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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049197 ID=TCONS_00049197|Name=TCONS_00049197|organism=Clytia hemisphaerica|type=transcript|length=1584bp
TGCCTCAACATTTTATTAGACTCGTATTATTCAaagcaaaattatatttt
ttcgtAAAAAAGTCAATATTTAGAAATTCAATGTCTACATGTTCAGGCAA
ACATTAAAGAAGCTGCAAATTGAAATCCAATTTGTTGATGGAACTCTGTA
CAAAACATTGAATCTTTATCATTCCTCGGTGTCTCCTCCATCTGTGCAAT
AAGTCATTCATTCATATCATTTTTACacccaacaaaaatcataaatacTA
ATATCAACGACATAATATGtcacgaaaaaaaataatattgaatttatatc
tacaaaaaataattttaattcaaGCATTTGAAATACACATTTACATAGAG
TTCAAATTCAAGTTTCTTTTTACATCAAGATATATATCCAAAgcaaaagt
cataaaaaaatctttgataGGTATCGTCACTCATTCATGGGAGGGGAGGG
GTTCGTTAGCTGTGGGGCAAGGTCGATTTCTGATTGGTTGTTGGGTAAAG
GTTGTCAGAAAGGAGGGATGGTAAAGGGGATTCCCAAGATAATCGAAATT
TCCAAAGTGTTAAATCGTCTTCGGAAGTCGTCGAAGAGTCGGAAGAAAGA
TTTCCCCACCACTGTCAAACTGCTTTTATAAGTAttagttttgaaaataa
agtataaaaataTAACTTAGTTCGATACTTTCTAGTCTATATATAAAAAA
CCAAGGGCAAAAAATACACTAAATTGCAGTCTAGAGATGTCAGACAAAAG
AAGATTTCATCTCTTCAAAAATCAACATACAAGCATGAAAACAACGATTG
TATTTTAACTTTGACTTGAGGGGTCTGCGAGGATGAAATCTTCCTTAAtc
gtaaaatttaaaaagaaagctAATGGTCGTGCACATATTCCAGTCAAGAA
CAAGAGGTCAAAATGTATATCACGTCGAACACTTCGATCACCTAGCATCA
CTATTATCCAGGTACTTTTCAAATGAATGATTGTCatcctatttttcaaa
aaacaccaACACATCTCATTCATCCAGGGGACAGGACAACGGAATATCTC
TGGCAatacaacatcaaaacaaacacttcAACGGAAATTGGCGAATTCAT
CTGGTGGTTCGTTCAAGGCGTAAGGAAAAGACATCGGTCTTGGTCTCCTT
AATAAGTTCGAGAATTCCATATCATTTAAATGGTCCTCTTTATCAGAAGA
AGGTCTTTCATTCTCGGTGATGTGTTCTTCGTCCTCATCTTCACCGTCAG
agtaataaaattgtttttgtgAACTTGAAGAGCTCGTTGAACGAACACGA
CTGACTGTCTTTTTGGTATTGGGCGTGGCAGATACGAAACCATATTTGGT
ACTTGGTGACGTTGGACAATTGTTGTTGGTGATGTACGATTCGTTCTTCT
TCAAATCCTAAATGTGagtgaaaaaagaagaatttcaaGCTTCTATAGAG
AGGCTGGATAAAAAGAAACTcctttttggggaaaaattgttttgatctAA
CAAAAGTAGGTTGAGAATATAAACAGCTATTCTTTCAACACTTGGTAGGA
ACTTCAAATATTAAGATCATTTTAAAAAGGTGCG Run BLAST on NCBI transcript from alignment at scaffold_153:1921..3504 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049197 ID=TCONS_00049197|Name=TCONS_00049197|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at scaffold_153:1921..3504 (Clytia hemisphaerica)
CGCACCTTTTTAAAATGATCTTAATATTTGAAGTTCCTACCAAGTGTTGA
AAGAATAGCTGTTTATATTCTCAACCTACTTTTGTTagatcaaaacaatt
tttccccaaaaaggAGTTTCTTTTTATCCAGCCTCTCTATAGAAGCttga
aattcttcttttttcactCACATTTAGGATTTGAAGAAGAACGAATCGTA
CATCACCAACAACAATTGTCCAACGTCACCAAGTACCAAATATGGTTTCG
TATCTGCCACGCCCAATACCAAAAAGACAGTCAGTCGTGTTCGTTCAACG
AGCTCTTCAAGTTcacaaaaacaattttattactCTGACGGTGAAGATGA
GGACGAAGAACACATCACCGAGAATGAAAGACCTTCTTCTGATAAAGAGG
ACCATTTAAATGATATGGAATTCTCGAACTTATTAAGGAGACCAAGACCG
ATGTCTTTTCCTTACGCCTTGAACGAACCACCAGATGAATTCGCCAATTT
CCGTTgaagtgtttgttttgatgttgtatTGCCAGAGATATTCCGTTGTC
CTGTCCCCTGGATGAATGAGATGTGTtggtgttttttgaaaaataggatG
ACAATCATTCATTTGAAAAGTACCTGGATAATAGTGATGCTAGGTGATCG
AAGTGTTCGACGTGATATACATTTTGACCTCTTGTTCTTGACTGGAATAT
GTGCACGACCATTagctttctttttaaattttacgaTTAAGGAAGATTTC
ATCCTCGCAGACCCCTCAAGTCAAAGTTAAAATACAATCGTTGTTTTCAT
GCTTGTATGTTGATTTTTGAAGAGATGAAATCTTCTTTTGTCTGACATCT
CTAGACTGCAATTTAGTGTATTTTTTGCCCTTGGTTTTTTATATATAGAC
TAGAAAGTATCGAACTAAGTTAtatttttatactttattttcaaaactaa
TACTTATAAAAGCAGTTTGACAGTGGTGGGGAAATCTTTCTTCCGACTCT
TCGACGACTTCCGAAGACGATTTAACACTTTGGAAATTTCGATTATCTTG
GGAATCCCCTTTACCATCCCTCCTTTCTGACAACCTTTACCCAACAACCA
ATCAGAAATCGACCTTGCCCCACAGCTAACGAACCCCTCCCCTCCCATGA
ATGAGTGACGATACCtatcaaagatttttttatgacttttgcTTTGGATA
TATATCTTGATGTAAAAAGAAACTTGAATTTGAACTCTATGTAAATGTGT
ATTTCAAATGCttgaattaaaattattttttgtagatataaattcaatat
tattttttttcgtgaCATATTATGTCGTTGATATTAgtatttatgatttt
tgttgggtGTAAAAATGATATGAATGAATGACTTATTGCACAGATGGAGG
AGACACCGAGGAATGATAAAGATTCAATGTTTTGTACAGAGTTCCATCAA
CAAATTGGATTTCAATTTGCAGCTTCTTTAATGTTTGCCTGAACATGTAG
ACATTGAATTTCTAAATATTGACTTTTTTacgaaaaaatataattttgct
tTGAATAATACGAGTCTAATAAAATGTTGAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049197-exon-scaffold_153-1491911889:1921..3504 | TCONS_00049197-exon-scaffold_153-1491911889:1921..3504 | Clytia hemisphaerica | exon |
| TCONS_00049197-exon-scaffold_153-1510915933:1921..3504 | TCONS_00049197-exon-scaffold_153-1510915933:1921..3504 | Clytia hemisphaerica | exon |
| TCONS_00049197-exon-scaffold_153-1575043694:1921..3504 | TCONS_00049197-exon-scaffold_153-1575043694:1921..3504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:1921..3504 . |
Blast
The following BLAST results are available for this feature:
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