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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049209 ID=TCONS_00049209|Name=TCONS_00049209|organism=Clytia hemisphaerica|type=transcript|length=1627bp
CGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGCTTACTTTG
ATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTGTTGGTCTT
GGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGACCAGTCAG
CTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATATAGCCCACTAG
AACGTGAGTGTCTTGCAGTTACTTATGCCCTCGAACGTTTTCGATTATAC
CTCTACGGACTTTATTTTACTATTAAAACTGATCACAAACCACTGGTACC
CATTTTCTCATCCCCAATGAAATCAATCACACCCCGCATTGAAAATCTTG
TTATCAAAGCCATGCCATACAATTCAAAATTGTATATCAGCCGGATAAAT
TCAGTGGAGCTGATTATTTATCCCGATCTAATCATGATAAACATATAACT
GTTAAACGTAATGTGACAGAGGATTTTGTTATAATTATGTGTATGAACAT
ACCTTACCACAATCTGTTTCAGCTGAAACCATTGCTCACGAGCAACACAG
GGACCCAGACGTCAAGAGTATCATAGATTTCATCACTAACGATAAAATGT
CACCAAATTGCCAGTACTTCACTATGCTTCACAGTTTCTCCATTGTCAAC
AACGTTGTCATGTTCAATGACAGAATCTTCATTCCAAAATCGTTAAGGCA
ACACATCATTCAAATCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCA
AGCAAAGATTGCGTGTTAAGACATGGTGGCCAGGAATTGGTTCTGATGTT
GAAGAATTTATCAAATCATGCCATGGATGCCAAGTAGTTGGACCGCTACC
CAAACCAACTCCGCTGGCAACAACAAAAATTCCAGATAAATAGTGGTTAC
TGCTCGGATGTGATCTTGTTGGACCGTTCCCAACAGGTGAAAACCTTCTC
GTTTGTGTAGATTATTATTCAAAATACCCAGAAGTGGAATTACTTCACAA
CGTTTCGTCAAAGTCCATTGCTACgaaattaagaaaattgttTTGTAGAT
ATGGTGCACGGGATTGTATTGTTACCGACAACGGTCCTCATTTTCGGAAA
CACACTGAATTTCGGAAACTATTGAAGGAATTTAATGTTAAGCATCGCAA
AGTCACACCCTATCATCCGATGGCCAACGGGGAAGTTGAACGATTCAACC
GAAACCTTAAGAAAACGATTCAAGCATCAATCGCAGAAGGACAGAACTGG
AGACAAGCACTTGATAACTTCCTCCTGTCCTACCGCACCACGCCACATGC
CACAACCGGCAAAACTCCAGCAGAGCTTATGTTTGGACGAGTAATTCGCG
ACAAAATCCCAAACAACAAGAAATCAAAACCGTCCGCATCCAGCAAATTG
GTCTGTCAACgggatcaaaacaaaaagattcttGTCAGACAATGCTTTTA
CTCTTATTTCTGAACATAACATGTATGCTGCTTACATGAAAAAATCTGCA
ATCTTGTTGAAAAATTGCAATTccttctattttttcaaaattccagacaG
CCTTTaggttttcaaataaagcagcatgtgatagattgtagcctaatctt
accctgggtttactaaaaaaaccgcga Run BLAST on NCBI transcript from alignment at scaffold_154:30405..32031+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049209 ID=TCONS_00049209|Name=TCONS_00049209|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at scaffold_154:30405..32031+ (Clytia hemisphaerica)
CGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGCTTACTTTG
ATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTGTTGGTCTT
GGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGACCAGTCAG
CTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATATAGCCCACTAG
AACGTGAGTGTCTTGCAGTTACTTATGCCCTCGAACGTTTTCGATTATAC
CTCTACGGACTTTATTTTACTATTAAAACTGATCACAAACCACTGGTACC
CATTTTCTCATCCCCAATGAAATCAATCACACCCCGCATTGAAAATCTTG
TTATCAAAGCCATGCCATACAATTCAAAATTGTATATCAGCCGGATAAAT
TCAGTGGAGCTGATTATTTATCCCGATCTAATCATGATAAACATATAACT
GTTAAACGTAATGTGACAGAGGATTTTGTTATAATTATGTGTATGAACAT
ACCTTACCACAATCTGTTTCAGCTGAAACCATTGCTCACGAGCAACACAG
GGACCCAGACGTCAAGAGTATCATAGATTTCATCACTAACGATAAAATGT
CACCAAATTGCCAGTACTTCACTATGCTTCACAGTTTCTCCATTGTCAAC
AACGTTGTCATGTTCAATGACAGAATCTTCATTCCAAAATCGTTAAGGCA
ACACATCATTCAAATCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCA
AGCAAAGATTGCGTGTTAAGACATGGTGGCCAGGAATTGGTTCTGATGTT
GAAGAATTTATCAAATCATGCCATGGATGCCAAGTAGTTGGACCGCTACC
CAAACCAACTCCGCTGGCAACAACAAAAATTCCAGATAAATAGTGGTTAC
TGCTCGGATGTGATCTTGTTGGACCGTTCCCAACAGGTGAAAACCTTCTC
GTTTGTGTAGATTATTATTCAAAATACCCAGAAGTGGAATTACTTCACAA
CGTTTCGTCAAAGTCCATTGCTACgaaattaagaaaattgttTTGTAGAT
ATGGTGCACGGGATTGTATTGTTACCGACAACGGTCCTCATTTTCGGAAA
CACACTGAATTTCGGAAACTATTGAAGGAATTTAATGTTAAGCATCGCAA
AGTCACACCCTATCATCCGATGGCCAACGGGGAAGTTGAACGATTCAACC
GAAACCTTAAGAAAACGATTCAAGCATCAATCGCAGAAGGACAGAACTGG
AGACAAGCACTTGATAACTTCCTCCTGTCCTACCGCACCACGCCACATGC
CACAACCGGCAAAACTCCAGCAGAGCTTATGTTTGGACGAGTAATTCGCG
ACAAAATCCCAAACAACAAGAAATCAAAACCGTCCGCATCCAGCAAATTG
GTCTGTCAACgggatcaaaacaaaaagattcttGTCAGACAATGCTTTTA
CTCTTATTTCTGAACATAACATGTATGCTGCTTACATGAAAAAATCTGCA
ATCTTGTTGAAAAATTGCAATTccttctattttttcaaaattccagacaG
CCTTTaggttttcaaataaagcagcatgtgatagattgtagcctaatctt
accctgggtttactaaaaaaaccgcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049209-exon-scaffold_154-1491911889:30405..32031 | TCONS_00049209-exon-scaffold_154-1491911889:30405..32031 | Clytia hemisphaerica | exon |
| TCONS_00049209-exon-scaffold_154-1510915933:30405..32031 | TCONS_00049209-exon-scaffold_154-1510915933:30405..32031 | Clytia hemisphaerica | exon |
| TCONS_00049209-exon-scaffold_154-1575043694:30405..32031 | TCONS_00049209-exon-scaffold_154-1575043694:30405..32031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:30405..32031 + |
Blast
The following BLAST results are available for this feature:
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