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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049188 ID=TCONS_00049188|Name=TCONS_00049188|organism=Clytia hemisphaerica|type=transcript|length=1771bp
CCtttagataaaaataaaatggctACTAGTGATTATAAATATACAAAGAT
CTCCGAGTTGAAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCA
AATATTACAGAGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATG
CTTACATTGGTCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAG
ATGTAATTTGTTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGA
TTGGAGACATTGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGA
AGGTTACAATTGCAAGCTAATAAACGAGCTTATGCATGGATCGTGGTGTC
AATGGATGATGTGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCA
CCATTATAGACAGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACA
AATGTTACATCAGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGA
TTTTACTATGAACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTT
ACAGATTCGAAACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAA
GTCAGTTTTTCATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCT
TATGCACTGGGTTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCT
TTGATATTTCAGTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAA
GTGGGTgattatgttttattttgtaatctacacatcaAAAGAGTGACCTA
CAGCACCTATACTTCTGGAATGATACACACATTCAATCTGAAAGAGgTGC
AAGACAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCGCTCCTAC
GGGCGTGGAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTGCAGACAT
CAAGGGGCGGGTACAAGCTTTAATGGACAATTATCAAGCCAATAAAGCAA
GAGAACACGTACCGAGACCTTTACAAGACTCTTTAACAACCACTGACTAC
CCAGCACAACCCTTTCGTGCAATACAGACAATTCAAAATACAGCCGTACC
AAATAAATTTCGTTTACGAGGGAAATTAATCGGTATAAAACCACGCTCGA
TCGAAGACTTTGTTATGAAAATGTGTAATGGGTGTGATACAATATATTCA
CGTAGTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAGAACTAGA
GCATAAGATATATTTTCAATTACTGGTCGAAGATCACACAGGACTTTTAA
AAGCTGACGTCTACGATAAAGAGGCAGAATATTTCTTGAACTCGATGACC
CCACACATTTTATTGACTGACTCAGCGAGACGTGAAAACGTAGagttgaa
aatgaagactttgTTAGACGACTCGATCAATCCAAGAgtgaaaatgaatt
tgaaacACTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAAAGATGCG
TTTAATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTTGACCTAC
TTGTTCTAACTGTACTTTTTATGAACTTCTTGATAACATTCCGCAAACTT
CTGAAAGAACCATTCTTCTGCAATACATTCGTGCAAGTCTTCTCAGGAAA
TTAAAACAATTGAGTGTAAAGCACCAAagggggacaagctggagttttta
caagctctcgtttgatttggttggtcgttaacctgtaataaaacaatttt
gttactttttctaaagaacgc Run BLAST on NCBI transcript from alignment at scaffold_153:15837..18668- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049188 ID=TCONS_00049188|Name=TCONS_00049188|organism=Clytia hemisphaerica|type=transcript|length=2832bp|location=Sequence derived from alignment at scaffold_153:15837..18668- (Clytia hemisphaerica)
CCTTTAGATAAAAATAAAATGGCTACTAGTGATTATAAATATACAAAGAT
CTCCGAGTTGAAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCA
AATATTACAGAGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATG
CTTACATTGGTCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAG
ATGTAATTTGTTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGA
TTGGAGACATTGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGA
AGGTTACAATTGCAAGCTAATAAACGAGCTTATGCATGGTAAGATTCTCC
TTCAATCTCCTTCTTCAAAACTCACTGATCTTCTAGCCAAGAATATTTTT
CATTGTTTTGCTGATAGTAGAACTACGGCCAACATAGTCAGATAGAATAT
GAATTTAGGGATCACCAAAGAGTTTAAGGAAAGTTCCTCATGTGGTATAT
TTGTAAGAAAGAAATGATAAATAGGATGATAAACGGGCACTAGATTTTTC
ATTTTTTTGAAATTTCTATGCATAGAATATCGAGAAAAATACCCGCAAAA
AATGTCCATTTTTAGCTCCAGTATGCTGCTACCATGGCTCCAGACCTTTT
AAAAGGCTAAAATGAACAACGTGGAAGTGGTGAAACTCTAAACATCCATA
ACAATATCCACCTATTGATTTTAGGATCGTGGTGTCAATGGATGATGTGN
TCTAAACATCCATAACAATATCCACCTTTTGATTTTAGGATCGTGGTGTC
AATGGATGATGTGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCA
CCATTATAGACAGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACA
AATGTTACATCAGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGA
TTTTACTATGAACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTT
ACAGATTCGAAACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAA
GTCAGTTTTTCATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCT
TATGCACTGGGTTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCT
TTGATATTTCAGTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAA
GTGGGTGATTATGTTTTATTTTGTAATCTACACATCAAAAGAGTGACCTA
CAGCACCTATACTTCTGGAATGATACACACATTCAATCTGAAAGAGGTAT
GAGAATTCATTTAACAGAACTCGTGTTTTTACAAATGTTTCTTGGTAGTA
AATTAGTCGTCTAAATGGGCCCCTAAATGAAAAAAAGTAAAGCTCGAAAG
AAAAAAAATCAATCACTCATTTTTGGGAGGTCAGTTTTCTAAATTATAAC
GACTATAAGCTTATCCTTTGAAAAGCCTGGTTTAATTTTCCACCTTTTAA
GATTTTGGAGAAACCATGTAACGTTTTCGACAAGACGATATTTATTAGCG
GTTTTTCGGGGGTTAAAAGTTCTATTTTAGGACCCATTTCGAGTCAATTT
GAAAAGACATTATGAAAAATAGCCGAAAGTTTTCAAAATAGCCTTTCTCG
GCAAAAAAAGTGAAGGGAAGCAAAATAAATGCAACGAGCTGAAGAAAAAA
GGCGCTCGGAATAATTGTCGAGTCCCCCTCCTCTACGGCACGTTCATCTC
AATGTCCATCTATAGCTAAATCTACTTTAATTTTTAGTTGTATATTTAAA
CAGTGTTATAACAGACTTGTTTGCAAGTTTGATCCAATCGGTCAATCTTG
CCTGAAATCTTAATACTGCAATCCCGAAAATGTCTTACTTTTTTTTTCAT
TCTTTAGGTGCAAGACAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTG
GGCGCTCCTACGGGCGTGGAATTTCCATTGTTGAGGCAGATCGTACTGGT
GTTGCAGACATCAAGGGGCGGGTACAAGCTTTAATGGACAATTATCAAGC
CAATAAAGCAAGAGAACACGTACCGAGACCTTTACAAGACTCTTTAACAA
CCACTGACTACCCAGCACAACCCTTTCGTGCAATACAGACAATTCAAAAT
ACAGCCGTACCAAATAAATTTCGTTTACGAGGGAAATTAATCGGTATAAA
ACCACGCTCGATCGAAGACTTTGTTATGAAAATGTGTAATGGGTGTGATA
CAATATATTCACGTAGTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAA
AAAGAACTAGAGCATAAGATATATTTTCAATTACTGGTCGAAGATCACAC
AGGACTTTTAAAAGCTGACGTCTACGATAAAGAGGCAGAATATTTCTTGA
ACTCGATGACCCCACACATTTTATTGACTGACTCAGCGAGACGTGAAAAC
GTAGAGTTGAAAATGAAGACTTTGTTAGACGACTCGATCAATCCAAGAGT
GAAAATGAATTTGAAACACTTCCCTTGGATCGAGTTGTGTTTGTATTCGT
TCAAAGATGCGTTTAATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTA
ATTTGACCTACTTGTTCTAACTGTACTTTTTATGAACTTCTTGATAACAT
TCCGCAAACTTCTGAAAGAACCATTCTTCTGCAATACATTCGTGCAAGTC
TTCTCAGGAAATTAAAACAATTGAGTGTAAAGCACCAAAGGGGGACAAGC
TGGAGTTTTTACAAGCTCTCGTTTGATTTGGTTGGTCGTTAACCTGTAAT
AAAACAATTTTGTTACTTTTTCTAAAGAACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049188-exon-scaffold_153-1575043694:18331..18668 | TCONS_00049188-exon-scaffold_153-1575043694:18331..18668 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1575043694:17373..17880 | TCONS_00049188-exon-scaffold_153-1575043694:17373..17880 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1575043694:15837..16761 | TCONS_00049188-exon-scaffold_153-1575043694:15837..16761 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1510915933:18331..18668 | TCONS_00049188-exon-scaffold_153-1510915933:18331..18668 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1510915933:17373..17880 | TCONS_00049188-exon-scaffold_153-1510915933:17373..17880 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1510915933:15837..16761 | TCONS_00049188-exon-scaffold_153-1510915933:15837..16761 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1491911889:18331..18668 | TCONS_00049188-exon-scaffold_153-1491911889:18331..18668 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1491911889:17373..17880 | TCONS_00049188-exon-scaffold_153-1491911889:17373..17880 | Clytia hemisphaerica | exon |
| TCONS_00049188-exon-scaffold_153-1491911889:15837..16761 | TCONS_00049188-exon-scaffold_153-1491911889:15837..16761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:15837..18668 - |
Blast
BLAST of TCONS_00049188 vs. Swiss-Prot (Human)
Match: POTE1 (Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.484e-28 Identity = 110/411 (26.76%), Postives = 182/411 (44.28%), Query Frame = 1
Query: 19 MATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLTLVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRLQ-LQANKRAYAWIVVSMDDVENVKSSHENFTFTIIDRRTVEALCEFYKTNVTSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVSFSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVGDYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGRGISIVEADRTGVADIKGRVQALMDNYQANKARE--------------------HVPRPLQDSLTT-TDYPAQPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGC 1185
+ ++Y YT +++LK G VN+YG+VK+++ P + Y S++T+VD++ + C LF + + LP I K GDIVR HR I+ + Q + ++ A ++ ++S + F FT D + VEAL + T+++ + L D Y + +++G + LLKV DG++ F S+R I + L D +N + DI V+D+HV + LKVG ++ +LH K + ++ M+ E LH G SYGRGI ++ + V +K +++ N AN+ + V R Q S T TD+ + I P ++R+R KL KPR + V C C
Sbjct: 4 VPATNYIYTPLNQLK-GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-----NVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSP----SWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRV--LIQDLVLEG--DLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLS-------------LEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES--ANLTANQHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQYRIRAKLRSYKPRRLFQSVKLHCPKC 385
The following BLAST results are available for this feature:
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