|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049183 ID=TCONS_00049183|Name=TCONS_00049183|organism=Clytia hemisphaerica|type=transcript|length=3802bpRun BLAST on NCBI transcript from alignment at scaffold_153:253792..262231+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049183 ID=TCONS_00049183|Name=TCONS_00049183|organism=Clytia hemisphaerica|type=transcript|length=8440bp|location=Sequence derived from alignment at scaffold_153:253792..262231+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049183 vs. Swiss-Prot (Human)
Match: HERC2 (E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2) HSP 1 Score: 1277.69 bits (3305), Expect = 0.000e+0 Identity = 655/1249 (52.44%), Postives = 885/1249 (70.86%), Query Frame = 2
Query: 35 KVSQCLLNTCIAELEEKIAYNLTLQEKYKPCVQESSHPYQGVPGVKLSGSVKFPGAAMLLVEFNDQCQTEAAHDVLTFFDQAGRTLAVRTGHLPTDWNTKLKVTGEELNWSFTTNSPGGLWGFKFVVTPVPPVDDSESNTWSDTSILQTPCMELVKRLLRIAIPNGCFNELTILKLASLLATCIRIKLIAYEEKRWMXXXXXXXXXSPNAPPVNVPLIFNSSATHDPSACKLRISGNQAIQDAVTSSTLAEFISGIPNALLKQYEYEEGHVRSGDQLMHSTFLRSLALFACSLGIDTLPVCHDKYKWAWFHKYCTAIRAAQSFIQNSQLPKSFSQTVRGRLEEIKGENESTLSLDYENNDLFDRTQDEQILTWLNRRSQDWSVIWGGSGTIYGWGHNHRGQLGGIDGTRIKRPAVCDSLAALKPTQIVGGEQSLFCVTGDGKVYATGYGNSSRLGLGIIESVNTPRLIESLQHIMIKKVSVHSGGRHCLALSSDGEIFSWGEGDDGKLGHGNRVSCGHPKLIDSFRGKLMTDISAGGSHSAALSDTGELYTWGKGRYGRLGHGDGEDQLRPKMVEALKDYCVVDIACGSGDAQTLCITNNDQVWSWXXXXXXXXXXXXXXXCKVPLLIEELSGKSVIHVECGSQFSMALTRNGALYTWGKGDYYRLGHGSEEHVRRPKRVSALELKIVTSICCGSLHCVATTSDGEIYCWGDNDEGQLGDNTTNAGHEPKLCTALQSKKIDQIACGSAHTIAWSTCENGER-TIPNNIPIEYNYLHELSMTTIRNRALLLHSFSKVFCSSIPLMDLIED-NDVSCGGELMINSLKGIILSSYKENFFRKIIDLTMVRDRQHGPVVELNRVKKHRSTRD---ADEDCSKSVFAQLTSKISEFSLESFCLPHRIWKVKFIGESVDDCGGGFSESIAELCDELQNGTLPLLVATPNSKEEGSTQSDYFIINPFAKDKEHKEMFRFLGIVFGVAIRCGSPLNLRLAESVWKLLVGHTLNLDDLQDLDRGFVSKQSYLTSLQNDNLPSPETTPDEIDEVAALDLSFTVRSASGEDVPLSQTPCIITRENKQDYLKKALKYRLNEFNEQIRWIRAGXXXXXXXXXXXXFTGPELENMVCGSPEISVESLKSITSYRGVESTSHLVQWFWQSLEEFTNHERSLFLRFVWGRTRLPRTAMDFKGKDFIFQVLEKYQPPDTYLPESYTCFFLLKMPKYTTFEILREKLKYAIYFCKSIDSDDYARIDL 3766
+V+ LL C+ ELE+ + + + +P V ESSHPY SG+VK PGA L VEF+ QC TE HD LT D R ++VR+G +DW+++L++ G+EL W F ++ WG++F V P+ P + SD +L P M+LV LL + N N + +LA+ LA C ++ +A + W L +L LL + +N+ + +D L +G S LA + G+P AL +Q+EYE+ VR G QL+HS F + L AC L +DTLP C + +KWAWF +YC A R A + + + LP+ F V ++ E+ ++E+ + + +E++D+F R QDEQ++ W+NRR DW++ GGSGTIYGWGHNHRGQLGGI+G ++K P C++LA L+P Q++GGEQ+LF VT DGK+YATGYG RLG+G ESV+TP L+ES+QH+ IKKV+V+SGG+HCLALSS+GE++SWGE +DGKLGHGNR C P++I+S RG + D++AGG+HSA ++ G+LYTWGKGRYGRLGH D EDQL+PK+VEAL+ + VVDIACGSGDAQTLC+T++D VWSWGDGDYGKLGRGGSDGCKVP+ I+ L+G V+ VECGSQFS+ALT++GA+YTWGKGDY+RLGHGS++HVRRP++V L+ K V +I GSLHCV T DGE+Y WGDNDEGQLGD TTNA P+L ALQ KK++++ACGSAHT+AWST + +P +P+EYN+L E+ + +RNR LLLH S++FC IP+ DL ++ G + ++L+GI++S KE FRK++ TMVRDRQHGPVVELNR++ RS A D +KSVF Q+ +K+S F +S LPHR+WKVKF+GESVDDCGGG+SESIAE+C+ELQNG PLL+ TPN ++E D ++++P A+ H MFRFLG++ G+AIR GSPL+L LAE VWK L G +L + DL ++D+ F+ Y+ DN E T +E + A+ L FTV SASG+D+ LS IT +N+ +Y++ A+ YRL+EF+EQ+ +R G+++VVPVPLLSLFTG ELE MVCGSP+I + LKS+ +Y+G+E ++ L+QWFW+ +E F+N ERSLFLRFVWGRTRLPRT DF+G+DF+ QVL+KY PPD +LPESYTCFFLLK+P+Y+ ++L EKLKYAI+FCKSID+DDYARI L
Sbjct: 3582 QVADMLLELCVTELEDVATDSQSGRLSSQPVVVESSHPY--TDDTSTSGTVKIPGAEGLRVEFDRQCSTERRHDPLTVMDGVNRIVSVRSGREWSDWSSELRIPGDELKWKFISDGSVNGWGWRFTVYPIMPAAGPK-ELLSDRCVLSCPSMDLVTCLLDFRL-NLASNRSIVPRLAASLAACAQLSALAASHRMWALQRLRKLLTTEFGQSININRLLGE---NDGETRALSFTG----------SALAALVKGLPEALQRQFEYEDPIVRGGKQLLHSPFFKVLVALACDLELDTLPCCAETHKWAWFRRYCMASRVAVALDKRTPLPRLFLDEVAKKIRELMADSEN-MDVLHESHDIFKREQDEQLVQWMNRRPDDWTLSAGGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSKPASAGKLPAQVPMEYNHLQEIPIIALRNRLLLLHHLSELFCPCIPMFDLEGSLDETGLGPSVGFDTLRGILISQGKEAAFRKVVQATMVRDRQHGPVVELNRIQVKRSRSKGGLAGPDGTKSVFGQMCAKMSSFGPDSLLLPHRVWKVKFVGESVDDCGGGYSESIAEICEELQNGLTPLLIVTPNGRDESGANRDCYLLSPAARAPVHSSMFRFLGVLLGIAIRTGSPLSLNLAEPVWKQLAGMSLTIADLSEVDKDFIPGLMYI----RDN----EATSEEFE---AMSLPFTVPSASGQDIQLSSKHTHITLDNRAEYVRLAINYRLHEFDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLIQWFWEVMESFSNTERSLFLRFVWGRTRLPRTIADFRGRDFVIQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIHFCKSIDTDDYARIAL 4801 HSP 2 Score: 405.986 bits (1042), Expect = 1.505e-116 Identity = 199/368 (54.08%), Postives = 273/368 (74.18%), Query Frame = 2
Query: 1205 IYGWGHNHRGQLGGIDGTRIKRPAVCDSLAALKPTQIVGGEQSLFCVTGDGKVYATGYGNSSRLGLGIIE-SVNTPRLIESLQHIMIKKVSVHSGGRHCLALSSDGEIFSWGEGDDGKLGHGNRVSCGHPKLIDSFRGKLMTDISAGGSHSAALSDTGELYTWGKGRYGRLGHGDGEDQLRPKMVEALKDYCVVDIACGSGDAQTLCITNNDQVWSWXXXXXXXXXXXXXXXCKVPLLIEELSGKSVIHVECGSQFSMALTRNGALYTWGKGDYYRLGHGSEEHVRRPKRVSALELKIVTSICCGSLHCVATTSDGEIYCWGDNDEGQLGDNTTNAGHEPKLCTALQSKKIDQIACGSAHTIAWSTCE 2305
++ WG N + QLGG+ G++IK P+ ++L+AL Q+ GG +SLF VT +GKVYA G + RLGLGI +V PR I +L ++KKV+VHSGGRH AL+ DG++FSWGEGDDGKLGH +R++C P+LI++ + K + DI+ G SHSAAL+ +GELYTWG G YGRLGHGD QL+PKMV+ L + V+ +ACGS DAQTL +T+ V+SWGDGD+GKLGRGGS+GC +P IE L+G+ V +ECG+QFS+ALT++G ++TWGKGDY+RLGHGS+ HVR+P+ V L K + + G+LHC+A T G++Y WGDND GQ G+ TT +P L L+ +KI ++ACGS+H++AW+T +
Sbjct: 2961 VFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLGLGISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVAWTTVD 3328 HSP 3 Score: 315.079 bits (806), Expect = 3.250e-87 Identity = 183/386 (47.41%), Postives = 239/386 (61.92%), Query Frame = 2
Query: 1271 PAVCDSLAALKPTQIVGGEQSLFCVTGDGKVYATGYGNSSRLGLGIIESVNTPRLIESLQHIMIKKVSVHSGGRHCLALSSDGEIFSWGEGDDGKLGHGNRVSCGHPKLIDSFRGKL----MTDISAGGSHSAALSDTGELYTWGKGRYGRLGHGDGEDQLRPKMVEALKDYCVVDIACGSGDAQTLCITNNDQVWSWXXXXXXXXXXXXXXXCKVPLLIEELSGKSVIHVECGSQFSMALTRNGALYTWGKGDYYRLGHGSEEHVRRPKRVSALELKIVTSICCGSLHCVATTSDGEIYCWGDNDEGQLGDNTTNAGHEPKLCTALQSKKIDQIACGSAHTIAWSTCENGERTIPNNIPIEYNYLHELSMTTIRNRALLLHSFSK 2416
P C+ LA L TQI E+ ++ +G+VY Y NS L P+L++ L I K++ HS G H LAL++ GE++SWG GD G+LGHG+ V PK+I +F GK + I+ G ++SAA++ GELYTWG+G YGRLGHG ED+ P +V LK V+D+ACGSGDAQTL +T N QVWSWGDGDYGKLGRGGSDGCK P LIE+L V+ V CGSQFS+ALT++G +Y+WGKGD RLGHG+EEHVR PK + L+ K V + GS HC+A T D E++ WG ND+ Q D EP L +K I IACG A + AWS+C E +I +P ++ ++ T LLL S+
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAY-NSDTLA---------PQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFAWSSCS--EWSIGLRVP----FVVDICSMTFEQLDLLLRQVSE 811 HSP 4 Score: 145.591 bits (366), Expect = 1.014e-34 Identity = 88/262 (33.59%), Postives = 140/262 (53.44%), Query Frame = 2
Query: 1199 GTIYGWGHNHRGQLGGIDGTRIKRPAVCDSLAALKPTQIVGGEQSLFCVTGDGKVYATGYGNSSRLGLGIIESVNTPRLIESLQHIMIKKVSVHSGGRHCLALSSDGEIFSWGEGDDGKLGHGNRVSCGHPKLIDSFRGKLMTDISAGGSHSAALSDTGELYTWGKGRYGRLGHGDGEDQLRPKMVEALKDYCVVDIACGSGDAQTLCITNNDQVWSWXXXXXXXXXXXXXXXCKVPLLIEELSGKSVIHVECGSQFSMALT 1984
G ++ WG G+LG +P + ++L + I G +T G++Y G G RLG G + P++++ L + +V+ S LAL+ +G +FSWG+GD GKLG G C P+ I+ G+ + I G S AL+ +G ++TWGKG Y RLGHG +P++VE L+ +V +A G+ L +T++ QV++WGD D+G+ G G + + P L++ L G+ + V CGS S+A T
Sbjct: 3066 GKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGA--LHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVAWT 3325 The following BLAST results are available for this feature:
BLAST of TCONS_00049183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.