|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049208 ID=TCONS_00049208|Name=TCONS_00049208|organism=Clytia hemisphaerica|type=transcript|length=1131bp
AAGTACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTG
CTTACTTTGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGT
GTTGGTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAG
ACCAGTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATATA
GCCCACTAGAACCTGAAACCATTGCTCACGAGCAACACAGGGACCCAGAC
GTCAAGAGTATCATAGATTTCATCACTAACGATAAAATGTCACCAAATTG
CCAGTACTTCACTATGCTTCACAGTTTCTCCATTGTCAACAACGTTGTCA
TGTTCAATGACAGAATCTTCATTCCAAAATCGTTAAGGCAACACATCATT
CAAATCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCAAGCAAAGATT
GCGTGTTAAGACATGGTGGCCAGGAATTGGTTCTGATGTTGAAGAATTTA
TCAAATCATGCCATGGATGCCAAGTAGTTGGACCGCTACCCAAACCAACT
CCGCTGGCAACAACAAAAATTCCAGATAAATAGTGGTTACTGCTCGGATG
TGATCTTGTTGGACCGTTCCCAACAGGTGAAAACCTTCTCGTTTGTGTAG
ATTATTATTCAAAATACCCAGAAGTGGAATTACTTCACAACGTTTCGTCA
AAGTCCATTGCTACgaaattaagaaaattgttTTGTAGATATGGTGCACG
GGATTGTATTGTTACCGACAACGGTCCTCATTTTCGGAAACACACTGAAT
TTCGGAAACTATTGAAGGAATTTAATGTTAAGCATCGCAAAGTCACACCC
TATCATCCGATGGCCAACGGGGAAGTTGAACGATTCAACCGAAACCTTAA
GAAAACGATTCAAGCATCAATCGCAGAAGGACAGAACTGGAGACAAGCAC
TTGATAACTTCCTCCTGTCCTACCGCACCACGCCACATGCCACAACCGGC
AAAACTCCAGCAGAGCTTATGTTTGGACGAGTAATTCGCGACAAAATCCC
AAACAACAAGAAATCAAAACCGTCCGCATCCAGCAAATTGGTCTGTCAAC
gggatcaaaacaaaaagattcttGTCAGACA Run BLAST on NCBI protein sequence of TCONS_00049208-protein >TCONS_00049208-protein ID=TCONS_00049208-protein|Name=TCONS_00049208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
STFDSLKELLLDSETLAYFDVNAETEISTDASCVGLGAVLMQKQKNGTWR
PVSYASRSLSPVERRYSPLEPETIAHEQHRDPDVKSIIDFITNDKMSPNC
QYFTMLHSFSIVNNVVMFNDRIFIPKSLRQHIIQIAHEGHQGIVRTKQRL
RVKTWWPGIGSDVEEFIKSCHGCQVVGPLPKPTPLATTKIPDK Run BLAST on NCBI transcript from alignment at scaffold_154:30396..31845+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049208 ID=TCONS_00049208|Name=TCONS_00049208|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at scaffold_154:30396..31845+ (Clytia hemisphaerica)
AAGTACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTG
CTTACTTTGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGT
GTTGGTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAG
ACCAGTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATATA
GCCCACTAGAACGTGAGTGTCTTGCAGTTACTTATGCCCTCGAACGTTTT
CGATTATACCTCTACGGACTTTATTTTACTATTAAAACTGATCACAAACC
ACTGGTACCCATTTTCTCATCCCCAATGAAATCAATCACACCCCGCATTG
AAAATCTTGTTATCAAAGCCATGCCATACAATTCAAAATTGTATATCAGC
CGGATAAATTCAGTGGAGCTGATTATTTATCCCGATCTAATCATGATAAA
CATATAACTGTTAAACGTAATGTGACAGAGGATTTTGTTATAATTATGTG
TATGAACATACCTTACCACAATCTGTTTCAGCTGAAACCATTGCTCACGA
GCAACACAGGGACCCAGACGTCAAGAGTATCATAGATTTCATCACTAACG
ATAAAATGTCACCAAATTGCCAGTACTTCACTATGCTTCACAGTTTCTCC
ATTGTCAACAACGTTGTCATGTTCAATGACAGAATCTTCATTCCAAAATC
GTTAAGGCAACACATCATTCAAATCGCTCACGAGGGCCACCAGGGTATCG
TTCGTACCAAGCAAAGATTGCGTGTTAAGACATGGTGGCCAGGAATTGGT
TCTGATGTTGAAGAATTTATCAAATCATGCCATGGATGCCAAGTAGTTGG
ACCGCTACCCAAACCAACTCCGCTGGCAACAACAAAAATTCCAGATAAAT
AGTGGTTACTGCTCGGATGTGATCTTGTTGGACCGTTCCCAACAGGTGAA
AACCTTCTCGTTTGTGTAGATTATTATTCAAAATACCCAGAAGTGGAATT
ACTTCACAACGTTTCGTCAAAGTCCATTGCTACgaaattaagaaaattgt
tTTGTAGATATGGTGCACGGGATTGTATTGTTACCGACAACGGTCCTCAT
TTTCGGAAACACACTGAATTTCGGAAACTATTGAAGGAATTTAATGTTAA
GCATCGCAAAGTCACACCCTATCATCCGATGGCCAACGGGGAAGTTGAAC
GATTCAACCGAAACCTTAAGAAAACGATTCAAGCATCAATCGCAGAAGGA
CAGAACTGGAGACAAGCACTTGATAACTTCCTCCTGTCCTACCGCACCAC
GCCACATGCCACAACCGGCAAAACTCCAGCAGAGCTTATGTTTGGACGAG
TAATTCGCGACAAAATCCCAAACAACAAGAAATCAAAACCGTCCGCATCC
AGCAAATTGGTCTGTCAACgggatcaaaacaaaaagattcttGTCAGACA
Coding sequence (CDS) from alignment at scaffold_154:30396..31845+ >TCONS_00049208 ID=TCONS_00049208|Name=TCONS_00049208|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_154:30396..31845+ (Clytia hemisphaerica)
AGTACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGC
TTACTTTGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTG
TTGGTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGA
CCAGTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATATAG
CCCACTAGAACCTGAAACCATTGCTCACGAGCAACACAGGGACCCAGACG
TCAAGAGTATCATAGATTTCATCACTAACGATAAAATGTCACCAAATTGC
CAGTACTTCACTATGCTTCACAGTTTCTCCATTGTCAACAACGTTGTCAT
GTTCAATGACAGAATCTTCATTCCAAAATCGTTAAGGCAACACATCATTC
AAATCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCAAGCAAAGATTG
CGTGTTAAGACATGGTGGCCAGGAATTGGTTCTGATGTTGAAGAATTTAT
CAAATCATGCCATGGATGCCAAGTAGTTGGACCGCTACCCAAACCAACTC
CGCTGGCAACAACAAAAATTCCAGATAAATAGAGTACATTCGACAGTTTG
AAGGAACTTTTACTTGACAGTGAAACACTTGCTTACTTTGATGTGAATGC
AGAGACAGAAATATCAACTGATGCTTCTTGTGTTGGTCTTGGTGCAGTCC
TCATGCAGAAACAGAAGAATGGGACATGGAGACCAGTCAGCTATGCAAGT
AGATCATTATCACCAGTGGAGAGAAGATATAGCCCACTAGAACCTGAAAC
CATTGCTCACGAGCAACACAGGGACCCAGACGTCAAGAGTATCATAGATT
TCATCACTAACGATAAAATGTCACCAAATTGCCAGTACTTCACTATGCTT
CACAGTTTCTCCATTGTCAACAACGTTGTCATGTTCAATGACAGAATCTT
CATTCCAAAATCGTTAAGGCAACACATCATTCAAATCGCTCACGAGGGCC
ACCAGGGTATCGTTCGTACCAAGCAAAGATTGCGTGTTAAGACATGGTGG
CCAGGAATTGGTTCTGATGTTGAAGAATTTATCAAATCATGCCATGGATG
CCAAGTAGTTGGACCGCTACCCAAACCAACTCCGCTGGCAACAACAAAAA
TTCCAGATAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049208-exon-scaffold_154-1491911889:30396..30607 | TCONS_00049208-exon-scaffold_154-1491911889:30396..30607 | Clytia hemisphaerica | exon |
| TCONS_00049208-exon-scaffold_154-1510915933:30396..30607 | TCONS_00049208-exon-scaffold_154-1510915933:30396..30607 | Clytia hemisphaerica | exon |
| TCONS_00049208-exon-scaffold_154-1575043694:30396..30607 | TCONS_00049208-exon-scaffold_154-1575043694:30396..30607 | Clytia hemisphaerica | exon |
| TCONS_00049208-exon-scaffold_154-1491911889:30927..31845 | TCONS_00049208-exon-scaffold_154-1491911889:30927..31845 | Clytia hemisphaerica | exon |
| TCONS_00049208-exon-scaffold_154-1510915933:30927..31845 | TCONS_00049208-exon-scaffold_154-1510915933:30927..31845 | Clytia hemisphaerica | exon |
| TCONS_00049208-exon-scaffold_154-1575043694:30927..31845 | TCONS_00049208-exon-scaffold_154-1575043694:30927..31845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:30396..31845 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015416 | Znf_H2C2_histone_UAS-bd |
Blast
The following BLAST results are available for this feature:
|
