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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049199 ID=TCONS_00049199|Name=TCONS_00049199|organism=Clytia hemisphaerica|type=transcript|length=2161bp
ACCctatgtttatcaaatttttaccaATATAATGCATCtaataaaaatta
caatattcAGTGCATCTTTCTCTTATATTTACACCTGTTTGAAAACCCAT
AACACAACATCTCTTAAATCAAAGTCCATAGTtcactggctgataaaatc
ccaccgggtctgtgagaagggggtgtttgtATCAGTGCGTTTGGTCAAAT
TAAATCAACCTCATAAATTTCAGCCTCGGCGCAAAATCTGTGATCCTAAT
GAAAACCACACCacgatgagacaggggtgtaaaagaaCCATAGTCTATAT
AAAAAACCCcagtctggaagccttttgtttctttccattgtttcctattg
aacttgcgttgagaaattagtttgatTTGCTCACTTtctgatcatgtgat
taaatcttaatacttggtaacgtgatcaaaaactgagcaagtTAAAACAA
TATAAGCTTCCAGACCCGAGTTTCTTATACGGACTATGAAAGAAcagata
aaattttaaatcaacatCCCTGTCTCTGTATATGAATTTACCCTACCCAA
TTAGGTCAGCTGTATGTTCTGAGACGAACGTTTCAAAGCTGCAagctaaa
aaaatcaaaaggggAAGAACccctgagacaggggtgtccaATATAcctct
aaaaaaaaattaatatcccTTTGACAATTTGTTAAATTTTCTAAGGAAAA
GTAGCCTTAATATCTAAGCCAAGGAAAAGTCTTAAAAAAATAGTATAGAG
TATTAAccactttttatttttcattctttcGATTTGAAAGCACAGACGAT
AACAGAAAAATGTTCGTCTTGATTTTCCGTTTGTTCCTCTTTGCGATAAT
ATTTTGAAGGAATACGAATGGTCCAAATGAAATACCCTTTACCCTCATCA
TCACATTTCGTGAGTTTCGGAATCATCTTGCATTCTCCCTGATTCTCTGG
GTGCAAGATATAAATATGATCAACATCATCTGGCCAGCCTTCATCTCTCA
GCTCCTTGGCGGTGCAACCACtctcgaactttaaattctccCCTTTAGAA
CTAAAGGTCAATTCTCGATTTTGTCTTTTATCTTTATCGGTATGTAGTTT
AACGAAAATGTATTCTGCACATTGGTAAACACAATTCCCAACTAATTTCT
TAGTGACATCCTGGTGCCATTGCTGATAATCTTCATACATATGAGTATCT
GCTCCTTTTCCTTCCAGAAATCTCAAAATACCTTCAATAAAACGAGTCTC
AGGATTCACCATGAATCTCGCAGAAAGACGATGAGTATGGGCTTTGTTCT
TCTGACCCTTGGATTCTTTTAAGGCAATCTCTAACTCTTGAACACGTTGA
GATAACTTTTTGTTTTCCTCGATAAATTTTTCTTGTTCAGTTAGTTGTTT
ATCCATGAAGGTTTGCAATTTGTTTTTCATGCTGTCTCTCtcctttttca
gttttttgttttcctcCACCAAAATGCGGTTATCCTGTTGAAGCTCGTTG
ACGTCTAACTCTCCAGCTTTCTTCTTCAAAGTCGAATCTAATGCAGCTTT
CTTTAGAGTCACCCTTTGACCCtgtttttcactattttttaaGGATCCTA
GGGTTGCTTTGACACTTTGGACAATCTCTGTGTGATCATTATCGAACTGT
TTGATGCCATCCCCTCGTCTCTCGACCCCATATACCGAACCACCTCGGCT
TGGCGTTACATTTAACatcattttgagatttttagaCATCTCATCCAGCT
CAGATCTTTCTTTCACCTCAGCTCCTCTTACTTCTTCGTCGTCAGAGTTT
TCAGACGCTTCGGACGACGCAGGGTTGGAACCGATTTCATTCAAAACGTA
CtgataatttaactcgtcatCATCCTCTGATGCTTGCATGGCAGCTGCTT
CATGGAGCAGATCATCTTCAGAGCTTCTTGCTGTTGCCGAAGACGACTTT
TTTGAAGAGGAGGAACGCCGACGACGTTTCTTGTCTTTCTTGTTCATGGT
CAAAACATcaaataatgataataaaataTCATATTATATCGAAGTTCGTC
TCTAAAAAGCCCTTCTACTCCCTATATATCACCACAAACATGCATCGACG
TACATCTCGAAAATATCGTTTCTGTTTTTGTAAACACACCACCGTTGCGG
TTTATATTTCT Run BLAST on NCBI protein sequence of TCONS_00049199-protein >TCONS_00049199-protein ID=TCONS_00049199-protein|Name=TCONS_00049199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MNKKDKKRRRRSSSSKKSSSATARSSEDDLLHEAAAMQASEDDDELNYQY
VLNEIGSNPASSEASENSDDEEVRGAEVKERSELDEMSKNLKMMLNVTPS
RGGSVYGVERRGDGIKQFDNDHTEIVQSVKATLGSLKNSEKQGQRVTLKK
AALDSTLKKKAGELDVNELQQDNRILVEENKKLKKERDSMKNKLQTFMDK
QLTEQEKFIEENKKLSQRVQELEIALKESKGQKNKAHTHRLSARFMVNPE
TRFIEGILRFLEGKGADTHMYEDYQQWHQDVTKKLVGNCVYQCAEYIFVK
LHTDKDKRQNRELTFSSKGENLKFESGCTAKELRDEGWPDDVDHIYILHP
ENQGECKMIPKLTKCDDEGKGYFIWTIRIPSKYYRKEEQTENQDEHFSVI
VCAFKSKE Run BLAST on NCBI transcript from alignment at scaffold_153:44255..46415 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049199 ID=TCONS_00049199|Name=TCONS_00049199|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_153:44255..46415 (Clytia hemisphaerica)
AGAAATATAAACCGCAACGGTGGTGTGTTTACAAAAACAGAAACGATATT
TTCGAGATGTACGTCGATGCATGTTTGTGGTGATATATAGGGAGTAGAAG
GGCTTTTTAGAGACGAACTTCGATATAATATGAtattttattatcattat
ttgATGTTTTGACCATGAACAAGAAAGACAAGAAACGTCGTCGGCGTTCC
TCCTCTTCAAAAAAGTCGTCTTCGGCAACAGCAAGAAGCTCTGAAGATGA
TCTGCTCCATGAAGCAGCTGCCATGCAAGCATCAGAGGATGatgacgagt
taaattatcaGTACGTTTTGAATGAAATCGGTTCCAACCCTGCGTCGTCC
GAAGCGTCTGAAAACTCTGACGACGAAGAAGTAAGAGGAGCTGAGGTGAA
AGAAAGATCTGAGCTGGATGAGATGtctaaaaatctcaaaatgatGTTAA
ATGTAACGCCAAGCCGAGGTGGTTCGGTATATGGGGTCGAGAGACGAGGG
GATGGCATCAAACAGTTCGATAATGATCACACAGAGATTGTCCAAAGTGT
CAAAGCAACCCTAGGATCCttaaaaaatagtgaaaaacaGGGTCAAAGGG
TGACTCTAAAGAAAGCTGCATTAGATTCGACTTTGAAGAAGAAAGCTGGA
GAGTTAGACGTCAACGAGCTTCAACAGGATAACCGCATTTTGGTGgagga
aaacaaaaaactgaaaaaggaGAGAGACAGCATGAAAAACAAATTGCAAA
CCTTCATGGATAAACAACTAACTGAACAAGAAAAATTTATCGAGGAAAAC
AAAAAGTTATCTCAACGTGTTCAAGAGTTAGAGATTGCCTTAAAAGAATC
CAAGGGTCAGAAGAACAAAGCCCATACTCATCGTCTTTCTGCGAGATTCA
TGGTGAATCCTGAGACTCGTTTTATTGAAGGTATTTTGAGATTTCTGGAA
GGAAAAGGAGCAGATACTCATATGTATGAAGATTATCAGCAATGGCACCA
GGATGTCACTAAGAAATTAGTTGGGAATTGTGTTTACCAATGTGCAGAAT
ACATTTTCGTTAAACTACATACCGATAAAGATAAAAGACAAAATCGAGAA
TTGACCTTTAGTTCTAAAGGggagaatttaaagttcgagaGTGGTTGCAC
CGCCAAGGAGCTGAGAGATGAAGGCTGGCCAGATGATGTTGATCATATTT
ATATCTTGCACCCAGAGAATCAGGGAGAATGCAAGATGATTCCGAAACTC
ACGAAATGTGATGATGAGGGTAAAGGGTATTTCATTTGGACCATTCGTAT
TCCTTCAAAATATTATCGCAAAGAGGAACAAACGGAAAATCAAGACGAAC
ATTTTTCTGTTATCGTCTGTGCTTTCAAATCgaaagaatgaaaaataaaa
agtggTTAATACTCTATACTATTTTTTTAAGACTTTTCCTTGGCTTAGAT
ATTAAGGCTACTTTTCCTTAGAAAATTTAACAAATTGTCAAAgggatatt
aatttttttttagaggTATATtggacacccctgtctcagggGTTCTTccc
cttttgatttttttagctTGCAGCTTTGAAACGTTCGTCTCAGAACATAC
AGCTGACCTAATTGGGTAGGGTAAATTCATATACAGAGACAGGGatgttg
atttaaaattttatctgTTCTTTCATAGTCCGTATAAGAAACTCGGGTCT
GGAAGCTTATATTGTTTTAacttgctcagtttttgatcacgttaccaagt
attaagatttaatcacatgatcagaAAGTGAGCAAatcaaactaatttct
caacgcaagttcaataggaaacaatggaaagaaacaaaaggcttccagac
tgGGGTTTTTTATATAGACTATGGttcttttacacccctgtctcatcgtG
GTGTGGTTTTCATTAGGATCACAGATTTTGCGCCGAGGCTGAAATTTATG
AGGTTGATTTAATTTGACCAAACGCACTGATacaaacacccccttctcac
agacccggtgggattttatcagccagtgaACTATGGACTTTGATTTAAGA
GATGTTGTGTTATGGGTTTTCAAACAGGTGTAAATATAAGAGAAAGATGC
ACTgaatattgtaatttttattaGATGCATTATATtggtaaaaatttgat
aaacatagGGT Coding sequence (CDS) from alignment at scaffold_153:44255..46415 >TCONS_00049199 ID=TCONS_00049199|Name=TCONS_00049199|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_153:44255..46415 (Clytia hemisphaerica)
ATGAACAAGAAAGACAAGAAACGTCGTCGGCGTTCCTCCTCTTCAAAAAA
GTCGTCTTCGGCAACAGCAAGAAGCTCTGAAGATGATCTGCTCCATGAAG
CAGCTGCCATGCAAGCATCAGAGGATGatgacgagttaaattatcaGTAC
GTTTTGAATGAAATCGGTTCCAACCCTGCGTCGTCCGAAGCGTCTGAAAA
CTCTGACGACGAAGAAGTAAGAGGAGCTGAGGTGAAAGAAAGATCTGAGC
TGGATGAGATGtctaaaaatctcaaaatgatGTTAAATGTAACGCCAAGC
CGAGGTGGTTCGGTATATGGGGTCGAGAGACGAGGGGATGGCATCAAACA
GTTCGATAATGATCACACAGAGATTGTCCAAAGTGTCAAAGCAACCCTAG
GATCCttaaaaaatagtgaaaaacaGGGTCAAAGGGTGACTCTAAAGAAA
GCTGCATTAGATTCGACTTTGAAGAAGAAAGCTGGAGAGTTAGACGTCAA
CGAGCTTCAACAGGATAACCGCATTTTGGTGgaggaaaacaaaaaactga
aaaaggaGAGAGACAGCATGAAAAACAAATTGCAAACCTTCATGGATAAA
CAACTAACTGAACAAGAAAAATTTATCGAGGAAAACAAAAAGTTATCTCA
ACGTGTTCAAGAGTTAGAGATTGCCTTAAAAGAATCCAAGGGTCAGAAGA
ACAAAGCCCATACTCATCGTCTTTCTGCGAGATTCATGGTGAATCCTGAG
ACTCGTTTTATTGAAGGTATTTTGAGATTTCTGGAAGGAAAAGGAGCAGA
TACTCATATGTATGAAGATTATCAGCAATGGCACCAGGATGTCACTAAGA
AATTAGTTGGGAATTGTGTTTACCAATGTGCAGAATACATTTTCGTTAAA
CTACATACCGATAAAGATAAAAGACAAAATCGAGAATTGACCTTTAGTTC
TAAAGGggagaatttaaagttcgagaGTGGTTGCACCGCCAAGGAGCTGA
GAGATGAAGGCTGGCCAGATGATGTTGATCATATTTATATCTTGCACCCA
GAGAATCAGGGAGAATGCAAGATGATTCCGAAACTCACGAAATGTGATGA
TGAGGGTAAAGGGTATTTCATTTGGACCATTCGTATTCCTTCAAAATATT
ATCGCAAAGAGGAACAAACGGAAAATCAAGACGAACATTTTTCTGTTATC
GTCTGTGCTTTCAAATCgaaagaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049199-exon-scaffold_153-1491911889:44255..46415 | TCONS_00049199-exon-scaffold_153-1491911889:44255..46415 | Clytia hemisphaerica | exon |
| TCONS_00049199-exon-scaffold_153-1510915933:44255..46415 | TCONS_00049199-exon-scaffold_153-1510915933:44255..46415 | Clytia hemisphaerica | exon |
| TCONS_00049199-exon-scaffold_153-1575043694:44255..46415 | TCONS_00049199-exon-scaffold_153-1575043694:44255..46415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:44255..46415 . |
Blast
The following BLAST results are available for this feature:
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