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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049215 ID=TCONS_00049215|Name=TCONS_00049215|organism=Clytia hemisphaerica|type=transcript|length=1374bp
GAAATTTTCACCTTTGAGGGTCTTTCGCTAAAATTTAGTCATTTAAAGGA
TCAGACTTCAGATGTCCGGTTAGCACCATACTTGACATTCTCCGAACCCT
GGTGATGATGGTTGGGTTGAGGTGGAGGAGAGGTATCTCTACAAAAAGCC
AtggttaaattattttcaattgcaGTATTAACGTTTCTTATGGTCTTATC
AGTGGATGGAACTAAAAAAGGAAGCGATGGAAACAAGAATGGCCCACAAC
ATCCTATTTGTCAAGTACTTCCACCAACCCAATTACGAAGATTTTTGGGC
AAAGGTCGTATCAAAAATGGGAAAGTAATGAGGTTTGGTATGGGAAAGAA
GACAATCTGCATGATCTGCAAAGATGGTAATTTATTGCCAGTCAAATGCA
AGATGACCAAAGAACAACGATGGTACAATAAGAAGAATCAATAGAAACAT
AGATATTAACACCAAATGTAGACCGGCTTTATATCACGCGGGACATATCA
ACAAGAGTTATCAATAATTTCAACTgtctttattttcaataaagatTTTA
CACAGTATAATTTCTTTCTTCtcaattttgatataaaatttcgtcacttt
tgatttaaaaaataaatatgctacTGTAATCCTTAAAAGTTAATTTCTAC
ATACAATACAATTGTGCACCAGGTGAATTATGAAAATTAATGTCagcgaa
aaaaaaactttagagGCAAAGCTTATTTGTATCAACGCTTTGGTTGAGAC
ATATACATTCTTCTCcagatgaaaataataaaaacatcGATATACATCTT
GCAAGTAAACACAGCCCTGTGTCACGGTCTTAGTGGGACAGGACCCGGCc
cattggaaaatttggccGAGATTTCGTCCCGGAGGGAAAATACtcaaatt
gactttgttttatACCCATTTAATaaatcaatagaccttttcataaatta
cgtcacgaacatcacttgcctcgttttgaagttattgccaaggtgattaa
ctcccagcggattttatttgaactactttctatttttgaaaaatcattta
atgtctcaagggacataatcaccatggtaattgtttgaatacgaggcaag
tgatgttcgtgacgtaatttatgaaaaggtctattggaaaaaaattgcat
AGCAAAACACATGAAAACCATAGCATTTTtaagatttcgatagaaatttt
catcctcaCTCTGGGAAGAAGTTCCATCGGGGCTGTGTGATGGAGGTATG
TAAATCTGTAAACAGAATCATTACTTGAGCTCCAGGTTGTGGGGAAAAAA
CGAGACTAAAAATCAGACCACGCAACACTTCCACTGAGCACTCTTTGTCC
AATCAACACTTTGACTTGGTTTGA Run BLAST on NCBI transcript from alignment at scaffold_154:211020..217821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049215 ID=TCONS_00049215|Name=TCONS_00049215|organism=Clytia hemisphaerica|type=transcript|length=6802bp|location=Sequence derived from alignment at scaffold_154:211020..217821+ (Clytia hemisphaerica)
GAAATTTTCACCTTTGAGGGTCTTTCGCTAAAATTTAGTCATTTAAAGGA
TCAGACTTCAGATGTCCGGTTAGCACCATACTTGACATTCTCCGAACCCT
GGTGATGATGGTTGGGTTGAGGTGGAGGAGAGGTGAAGGAATTCGTATGG
CTTGGTTACCTGATTGGTTaatattttactgaccagaatGTGAACATTGC
TTAGATGTAACGAAAATATGGcgataaaaaattgtttcaagTTGATATTt
ggtactttacagaccagTTCTATAAAATACCTATTCGAATTTTCAGAAAC
ACGGGACCTATACTTTGGTATTTGAGTTANAGTTGATATTtggtacttta
cagaccagTTCTATAAAATACCTATTCGAATTTTCAGAAACACGGGACCA
ATACTTTGGTATTTGAGTTAAAATTTGGACTACATATGGCAAGAGTAAGT
GCAAAATCTAGATAAGTACTTAACAGACCTGCCAGTATTGAAGGAAGTTG
CTTGTTTTCCTTAGGCCTAGCGGAACAATCGTAAAAGTGAgaaggctgaa
ggctcaaattgacataaaattcgctaggaatttgagaaaaaaaaatctca
tttgctcaaaattgAGGAGGTTGAAGGCTCAAATagagataaaattcgct
aggaatttgaaaaaaaaaaatctcatttgctcaaaagtgagGAGGTTGAA
GTCTCCCAGTCTCCCCACTTCCGTCAGGCCTGTTCCTAAATAACCATTGG
TTTTTTTCCTATTTAAGTGCTGTGAAATTGACAGCGAGCTTTTATCACCA
ATACCGATAACACTTGAATTGAAGACCGAACTTGTTTTTCTTAAACCCAT
CAAGAGAGGCTCAAGATTGTTTTTCCGCATTTATGGATCGATTTCAACAG
TTACTGCGTCGGCGTTCAACAAATATTTATTCACATAATATCGTTGTCTT
TCCAGATAACAATAATAGTCTTATTACCACTTTCCATTTTCGTCATACAT
AAGGGCTACTTAATATATTGTGTAGCATACACTACACATTTATAGTCCTA
TAGTTATGTACTCGAAAATAGTACTTAGCTCGCATGTTGAATGACGAAAA
AAGAAAGggtttattattgttttttgattttctctacTTAGTCATCGAAA
CATTGCTATTTAATATTTAAGTGCCATTGTCGggtatatcagacatgggc
tatgtaggagggcgaagccctgctgtaatgcccagtttgagttagaaatc
gtcatttttggtctaactcgttgAAATAGGCTTCAttgttaagcaaaaaa
aatcaaaagtgagtctttccagcgatattttaagccaaaaaatcaaaaga
atgcaaaaattggacaaaaatccacttttttgagattttgaacGTTTTTG
ACCGTATTGGTCAACGgtgagtgatccaagaacctccaaaatgGGGGAGG
GGGGAGGCGCgaacggggtttgcgatttccaaaataccgaataattttgc
caaaatttccgaattTCCGTAAAAacatacttgcaattccgagaccgatt
ttttgggtatttttcctcgttttgactaatttttcatcaaatttgatttt
tcatgtatgaataccgaaaaagggggataaaaactttataataccgaaat
ttcaaagcaaaaattcatggatttccgataccgaaacaattgcagaattc
cgaaataccgaaggaattttgaccgatttccgaagaaaaaagggtcgatt
tccgcccCCACCAAAATTGGCCCTGCTTTACCTGATTCTGTCCTCTAGTA
AatgaatttgaagttttaccactggtcACCTTTCcgtcattcaggcaggt
ccgcgcAGAGTAATGTCCGTCGGGATAATGTCTGCCGGGGGAAACATCGT
CTAGGTATAGTCGTACAAAGTACAAAAACAGTAGTACAAAAACGAATGAG
GGAGAATCGTCCATTCGATAGCCGTTCGTCGGAGAAAAACTCGTTTGGGA
AAAGTCGAGTTCTATGAGTTCTCTACAGGTGGTtcacaaatattttttgt
gttttgagcCATGGAAAATGGCCATTTATTTGGCCATAATAAAACCGTTT
CATGTATAGAAAATGTATTTTCGTAAACATATGTGTCCTTTGAGAATTTA
ATTTGCTGCCAATCTCGGTTTGAAATCTTTCAACCCGACTAGACAGGAAT
TGCCTCTTCACGTGTCCTCAAAGAAAGTACTTTTCaactttaagggaaga
aaagCAAAGTGCAAACAGTGCATTGTTGTACACCAaagtatatttttcat
tttaatgatCAAATGCCTGCTGTAATAGAGCGTCCCCCAGTATAACGCCA
TaacaccaaaaaaaattcttttatcaatcacttatCACGCTTTTTGGAAT
CATAGTTCACATCATCACGCCAAAAAAGGCCCAGTCACAAcgtcacgcaa
accgctggggggacTCTGTATTAGAAAAACGGATCTCGATCGTCTCTCAC
AAGCAAAATGTTAGGATTGAGAATATAAACAAAGCAATTACTTACGTACA
ACAACCATTAGCTTAATTTGATTCCATCTGTTGGGCCACCACATGCGTCT
TCTGATGAAACAGCGTATATCTCTTTCACAACCTTTACGTAGAAATATAC
AAAgctattttaaaaactttacagcTCGGACTTGGTGTCAGGTGCGAGCG
CAAGGGTATCGAACGTACGCCATTTTTCAGAAAGAGTACCACAGAACCGC
AGAATGATACAAAAATAAAGTCCTTCTCGGGGATGACTTAAGCCTCAACT
TTGGTGCCACAGCTTCCGTGAATCTCACGATATGGAAAGAAATTAAGAGG
GTTTCTGCTGACGAAAAGGCTTCTTATAGGAACTCTAGGAAGTATAGAGG
TCTGCAAATCAATCTATGAATTAAGTTGGTTCATTTCCTGAACCAAGAGC
TTAAAGTTTGATGTTACATCCTTACATGGATGGGAATTATGCACCAGCTT
CTCTGAAATCTAGTAGGCcaatacaaaaataaacatcAGACCAGAAATTT
CGTGATTCGAGAAGAAAGTGTAAGCTGACGAGCTTTTTATCTCCGgagat
ggggggggggggtcacttAAATTAGGCCTATAAAATCGGAGCCTTACAGA
GCAGAGAGAATTTAACCAAATTTGAGTAAAATCAGCCCTTATTAAGGTGC
ATTTTCTTGCTATTCACGTATGAAATATAATTCTACCTAAAGTTAGTTAG
TTATattaaacaaaatcaaattaaatattttaacACTAGCTTAAGAATAT
CATGAATGTTTGCTTTTcagttaaatgaaaaaaaaagaaatctaaagATT
TCGCTTAGTTTTGTGAAAAACATGTGTATAAATCACACAAGCTAACGGTA
gtgaaaattaaatgaaatataTATATGTTCCGTTCAtcgatattttatta
ttttgaaaattcaagattgggctcttccagaaaaaatccgttcattgGGT
GGATGATTATTATTTCTTtaatgaattacccctggacattttcatttttc
accccatggacatggGTTTTACCCATTGATTGACAATTATcaatttaacc
ccctggacaccaAAATTTACTCTTGGACATCGCAGATTTATCCCCTGGAC
AATGCATTTTTTAGGACTTTTTTCGggacccctggacaattcatcttcca
cccccccccctatgAACGGATTTCTTTTCTGGAAGAGCTCATTTCTTTCC
TATAAAGGCATCATTATTATCTACGTTTTTTAATTATATCTTTGGTTTAT
AGGTATCTCTACAAAAAGCCAtggttaaattattttcaattgcaGTATTA
ACGTTTCTTATGGTCTTATCAGTGGATGGAACTAAAAAAGGAAGCGATGG
AAACAAGAATGGCCCACAACATCCTATTTGTCAAGGTACacgaatttcaa
atttcaaaaattttgatttagtgCAGTCAAATCTAaccttttttgtcatt
ctaagAAGATTGTTGGTCCCTTTTAAGGTCCAATTTGGAGAGAATCAAAA
ATCCATATTAATTGAGAATGTGTCCATTATAATACATCTATTACAAGGGG
TACAAGAACCATATTTTCTATCATGTGGAAACCATGCCATCGTTATTGAC
TTATATTCTCTTGAGGAGTGGTTTCTACACTACAAAAAtgagtgcacact
taaagctttttcaaTGTACCTGATATGAGCAAAATATCACGCCGTCTTTA
CAAGCAAACCACAtttcggtgccggcaatttgatcaataAAGTCCATTCT
CTTGCCTCCTTGTTTCCAACTGTGCCAGTTATTTGTTctggttaaaaaaa
ttgccggtaccgaGCTCTGGTCTACTAATGTGATCTACTCAGCACAAATG
GCTAGAACTGCCGAGGAAAGACAGTAGCTCCTCTAGTGTTTGAGATATTT
GTGCTATGAAATAGGGGTGTTAAATAAGTTAGAGCTCCCAATATAGATGT
CCATCTCACTTTTTGAATCATTCGACACTGTCTTCAACCCATGTTCAGAT
GTCAGATTTTAGCCTGTAATTTTTTCATTGCCATTCTAATATTTAGTACT
TCCACCAACCCAATTACGAAGATTTTTGGGCAAAGGTCGTATCAAAAATG
GGAAAGTAATGAGGTTTGGTATGGGAAAGAAGACAATCTGCATGATCTGC
AAAGATGGTGAGTGAAAACTTATAACCTTCAAGCCACCAGGAATAATAGG
TTTGATAGTAGCccagggtccacttaaagctttttttatagactgaaCGG
CGCGACTAAGTGGCTCAGTAATATACGGTAATTTGCTTTTGCTTAGATGC
ACTGTAaaccagattttagttgtttttggaaggtaaaaatagTATGAGGC
Aacgtttttatttgagaataagggattgcaaatctgttattgatgtttgt
ttctcatttttgattatatctttcaactccaagtaattttattgttattt
ggatttttaacattttctctcaaaatggcaacctcgccaaacgctcctag
tctacttcactggactcagcgtcaaaTTTTAGTTTGATAGGAGGTGATGG
GTACGACAGAGCAAAAATTCGGGACAAAATTTGATCCCTTTATAGTCAAG
ttaatacatatttttttagtttttggccgaaaatttctaatttcctACAG
AAAATGTATGCTcttttgagagaattttttagcttttgatCAGTAACTAT
AAAGTTGATTCTGGGTATCTTATGAGTTGTTAAAAGATTCTAGATCTGTT
GAAGAAGATACTTAACCTATATTCTTGCATCCACCCTCACTTCCCGGAAA
CACCACTATTCATGAATCGGTCAAATATATTGCTGATAGAgtgaactctc
tctaattcgaacctctattattcgaatctttctgtagttCGAATAATAGT
ATTTCATCCCCTCAGATTGAGAGTCTTATAAAacactctctgtaattcga
agaaagttttttgtcccttgaagatcgaattacagaaaattataacaaaa
tCTTCNAATTcgaagaaagttttttgtcccttgaagatcgaattacagaa
agtcaACTTTATAACAAAATCTtcggacgagatggagtttttacaagctc
ttatttgatttggttggtcgttaaccagtaataaaacaattttgttactt
tttctaaagaacgcatcatGTCTATtatacttcaaatgaccaattattaa
agtatcttaaaaacttcatctcatctgaaaatcttcatttctttcatttc
aaaGGTAATTTATTGCCAGTCAAATGCAAGATGACCAAAGAACAACGATG
GTACAATAAGAAGAATCAATAGAAACATAGATATTAACACCAAATGTAGA
CCGGCTTTATATCACGCGGGACATATCAACAAGAGTTATCAATAATTTCA
ACTgtctttattttcaataaagatTTTACACAGTATAATTTCTTTCTTCt
caattttgatataaaatttcgtcacttttgatttaaaaaataaatatgct
acTGTAATCCTTAAAAGTTAATTTCTACATACAATACAATTGTGCACCAG
GTGAATTATGAAAATTAATGTCagcgaaaaaaaaactttagagGCAAAGC
TTATTTGTATCAACGCTTTGGTTGAGACATATACATTCTTCTCcagatga
aaataataaaaacatcGATATACATCTTGCAAGTAAACACAGCCCTGTGT
CACGGTCTTAGTGGGACAGGACCCGGCccattggaaaatttggccGAGAT
TTCGTCCCGGAGGGAAAATACtcaaattgactttgttttatACCCATTTA
ATaaatcaatagaccttttcataaattacgtcacgaacatcacttgcctc
gttttgaagttattgccaaggtgattaactcccagcggattttatttgaa
ctactttctatttttgaaaaatcatttaatgtctcaagggacataatcac
catggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaatttat
gaaaaggtctattggaaaaaaattgcatAGCAAAACACATGAAAACCATA
GCATTTTtaagatttcgatagaaattttcatcctcaCTCTGGGAAGAAGT
TCCATCGGGGCTGTGTGATGGAGGTATGTAAATCTGTAAACAGAATCATT
ACTTGAGCTCCAGGTTGTGGGGAAAAAACGAGACTAAAAATCAGACCACG
CAACACTTCCACTGAGCACTCTTTGTCCAATCAACACTTTGACTTGGTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049215-exon-scaffold_154-1491911889:211020..211151 | TCONS_00049215-exon-scaffold_154-1491911889:211020..211151 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1510915933:211020..211151 | TCONS_00049215-exon-scaffold_154-1510915933:211020..211151 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1575043694:211020..211151 | TCONS_00049215-exon-scaffold_154-1575043694:211020..211151 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1491911889:214822..214954 | TCONS_00049215-exon-scaffold_154-1491911889:214822..214954 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1510915933:214822..214954 | TCONS_00049215-exon-scaffold_154-1510915933:214822..214954 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1575043694:214822..214954 | TCONS_00049215-exon-scaffold_154-1575043694:214822..214954 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1491911889:215616..215726 | TCONS_00049215-exon-scaffold_154-1491911889:215616..215726 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1510915933:215616..215726 | TCONS_00049215-exon-scaffold_154-1510915933:215616..215726 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1575043694:215616..215726 | TCONS_00049215-exon-scaffold_154-1575043694:215616..215726 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1491911889:216824..217821 | TCONS_00049215-exon-scaffold_154-1491911889:216824..217821 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1510915933:216824..217821 | TCONS_00049215-exon-scaffold_154-1510915933:216824..217821 | Clytia hemisphaerica | exon |
| TCONS_00049215-exon-scaffold_154-1575043694:216824..217821 | TCONS_00049215-exon-scaffold_154-1575043694:216824..217821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:211020..217821 + |
Blast
The following BLAST results are available for this feature:
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