TCONS_00049189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049189
Unique NameTCONS_00049189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049189 ID=TCONS_00049189|Name=TCONS_00049189|organism=Clytia hemisphaerica|type=transcript|length=679bp
GTCGTGTAAAAATGTTGAACAAACGATTCACAAAGAGGACGGTTAAAGCT
AAAGTTTATAAAGGCAAAAGTGAGATATCACGGAAAATTACCCAAAATAC
CACGTGCTGAAGAGTTTAAGGAAGAACTGAAAGAGATTGTGACAGatTTC
CAGTCCATGGTGGAAGATTTCGGTATTTCCTATCGCTTAACATTTCAACC
AAAGACTGGCGGAGAGGTCTTCATTGTTGAGGGTTCCCCAGCGAAAGAAG
ATAAGAAACAACAGACTACCGATGATGATGCATATCCTGAAACCGATCTG
ATAGTTCGTCTCGAAGCTCAAAAGGTTGTTGAGCCACAGCTAGCTGCCAG
TTGTCCTCCATCCAAACGAAATGGACCTTACGTCGATATCACCAAACCGA
TCATTGGTCTTCCTCCTGGACCCTTTTATTAAATTCTGTTTCATGATTAC
GAGATGACGGATGTTTTGAAGAGTAGAAGTTCCATGTTCCGCTATTTATT
GAGTTTTAagagattttatattttttaattttagagtTTATGAATGTTCC
CTTAATGTACGCCATATATTTTGGTAGCCTTATTTGTTTTCCACTTTTga
taaagatgagaaaaaatattCGCATAACTATTAATGCAGATAGAAGAAAT
ACCGGTTTAAAGGGTTTGGTTTAATTGCC
Run BLAST on NCBI

transcript from alignment at scaffold_153:50117..53524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049189 ID=TCONS_00049189|Name=TCONS_00049189|organism=Clytia hemisphaerica|type=transcript|length=3408bp|location=Sequence derived from alignment at scaffold_153:50117..53524- (Clytia hemisphaerica)
GTCGTGTAAAAATGTTGAACAAACGATTCACAAAGAGGACGGTTAAAGCT
AAAGTTTATAAAGGTAAGATACATTCTTTTCCTCTCTACATAAAGTGGAG
ACCCATGTGATGAATTAAAAGCCTTTTGGGTTTGTTGTGAGAAGAGTCCC
TTCCATTGATTGCGATAAAAATCTTTTTAAAGTCTAACCTTTTAAAGGGT
TGCAAGATCGTGGAAATCAAAAATTCTCCTTTTCTAAGAAGAGTCACATT
TTTGCTACAGACCTTTGCCTAGACCTAAATTTACTGAAAATCAAACAAAA
ATTTTCGCACATGCTTTCCTTTACCGCATAATGTTTTGAGAAAGTATTCT
TCTATCCCCGGGGGGGGGGCACTGGGTTTGCGGACTGACGGTATGTGCGG
GCTAAAAATTGGCTTTTAAAATTGCACCCTTACAGTGCAGCAAAAATCAG
CGAAAATCATACCCTTAGAGTGCATTTTCCCCCAAATTTTCAATCCCTTT
CGTGCAAAAAATGGTCAAAATTCTAGCATTTTTGGTCAAAATATCTAGAT
TTTTCAAGAATTTTCTGAAATTTCTACCCTTACAGTGCATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTTT
TCCGACCCTTACAGTGCATTTTAAACATATTGGAAAAGGTACCCTTAGGA
CCCGCACATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCCCCCGGGCTT
CTATCTCGATTCATGAAATGAATGATTGGTTGCCCGAGTTAATAAAGTGA
AGCATAACCCCCGATATCTCCTTGACCCTAATAGTTTTTTCAATTCAAAA
TATCACTGATTTGTTTTATACTATTTGTTAATTTTACCAGCAAAAGTGAG
ATATCACGGAAAATTACCCAAAATACCACGTGCTGAAGAGTTTAAGGAAG
AACTGAAAGAGATTGTGACAGATGTAAGTTTTTTTATTGTTGAAATATTT
TTCTTGGTGTATCATGATCATAATCAATCTTGAGCAGCGACTGTCTGAAA
CGCTGAAGGGGGTAGCTTTTTTACAGGAAATAAATCTTCTGTTTTTTTTC
ATTCGTGCCATTATTGTATTGAGTCACTCAGTATTATTTTTATACTAGAT
ATAGCTTACACTAAGTGCCACCTAATGATAATAAATAAAATATATTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTATCCCGTAAAATATATATAGGGAAAAGATTCCAGAAAAGTAT
CAAGAATCTTAGTGCGGAAATGGGAATCTTATACAAAACAACGGTACACT
GGAGTTTTTTATGATTCAAAATGAAAATCCTGATTAGCAAAAGGTATCAA
GATCGTTGAAGTTCTATATTGAAGCTTCATTTATTACCTTGTTGCCCATT
TCCGACGGCTTATTAGCAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGACAAAAAAAAAAAAAAAGACGGC
GAAAATTTAAACCATCTGCACAACCTCGTGAAGCTATGAAGCCACCTATG
CTCGCTGTGCTCGCTCGGTGGCAAAAATTTTGGAATATCTTTGTAGACTT
ACGTTCGGATTTACGGGAAATTCCCAAAGAACCTAGAAAACCTCTATACT
GAAAAAAATCCTAAAAACCTCTTATGCTTAAGTTCCAGTCCATGGTGGAA
GATTTCGGTATTTCCTATCGCTTAACATTTCAACCAAAGACTGGCGGAGA
GGTCTTCATTGTTGAGGGTTCCCCAGCGGTAAGTACTTTTTGCTAATTTA
GAAAAAATTCTTAACGGCTAATAGTTTCGATTTCTCTTTGCAAAAAATAA
TCTAAAACTGCTCTGAGAATTGAATGATGGGTTTTCCAAAAAAATTCAGT
TTTTTTAGAATTGTTGGATTTACTTTTGCGAAGTGGCCAAAAATAAGTTA
AGAGTTATATGGATTTTATCTCGTGAAGATTGATATCGTGATATTCAAAA
ACATTTTCAATGGACACTCTGTAGTATGTGATACTGAAGCCATAAACATT
CATAGACCATTCACAGTATATAATTATATGCAATCCCATAATTTATAGAA
AGAAGATAAGAAACAACAGACTACCGATGATGATGCATATCCTGAAACCG
ATCTGATAGTTCGTCTCGAAGCTCAAAAGGTTCGTTGATGAAAATTGTCA
CGAAAGATAAAATTGTTTTAGGTGGAACCGCCAAAAAAGTTATCAATATC
AATCAAGGCTTGGTGACACGAGCGGTTTTTTTTTGTGTTGGTGCAATGCA
ACATGCTCCATCCCACCAACACAAGAAAAATGTGTGTGTCCCATGGTTTC
TTTTTATGTTTCATGGGATAAAAAGTGAGGGAAATACCCAAAAGACCCCT
GCGACAATGGAGCAAAAAAACCCTCACGGTGAATATTACATACTCTTATG
TTTCAGGTTGAGCCACAGCTAGCTGCCAGTTGTCCTCCATCCAAACGAAA
TGGACCTTACGTCGATATCACCAAACCGATCATTGGTCTTCCTCCTGGAC
CCTTTTATTAAATTCTGTTTCATGATTACGAGATGACGGATGTTTTGAAG
AGTAGAAGTTCCATGTTCCGCTATTTATTGAGTTTTAAGAGATTTTATAT
TTTTTAATTTTAGAGTTTATGAATGTTCCCTTAATGTACGCCATATATTT
TGGTAGCCTTATTTGTTTTCCACTTTTGATAAAGATGAGAAAAAATATTC
GCATAACTATTAATGCAGATAGAAGAAATACCGGTTTAAAGGGTTTGGTT
TAATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031235XLOC_031235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049189-exon-scaffold_153-1575043694:53462..53524TCONS_00049189-exon-scaffold_153-1575043694:53462..53524Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1575043694:52452..52535TCONS_00049189-exon-scaffold_153-1575043694:52452..52535Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1575043694:51147..51242TCONS_00049189-exon-scaffold_153-1575043694:51147..51242Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1575043694:50743..50826TCONS_00049189-exon-scaffold_153-1575043694:50743..50826Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1575043694:50117..50468TCONS_00049189-exon-scaffold_153-1575043694:50117..50468Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1510915933:53462..53524TCONS_00049189-exon-scaffold_153-1510915933:53462..53524Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1510915933:52452..52535TCONS_00049189-exon-scaffold_153-1510915933:52452..52535Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1510915933:51147..51242TCONS_00049189-exon-scaffold_153-1510915933:51147..51242Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1510915933:50743..50826TCONS_00049189-exon-scaffold_153-1510915933:50743..50826Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1510915933:50117..50468TCONS_00049189-exon-scaffold_153-1510915933:50117..50468Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1491911889:53462..53524TCONS_00049189-exon-scaffold_153-1491911889:53462..53524Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1491911889:52452..52535TCONS_00049189-exon-scaffold_153-1491911889:52452..52535Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1491911889:51147..51242TCONS_00049189-exon-scaffold_153-1491911889:51147..51242Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1491911889:50743..50826TCONS_00049189-exon-scaffold_153-1491911889:50743..50826Clytia hemisphaericaexon
TCONS_00049189-exon-scaffold_153-1491911889:50117..50468TCONS_00049189-exon-scaffold_153-1491911889:50117..50468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:50117..53524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.1281	47.6494	6.67294	7.9237	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	326.456	233.691	0	0	10.3795	20.0361	162.858	212.276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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