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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049198 ID=TCONS_00049198|Name=TCONS_00049198|organism=Clytia hemisphaerica|type=transcript|length=1158bp
NATTCtcattcttaagattttgaaatttcttttcacaaatagattaaaga
tttttttcaaggtttaCTCGGCAAAACAAGTCTACGTCCATTAGGGTTCG
TAATTTtgttttcgccattttgaagAGTGCCAAATTCAAATACTTGGAGT
TGTAGTAAATAGTCGATTGCTTTAACGTGTATTTTACTGACCGGATTATG
TAGCAAGTGTAGTTCTTGTAGACTTTGGAGTCTTGTTGTTTCTTTTGGTA
AATAACTAATTTTGTTGTTATTCAGGTTAAGCTTTTGTAGTCTCTTTATG
TAAACAAGTGATAGAGGCATCTCAATGAAGCGATTCCCTTCCAAGTTCAG
CtcaatcaaattttccagtaatTTTATATCTTCCGGTAGTTTATATAACT
TATTGTATCCGAGATGCAGCTTTTTTAAGCATTTCAAACATCCAATTTCG
TTTGGTAGGGTCGCGATAGCGTTCAAGCTCAAATCAAGAGTCTCTAGTTG
TGAGAGACTCCATATCGCTGGATGAAGATATACCATTCGATTGTGTTGGA
GTCGTAACTCCTTGAGTTTGTCCAGAGATGAAAGTTCATGCGAAAGTGTT
TTCAAATAGTTGTTATTTAGATTCAGACATCGTATGGAGTGTCTTCCCGA
AAGATCTGGAAATTTGGTCAGCTCTGATGTACTGAGGTCGACGTTGTCTT
TTTTGTTGTTCTTCGGTGCGAGGACTGATGGATAGAAAGGAGTGCTAACA
TTCTGGTGCTGATAGTCTCGTTGCACCTCTGGTAAAACGTATCTGTCCTG
TTGTAGAAGATCTGATAATCTTGGTCCCATTTTGTACGTTTTTTGAAACT
CACTGTGATCTCTTGGTTGACAAAGCCCTGACCTCTTTTACGAAATACCA
AAGCTCAGCTCCACGCCACCAAATTTTCGATTGGCAACTTGTAGAGTTTC
TTCCTTATCCAAGATTAACCAGTCTTCGTTATGTCAACTTCAattaattt
ttagttttctttaTAAAATGAATGGTAATGAGTTAATTGACCATAATTCT
AGGAAGGAAGTAATTTTCTAAGCCCAAGATTAATTTCATATACAGGATGC
ATAGGTCCTTTTAGAAAAAGTTATTGAAAGCGATACTTTACTcagttttc
aaaacaaa Run BLAST on NCBI protein sequence of TCONS_00049198-protein >TCONS_00049198-protein ID=TCONS_00049198-protein|Name=TCONS_00049198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MGPRLSDLLQQDRYVLPEVQRDYQHQNVSTPFYPSVLAPKNNKKDNVDLS
TSELTKFPDLSGRHSIRCLNLNNNYLKTLSHELSSLDKLKELRLQHNRMV
YLHPAIWSLSQLETLDLSLNAIATLPNEIGCLKCLKKLHLGYNKLYKLPE
DIKLLENLIELNLEGNRFIEMPLSLVYIKRLQKLNLNNNKISYLPKETTR
LQSLQELHLLHNPVSKIHVKAIDYLLQLQVFEFGTLQNGENKITNPNGRR
LVLPSKP Run BLAST on NCBI transcript from alignment at scaffold_153:14210..15367 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049198 ID=TCONS_00049198|Name=TCONS_00049198|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at scaffold_153:14210..15367 (Clytia hemisphaerica)
tttgttttgaaaactgAGTAAAGTATCGCTTTCAATAACTTTTTCTAAAA
GGACCTATGCATCCTGTATATGAAATTAATCTTGGGCTTAGAAAATTACT
TCCTTCCTAGAATTATGGTCAATTAACTCATTACCATTCATTTTAtaaag
aaaactaaaaattaatTGAAGTTGACATAACGAAGACTGGTTAATCTTGG
ATAAGGAAGAAACTCTACAAGTTGCCAATCGAAAATTTGGTGGCGTGGAG
CTGAGCTTTGGTATTTCGTAAAAGAGGTCAGGGCTTTGTCAACCAAGAGA
TCACAGTGAGTTTCAAAAAACGTACAAAATGGGACCAAGATTATCAGATC
TTCTACAACAGGACAGATACGTTTTACCAGAGGTGCAACGAGACTATCAG
CACCAGAATGTTAGCACTCCTTTCTATCCATCAGTCCTCGCACCGAAGAA
CAACAAAAAAGACAACGTCGACCTCAGTACATCAGAGCTGACCAAATTTC
CAGATCTTTCGGGAAGACACTCCATACGATGTCTGAATCTAAATAACAAC
TATTTGAAAACACTTTCGCATGAACTTTCATCTCTGGACAAACTCAAGGA
GTTACGACTCCAACACAATCGAATGGTATATCTTCATCCAGCGATATGGA
GTCTCTCACAACTAGAGACTCTTGATTTGAGCTTGAACGCTATCGCGACC
CTACCAAACGAAATTGGATGTTTGAAATGCTTAAAAAAGCTGCATCTCGG
ATACAATAAGTTATATAAACTACCGGAAGATATAAAattactggaaaatt
tgattgaGCTGAACTTGGAAGGGAATCGCTTCATTGAGATGCCTCTATCA
CTTGTTTACATAAAGAGACTACAAAAGCTTAACCTGAATAACAACAAAAT
TAGTTATTTACCAAAAGAAACAACAAGACTCCAAAGTCTACAAGAACTAC
ACTTGCTACATAATCCGGTCAGTAAAATACACGTTAAAGCAATCGACTAT
TTACTACAACTCCAAGTATTTGAATTTGGCACTcttcaaaatggcgaaaa
caAAATTACGAACCCTAATGGACGTAGACTTGTTTTGCCGAGtaaacctt
gaaaaaaatctttaatctatttgtgaaaagaaatttcaaaatcttaagaa
tgaGAATN Coding sequence (CDS) from alignment at scaffold_153:14210..15367 >TCONS_00049198 ID=TCONS_00049198|Name=TCONS_00049198|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_153:14210..15367 (Clytia hemisphaerica)
ATGGGACCAAGATTATCAGATCTTCTACAACAGGACAGATACGTTTTACC
AGAGGTGCAACGAGACTATCAGCACCAGAATGTTAGCACTCCTTTCTATC
CATCAGTCCTCGCACCGAAGAACAACAAAAAAGACAACGTCGACCTCAGT
ACATCAGAGCTGACCAAATTTCCAGATCTTTCGGGAAGACACTCCATACG
ATGTCTGAATCTAAATAACAACTATTTGAAAACACTTTCGCATGAACTTT
CATCTCTGGACAAACTCAAGGAGTTACGACTCCAACACAATCGAATGGTA
TATCTTCATCCAGCGATATGGAGTCTCTCACAACTAGAGACTCTTGATTT
GAGCTTGAACGCTATCGCGACCCTACCAAACGAAATTGGATGTTTGAAAT
GCTTAAAAAAGCTGCATCTCGGATACAATAAGTTATATAAACTACCGGAA
GATATAAAattactggaaaatttgattgaGCTGAACTTGGAAGGGAATCG
CTTCATTGAGATGCCTCTATCACTTGTTTACATAAAGAGACTACAAAAGC
TTAACCTGAATAACAACAAAATTAGTTATTTACCAAAAGAAACAACAAGA
CTCCAAAGTCTACAAGAACTACACTTGCTACATAATCCGGTCAGTAAAAT
ACACGTTAAAGCAATCGACTATTTACTACAACTCCAAGTATTTGAATTTG
GCACTcttcaaaatggcgaaaacaAAATTACGAACCCTAATGGACGTAGA
CTTGTTTTGCCGAGtaaaccttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049198-exon-scaffold_153-1491911889:14210..15367 | TCONS_00049198-exon-scaffold_153-1491911889:14210..15367 | Clytia hemisphaerica | exon |
| TCONS_00049198-exon-scaffold_153-1510915933:14210..15367 | TCONS_00049198-exon-scaffold_153-1510915933:14210..15367 | Clytia hemisphaerica | exon |
| TCONS_00049198-exon-scaffold_153-1575043694:14210..15367 | TCONS_00049198-exon-scaffold_153-1575043694:14210..15367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:14210..15367 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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