TCONS_00049201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049201
Unique NameTCONS_00049201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049201 ID=TCONS_00049201|Name=TCONS_00049201|organism=Clytia hemisphaerica|type=transcript|length=242bp
GTAAAACTAAGAAAATAGATACAAATCTCTAGAGGCTTTAAGGCCACTAT
TCAAAATAGGAGAATGCCTTTTGATATAAATTGCttcttttattaaaaga
atattCTATCAGACCTATCAATAATAAAAGTGTTATTTTCTATTGTGTTC
AAAAAATAttccttttgttcttttttgtttaatggtttttgttCAAACAA
GAGCATTTTGTTGATGTCGTTAAAGTTCGAACAGGACAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_153:100002..100243

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049201 ID=TCONS_00049201|Name=TCONS_00049201|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at scaffold_153:100002..100243 (Clytia hemisphaerica)
CTTTTGTCCTGTTCGAACTTTAACGACATCAACAAAATGCTCTTGTTTGa
acaaaaaccattaaacaaaaaagaacaaaaggaaTATTTTTTGAACACAA
TAGAAAATAACACTTTTATTATTGATAGGTCTGATAGaatattcttttaa
taaaagaaGCAATTTATATCAAAAGGCATTCTCCTATTTTGAATAGTGGC
CTTAAAGCCTCTAGAGATTTGTATCTATTTTCTTAGTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031244XLOC_031244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049201-exon-scaffold_153-1491911889:100002..100243TCONS_00049201-exon-scaffold_153-1491911889:100002..100243Clytia hemisphaericaexon
TCONS_00049201-exon-scaffold_153-1510915933:100002..100243TCONS_00049201-exon-scaffold_153-1510915933:100002..100243Clytia hemisphaericaexon
TCONS_00049201-exon-scaffold_153-1575043694:100002..100243TCONS_00049201-exon-scaffold_153-1575043694:100002..100243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:100002..100243 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.986175	0	0	0	2.23958	2.09667	0	0.909132	0	0	0.579266	0	0	0	0	0	0	0.968864	2.52636	2.46454	0.998656	0.907923	0	0	1.19429	1.27458	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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