_154-1575043694:450574..450791 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1491911889:451741..452467 | TCONS_00049224-exon-scaffold_154-1491911889:451741..452467 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1510915933:451741..452467 | TCONS_00049224-exon-scaffold_154-1510915933:451741..452467 | Clytia hemisphaerica | exon |
| TCONS_00049224-exon-scaffold_154-1575043694:451741..452467 | TCONS_00049224-exon-scaffold_154-1575043694:451741..452467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:449063..452467 + |
Blast
The following BLAST results are available for this feature:
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