TCONS_00049141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049141
Unique NameTCONS_00049141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049141 ID=TCONS_00049141|Name=TCONS_00049141|organism=Clytia hemisphaerica|type=transcript|length=1869bp
TTACTTGCCACTGGGCTCCTTTTAGTTTGGTTTACTTAATTATTCTTTTT
TGGggtataaaaaaaactttcttaggaaaatgataTAACATTAAGTTTTG
GGTGAAAGAAAAACctgtagaaataaagaattacatttgaaaattcttta
ctTTTAGGATTTTCACTGGATATTCTGGATGATATTCCTGATTCTGTTAT
GGTGGCAAATAGTGGCTCAGAGAATGACATCAATTCAAATGGAGATTTAA
TGGCAGGGCTGGAACCCTTTAATTCTGGAACTGATAACTCAATTCAACAA
AATGGACCAACATCACTTTCCGCATCTCTCAGCAAGGGCGGTGCTGTAAA
TGCTGGAAATGATCAAGTCAATGCCAATGCCAAAAGTCTCGGGATGAGGA
GTCCAAGACCAAATGTTGGGGGGAATCTACAACAAAATTTGCCTCCCAAT
AATGGACCTATAAGTACAGCTGGAATGCCCACTCCTCCAACTCCAATGGT
AAATCAAATCAGAAATCCACAGCTACCTGTCAGTGCTAGTATCGCAAact
caaattcaaatttcctgAATAACAATAGTAGTTCTATAAATAATACGCAA
TTTAGTAACAATATAATATCTTCAATGCCAAATAATTTCAATCCAATGTC
TTCAGCCTCTACTATGGCCTACAGTGGCAATTTACCATCATCAATAGCTT
ACACTGGAGGAAATTTCAGTAACCAGTCACTATCTTCTTCAATGCCAAAC
TCAAACAACAACATTTTCTCCAACCCAATGAACAATATGAATAATAACTC
AAATGCGATGATGCCATCCAATTCCATGTTTAATGGTCAAATGAATATAA
GCACACCTATGAATGCCATTggtcaaaatgttcaaaatatgATGGCAAAT
AGAGGACAAAATTTTAATGCTAATCCGGCTGGAGGTAACATTGGAATGAT
GATTAATAACCGCATGTACAACATGCAACAATATCGTATGAATGGACCTA
AAAACATTGGAAATTTTCCAATGAATTTTCCACCAAACATGATCAATCAG
ATGATGGATCCCTCCCAAGAAGGAATGATGAACATGAATAGAATGCCTGG
ACAAATACGTGGAAATTTTGACATTAATAATATGAACAATCAAATTGGAA
ACAATATTATGAATGCCAATTCTGGTTTTCAACAGTCAAATATTGCAAAC
AACCAAATTGGAAATCAAATGAATCGACCACCACCTAATCAAAATGTCTT
GGATGCAAATTTGAATAACCAAAACCAACTTCCTAACATTCCTGGAAATG
ACCCATCTATGAACAATATCCCAACTCAGaattcaaacaatcaaaacaac
CCCAATCAGCACCCAAACACTACAGACCCAGAGAAAAAGAGACTCATACA
ACAGCAGTTGGTTTTACTACTTCATGCACACAAATGTCAACGAAGAGAGC
AACAAGCAAATGGAGACTACAAACCGTGTGATCTGCCACATTGTAGAACA
ATGAAAGGCGTATTAAACCACATGACTGTTTGTAAAGCTGGAAAATCTTG
TCAAGTTGCTCATTGCGCATCATCTCGACAAATCATCACGCATTGGAAGT
TTTGTACAAGAACTGACTGTCCAGTTTGCTTACCATTGAAAAATGGACCA
CATCCAACAAACAGAAGGGTTCCAAATCAAAACGATTTGAAGAAAATTGC
TGGTAATAatgaacaacaacaacaaccccAGCAAGCTCAACAGCCAATGA
TGAATAACCAGCCAAATACTACAAACAATACTCCAAGTCAACCTGTGACC
AAGGACAAGGAAGGTTGGCATAAATCTGTCACGGAAAGCCAGCGTAAACA
TTTGGTTGATAGACTGTAA
Run BLAST on NCBI

protein sequence of TCONS_00049141-protein

>TCONS_00049141-protein ID=TCONS_00049141-protein|Name=TCONS_00049141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MVANSGSENDINSNGDLMAGLEPFNSGTDNSIQQNGPTSLSASLSKGGAV
NAGNDQVNANAKSLGMRSPRPNVGGNLQQNLPPNNGPISTAGMPTPPTPM
VNQIRNPQLPVSASIANSNSNFLNNNSSSINNTQFSNNIISSMPNNFNPM
SSASTMAYSGNLPSSIAYTGGNFSNQSLSSSMPNSNNNIFSNPMNNMNNN
SNAMMPSNSMFNGQMNISTPMNAIGQNVQNMMANRGQNFNANPAGGNIGM
MINNRMYNMQQYRMNGPKNIGNFPMNFPPNMINQMMDPSQEGMMNMNRMP
GQIRGNFDINNMNNQIGNNIMNANSGFQQSNIANNQIGNQMNRPPPNQNV
LDANLNNQNQLPNIPGNDPSMNNIPTQNSNNQNNPNQHPNTTDPEKKRLI
QQQLVLLLHAHKCQRREQQANGDYKPCDLPHCRTMKGVLNHMTVCKAGKS
CQVAHCASSRQIITHWKFCTRTDCPVCLPLKNGPHPTNRRVPNQNDLKKI
AGNNEQQQQPQQAQQPMMNNQPNTTNNTPSQPVTKDKEGWHKSVTESQRK
HLVDRL
Run BLAST on NCBI

transcript from alignment at scaffold_153:124837..127395+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049141 ID=TCONS_00049141|Name=TCONS_00049141|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at scaffold_153:124837..127395+ (Clytia hemisphaerica)
TTACTTGCCACTGGGCTCCTTTTAGTTTGGTTTACTTAATTATTCTTTTT
TGGggtataaaaaaaactttcttaggaaaatgataTAACATTAAGTTTTG
GGTGAAAGAAAAACctgtagaaataaagaattacatttgaaaattcttta
ctTTTAGGATTTTCACTGGATATTCTGGATGATATTCCTGATTCTGTTAT
GGTGGCAAATAGTGGCTCAGAGAATGACATCAATTCAAATGGAGATTTAA
TGGCAGGGCTGGAACCCTTTAATTCTGGAACTGATAACTCAATTCAACAA
AATGGACCAACATCACTTTCCGCATCTCTCAGCAAGGGCGGTGCTGTAAA
TGCTGGAAATGATCAAGTCAATGCCAATGCCAAAAGTCTCGGGATGAGGA
GTCCAAGACCAAATGTTGGGGGGAATCTACAACAAAATTTGCCTCCCAAT
AATGGACCTATAAGTACAGCTGGAATGCCCACTCCTCCAACTCCAATGGT
AAATCAAATCAGAAATCCACAGCTACCTGTCAGTGCTAGTATCGCAAact
caaattcaaatttcctgAATAACAATAGTAGTTCTATAAATAATACGCAA
TTTAGTAACAATATAATATCTTCAATGCCAAATAATTTCAATCCAATGTC
TTCAGCCTCTACTATGGCCTACAGTGGCAATTTACCATCATCAATAGCTT
ACACTGGAGGAAATTTCAGTAACCAGTCACTATCTTCTTCAATGCCAAAC
TCAAACAACAACATTTTCTCCAACCCAATGAACAATATGAATAATAACTC
AAATGCGATGATGCCATCCAATTCCATGTTTAATGGTCAAATGAATATAA
GCACACCTATGAATGCCATTggtcaaaatgttcaaaatatgATGGCAAAT
AGAGGACAAAATTTTAATGCTAATCCGGCTGGAGGTAACATTGGAATGAT
GATTAATAACCGCATGTACAACATGCAACAATATCGTATGAATGGACCTA
AAAACATTGGAAATTTTCCAATGAATTTTCCACCAAACATGATCAATCAG
ATGATGGATCCCTCCCAAGAAGGAATGATGAACATGAATAGAATGGTTTG
TGcacaattttcatctttttatcaAAGGCGCAGAGCATTAATGTGACCTT
TGTGTGTTTTGAAGGccaaaaaatagatttttttataaaacaacaAAGTA
TGCCTCACGTTTTGAAAACTTTGTAATTGCTTTTCCTTTAGTTAGATTTT
TAATTATATAATTAATCATCAGCTTTTTGGCAACACTGCTTTAGTGATAA
TATATTTGTCCAAAGAACCCTTTTACTTTGCGTaataatctttataaatt
tttttttttatcaccAGCCTGGACAAATACGTGGAAATTTTGACATTAAT
AATATGAACAATCAAATTGGAAACAATATTATGAATGCCAATTCTGGTTT
TCAACAGTCAAATATTGCAAACAACCAAATTGGAAATCAAATGAATCGAC
CACCACCTAATCAAAATGTCTTGGATGCAAATTTGAATAACCAAAACCAA
CTTCCTAACATTCCTGGAAATGACCCATCTATGGTAAGCACATGATCTGA
GTGTAAAAGGAAATTTATGTATTAATCATCTTTAAAGTACCATAGAAAGT
TtggaaatcaaatcaaaaattgaatattgctcTCTTTTTAGAACAATATC
CCAACTCAGaattcaaacaatcaaaacaacCCCAATCAGCACCCAAACAC
TACAGACCCAGAGAAAAAGAGACTCATACAACAGCAGTTGGTTTTACTAC
TTCATGCACACAAATGTCAACGAAGAGAGCAACAAGCAAATGGAGACTAC
AAACCGTGTGATCTGCCACATTGTAGAACAATGAAAGGCGTATTAAACCA
CATGACTGTTTGTAAAGCTGGAAAATCTTGTCAAGGTAGGAGATAATACT
TAAATTGTACCTAAAAAGCAAAGAAACCAAAGAGTTTCAACAAAAATTAC
CTTCAGGAACTTTTTTTGCACATTTTCGTGAATATGGTATGTATTTAAAA
ATGCTAGAGCAGATCAGATCATATTCATATAGTACAAGAatgcaacaaaa
taatcataaaatTGCTTTTCTTTTTAGTTGCTCATTGCGCATCATCTCGA
CAAATCATCACGCATTGGAAGTTTTGTACAAGAACTGACTGTCCAGTTTG
CTTACCATTGAAAAATGGACCACATCCAACAAACAGAAGGGTTCCAAATC
AAAACGATTTGAAGAAAATTGCTGGTAATAatgaacaacaacaacaaccc
cAGCAAGCTCAACAGCCAATGATGAATAACCAGCCAAATACTACAAAGTG
AGTTCTTCAGCCAAGCTTAATTTGTACATCGTTTTGTTAGCTTTAATTGT
catgaaataatttattttggTACATGAGCAAATTCgtgattaccaaaaaa
attcttttattatAGCAATACTCCAAGTCAACCTGTGACCAAGGACAAGG
AAGGTTGGCATAAATCTGTCACGGAAAGCCAGCGTAAACATTTGGTTGAT
AGACTGTAA

Coding sequence (CDS) from alignment at scaffold_153:124837..127395+

>TCONS_00049141 ID=TCONS_00049141|Name=TCONS_00049141|organism=Clytia hemisphaerica|type=CDS|length=8355bp|location=Sequence derived from alignment at scaffold_153:124837..127395+ (Clytia hemisphaerica)
ATGGTGGCAAATAGTGGCTCAGAGAATGACATCAATTCAAATGGAGATTT
AATGGCAGGGCTGGAACCCTTTAATTCTGGAACTGATAACTCAATTCAAC
AAAATGGACCAACATCACTTTCCGCATCTCTCAGCAAGGGCGGTGCTGTA
AATGCTGGAAATGATCAAGTCAATGCCAATGCCAAAAGTCTCGGGATGAG
GAGTCCAAGACCAAATGTTGGGGGGAATCTACAACAAAATTTGCCTCCCA
ATAATGGACCTATAAGTACAGCTGGAATGCCCACTCCTCCAACTCCAATG
GTAAATCAAATCAGAAATCCACAGCTACCTGTCAGTGCTAGTATCGCAAa
ctcaaattcaaatttcctgAATAACAATAGTAGTTCTATAAATAATACGC
AATTTAGTAACAATATAATATCTTCAATGCCAAATAATTTCAATCCAATG
TCTTCAGCCTCTACTATGGCCTACAGTGGCAATTTACCATCATCAATAGC
TTACACTGGAGGAAATTTCAGTAACCAGTCACTATCTTCTTCAATGCCAA
ACTCAAACAACAACATTTTCTCCAACCCAATGAACAATATGAATAATAAC
TCAAATGCGATGATGCCATCCAATTCCATGTTTAATGGTCAAATGAATAT
AAGCACACCTATGAATGCCATTggtcaaaatgttcaaaatatgATGGCAA
ATAGAGGACAAAATTTTAATGCTAATCCGGCTGGAGGTAACATTGGAATG
ATGATTAATAACCGCATGTACAACATGCAACAATATCGTATGAATGGACC
TAAAAACATTGGAAATTTTCCAATGAATTTTCCACCAAACATGATCAATC
AGATGATGGATCCCTCCCAAGAAGGAATGATGAACATGAATAGAATGCCT
GGACAAATACGTGGAAATTTTGACATTAATAATATGAACAATCAAATTGG
AAACAATATTATGAATGCCAATTCTGGTTTTCAACAGTCAAATATTGCAA
ACAACCAAATTGGAAATCAAATGAATCGACCACCACCTAATCAAAATGTC
TTGGATGCAAATTTGAATAACCAAAACCAACTTCCTAACATTCCTGGAAA
TGACCCATCTATGAACAATATCCCAACTCAGaattcaaacaatcaaaaca
acCCCAATCAGCACCCAAACACTACAGACCCAGAGAAAAAGAGACTCATA
CAACAGCAGTTGGTTTTACTACTTCATGCACACAAATGTCAACGAAGAGA
GCAACAAGCAAATGGAGACTACAAACCGTGTGATCTGCCACATTGTAGAA
CAATGAAAGGCGTATTAAACCACATGACTGTTTGTAAAGCTGGAAAATCT
TGTCAAGTTGCTCATTGCGCATCATCTCGACAAATCATCACGCATTGGAA
GTTTTGTACAAGAACTGACTGTCCAGTTTGCTTACCATTGAAAAATGGAC
CACATCCAACAAACAGAAGGGTTCCAAATCAAAACGATTTGAAGAAAATT
GCTGGTAATAatgaacaacaacaacaaccccAGCAAGCTCAACAGCCAAT
GATGAATAACCAGCCAAATACTACAAACAATACTCCAAGTCAACCTGTGA
CCAAGGACAAGGAAGGTTGGCATAAATCTGTCACGGAAAGCCAGCGTAAA
CATTTGGTTGATAGACTGTAAATGGTGGCAAATAGTGGCTCAGAGAATGA
CATCAATTCAAATGGAGATTTAATGGCAGGGCTGGAACCCTTTAATTCTG
GAACTGATAACTCAATTCAACAAAATGGACCAACATCACTTTCCGCATCT
CTCAGCAAGGGCGGTGCTGTAAATGCTGGAAATGATCAAGTCAATGCCAA
TGCCAAAAGTCTCGGGATGAGGAGTCCAAGACCAAATGTTGGGGGGAATC
TACAACAAAATTTGCCTCCCAATAATGGACCTATAAGTACAGCTGGAATG
CCCACTCCTCCAACTCCAATGGTAAATCAAATCAGAAATCCACAGCTACC
TGTCAGTGCTAGTATCGCAAactcaaattcaaatttcctgAATAACAATA
GTAGTTCTATAAATAATACGCAATTTAGTAACAATATAATATCTTCAATG
CCAAATAATTTCAATCCAATGTCTTCAGCCTCTACTATGGCCTACAGTGG
CAATTTACCATCATCAATAGCTTACACTGGAGGAAATTTCAGTAACCAGT
CACTATCTTCTTCAATGCCAAACTCAAACAACAACATTTTCTCCAACCCA
ATGAACAATATGAATAATAACTCAAATGCGATGATGCCATCCAATTCCAT
GTTTAATGGTCAAATGAATATAAGCACACCTATGAATGCCATTggtcaaa
atgttcaaaatatgATGGCAAATAGAGGACAAAATTTTAATGCTAATCCG
GCTGGAGGTAACATTGGAATGATGATTAATAACCGCATGTACAACATGCA
ACAATATCGTATGAATGGACCTAAAAACATTGGAAATTTTCCAATGAATT
TTCCACCAAACATGATCAATCAGATGATGGATCCCTCCCAAGAAGGAATG
ATGAACATGAATAGAATGCCTGGACAAATACGTGGAAATTTTGACATTAA
TAATATGAACAATCAAATTGGAAACAATATTATGAATGCCAATTCTGGTT
TTCAACAGTCAAATATTGCAAACAACCAAATTGGAAATCAAATGAATCGA
CCACCACCTAATCAAAATGTCTTGGATGCAAATTTGAATAACCAAAACCA
ACTTCCTAACATTCCTGGAAATGACCCATCTATGAACAATATCCCAACTC
AGaattcaaacaatcaaaacaacCCCAATCAGCACCCAAACACTACAGAC
CCAGAGAAAAAGAGACTCATACAACAGCAGTTGGTTTTACTACTTCATGC
ACACAAATGTCAACGAAGAGAGCAACAAGCAAATGGAGACTACAAACCGT
GTGATCTGCCACATTGTAGAACAATGAAAGGCGTATTAAACCACATGACT
GTTTGTAAAGCTGGAAAATCTTGTCAAGTTGCTCATTGCGCATCATCTCG
ACAAATCATCACGCATTGGAAGTTTTGTACAAGAACTGACTGTCCAGTTT
GCTTACCATTGAAAAATGGACCACATCCAACAAACAGAAGGGTTCCAAAT
CAAAACGATTTGAAGAAAATTGCTGGTAATAatgaacaacaacaacaacc
ccAGCAAGCTCAACAGCCAATGATGAATAACCAGCCAAATACTACAAACA
ATACTCCAAGTCAACCTGTGACCAAGGACAAGGAAGGTTGGCATAAATCT
GTCACGGAAAGCCAGCGTAAACATTTGGTTGATAGACTGTAAATGGTGGC
AAATAGTGGCTCAGAGAATGACATCAATTCAAATGGAGATTTAATGGCAG
GGCTGGAACCCTTTAATTCTGGAACTGATAACTCAATTCAACAAAATGGA
CCAACATCACTTTCCGCATCTCTCAGCAAGGGCGGTGCTGTAAATGCTGG
AAATGATCAAGTCAATGCCAATGCCAAAAGTCTCGGGATGAGGAGTCCAA
GACCAAATGTTGGGGGGAATCTACAACAAAATTTGCCTCCCAATAATGGA
CCTATAAGTACAGCTGGAATGCCCACTCCTCCAACTCCAATGGTAAATCA
AATCAGAAATCCACAGCTACCTGTCAGTGCTAGTATCGCAAactcaaatt
caaatttcctgAATAACAATAGTAGTTCTATAAATAATACGCAATTTAGT
AACAATATAATATCTTCAATGCCAAATAATTTCAATCCAATGTCTTCAGC
CTCTACTATGGCCTACAGTGGCAATTTACCATCATCAATAGCTTACACTG
GAGGAAATTTCAGTAACCAGTCACTATCTTCTTCAATGCCAAACTCAAAC
AACAACATTTTCTCCAACCCAATGAACAATATGAATAATAACTCAAATGC
GATGATGCCATCCAATTCCATGTTTAATGGTCAAATGAATATAAGCACAC
CTATGAATGCCATTggtcaaaatgttcaaaatatgATGGCAAATAGAGGA
CAAAATTTTAATGCTAATCCGGCTGGAGGTAACATTGGAATGATGATTAA
TAACCGCATGTACAACATGCAACAATATCGTATGAATGGACCTAAAAACA
TTGGAAATTTTCCAATGAATTTTCCACCAAACATGATCAATCAGATGATG
GATCCCTCCCAAGAAGGAATGATGAACATGAATAGAATGCCTGGACAAAT
ACGTGGAAATTTTGACATTAATAATATGAACAATCAAATTGGAAACAATA
TTATGAATGCCAATTCTGGTTTTCAACAGTCAAATATTGCAAACAACCAA
ATTGGAAATCAAATGAATCGACCACCACCTAATCAAAATGTCTTGGATGC
AAATTTGAATAACCAAAACCAACTTCCTAACATTCCTGGAAATGACCCAT
CTATGAACAATATCCCAACTCAGaattcaaacaatcaaaacaacCCCAAT
CAGCACCCAAACACTACAGACCCAGAGAAAAAGAGACTCATACAACAGCA
GTTGGTTTTACTACTTCATGCACACAAATGTCAACGAAGAGAGCAACAAG
CAAATGGAGACTACAAACCGTGTGATCTGCCACATTGTAGAACAATGAAA
GGCGTATTAAACCACATGACTGTTTGTAAAGCTGGAAAATCTTGTCAAGT
TGCTCATTGCGCATCATCTCGACAAATCATCACGCATTGGAAGTTTTGTA
CAAGAACTGACTGTCCAGTTTGCTTACCATTGAAAAATGGACCACATCCA
ACAAACAGAAGGGTTCCAAATCAAAACGATTTGAAGAAAATTGCTGGTAA
TAatgaacaacaacaacaaccccAGCAAGCTCAACAGCCAATGATGAATA
ACCAGCCAAATACTACAAACAATACTCCAAGTCAACCTGTGACCAAGGAC
AAGGAAGGTTGGCATAAATCTGTCACGGAAAGCCAGCGTAAACATTTGGT
TGATAGACTGTAAATGGTGGCAAATAGTGGCTCAGAGAATGACATCAATT
CAAATGGAGATTTAATGGCAGGGCTGGAACCCTTTAATTCTGGAACTGAT
AACTCAATTCAACAAAATGGACCAACATCACTTTCCGCATCTCTCAGCAA
GGGCGGTGCTGTAAATGCTGGAAATGATCAAGTCAATGCCAATGCCAAAA
GTCTCGGGATGAGGAGTCCAAGACCAAATGTTGGGGGGAATCTACAACAA
AATTTGCCTCCCAATAATGGACCTATAAGTACAGCTGGAATGCCCACTCC
TCCAACTCCAATGGTAAATCAAATCAGAAATCCACAGCTACCTGTCAGTG
CTAGTATCGCAAactcaaattcaaatttcctgAATAACAATAGTAGTTCT
ATAAATAATACGCAATTTAGTAACAATATAATATCTTCAATGCCAAATAA
TTTCAATCCAATGTCTTCAGCCTCTACTATGGCCTACAGTGGCAATTTAC
CATCATCAATAGCTTACACTGGAGGAAATTTCAGTAACCAGTCACTATCT
TCTTCAATGCCAAACTCAAACAACAACATTTTCTCCAACCCAATGAACAA
TATGAATAATAACTCAAATGCGATGATGCCATCCAATTCCATGTTTAATG
GTCAAATGAATATAAGCACACCTATGAATGCCATTggtcaaaatgttcaa
aatatgATGGCAAATAGAGGACAAAATTTTAATGCTAATCCGGCTGGAGG
TAACATTGGAATGATGATTAATAACCGCATGTACAACATGCAACAATATC
GTATGAATGGACCTAAAAACATTGGAAATTTTCCAATGAATTTTCCACCA
AACATGATCAATCAGATGATGGATCCCTCCCAAGAAGGAATGATGAACAT
GAATAGAATGCCTGGACAAATACGTGGAAATTTTGACATTAATAATATGA
ACAATCAAATTGGAAACAATATTATGAATGCCAATTCTGGTTTTCAACAG
TCAAATATTGCAAACAACCAAATTGGAAATCAAATGAATCGACCACCACC
TAATCAAAATGTCTTGGATGCAAATTTGAATAACCAAAACCAACTTCCTA
ACATTCCTGGAAATGACCCATCTATGAACAATATCCCAACTCAGaattca
aacaatcaaaacaacCCCAATCAGCACCCAAACACTACAGACCCAGAGAA
AAAGAGACTCATACAACAGCAGTTGGTTTTACTACTTCATGCACACAAAT
GTCAACGAAGAGAGCAACAAGCAAATGGAGACTACAAACCGTGTGATCTG
CCACATTGTAGAACAATGAAAGGCGTATTAAACCACATGACTGTTTGTAA
AGCTGGAAAATCTTGTCAAGTTGCTCATTGCGCATCATCTCGACAAATCA
TCACGCATTGGAAGTTTTGTACAAGAACTGACTGTCCAGTTTGCTTACCA
TTGAAAAATGGACCACATCCAACAAACAGAAGGGTTCCAAATCAAAACGA
TTTGAAGAAAATTGCTGGTAATAatgaacaacaacaacaaccccAGCAAG
CTCAACAGCCAATGATGAATAACCAGCCAAATACTACAAACAATACTCCA
AGTCAACCTGTGACCAAGGACAAGGAAGGTTGGCATAAATCTGTCACGGA
AAGCCAGCGTAAACATTTGGTTGATAGACTGTAAATGGTGGCAAATAGTG
GCTCAGAGAATGACATCAATTCAAATGGAGATTTAATGGCAGGGCTGGAA
CCCTTTAATTCTGGAACTGATAACTCAATTCAACAAAATGGACCAACATC
ACTTTCCGCATCTCTCAGCAAGGGCGGTGCTGTAAATGCTGGAAATGATC
AAGTCAATGCCAATGCCAAAAGTCTCGGGATGAGGAGTCCAAGACCAAAT
GTTGGGGGGAATCTACAACAAAATTTGCCTCCCAATAATGGACCTATAAG
TACAGCTGGAATGCCCACTCCTCCAACTCCAATGGTAAATCAAATCAGAA
ATCCACAGCTACCTGTCAGTGCTAGTATCGCAAactcaaattcaaatttc
ctgAATAACAATAGTAGTTCTATAAATAATACGCAATTTAGTAACAATAT
AATATCTTCAATGCCAAATAATTTCAATCCAATGTCTTCAGCCTCTACTA
TGGCCTACAGTGGCAATTTACCATCATCAATAGCTTACACTGGAGGAAAT
TTCAGTAACCAGTCACTATCTTCTTCAATGCCAAACTCAAACAACAACAT
TTTCTCCAACCCAATGAACAATATGAATAATAACTCAAATGCGATGATGC
CATCCAATTCCATGTTTAATGGTCAAATGAATATAAGCACACCTATGAAT
GCCATTggtcaaaatgttcaaaatatgATGGCAAATAGAGGACAAAATTT
TAATGCTAATCCGGCTGGAGGTAACATTGGAATGATGATTAATAACCGCA
TGTACAACATGCAACAATATCGTATGAATGGACCTAAAAACATTGGAAAT
TTTCCAATGAATTTTCCACCAAACATGATCAATCAGATGATGGATCCCTC
CCAAGAAGGAATGATGAACATGAATAGAATGCCTGGACAAATACGTGGAA
ATTTTGACATTAATAATATGAACAATCAAATTGGAAACAATATTATGAAT
GCCAATTCTGGTTTTCAACAGTCAAATATTGCAAACAACCAAATTGGAAA
TCAAATGAATCGACCACCACCTAATCAAAATGTCTTGGATGCAAATTTGA
ATAACCAAAACCAACTTCCTAACATTCCTGGAAATGACCCATCTATGAAC
AATATCCCAACTCAGaattcaaacaatcaaaacaacCCCAATCAGCACCC
AAACACTACAGACCCAGAGAAAAAGAGACTCATACAACAGCAGTTGGTTT
TACTACTTCATGCACACAAATGTCAACGAAGAGAGCAACAAGCAAATGGA
GACTACAAACCGTGTGATCTGCCACATTGTAGAACAATGAAAGGCGTATT
AAACCACATGACTGTTTGTAAAGCTGGAAAATCTTGTCAAGTTGCTCATT
GCGCATCATCTCGACAAATCATCACGCATTGGAAGTTTTGTACAAGAACT
GACTGTCCAGTTTGCTTACCATTGAAAAATGGACCACATCCAACAAACAG
AAGGGTTCCAAATCAAAACGATTTGAAGAAAATTGCTGGTAATAatgaac
aacaacaacaaccccAGCAAGCTCAACAGCCAATGATGAATAACCAGCCA
AATACTACAAACAATACTCCAAGTCAACCTGTGACCAAGGACAAGGAAGG
TTGGCATAAATCTGTCACGGAAAGCCAGCGTAAACATTTGGTTGATAGAC
TGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031229XLOC_031229Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049141-proteinTCONS_00049141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049141-exon-scaffold_153-1491911889:124837..125931TCONS_00049141-exon-scaffold_153-1491911889:124837..125931Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1510915933:124837..125931TCONS_00049141-exon-scaffold_153-1510915933:124837..125931Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1575043694:124837..125931TCONS_00049141-exon-scaffold_153-1575043694:124837..125931Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1491911889:126204..126419TCONS_00049141-exon-scaffold_153-1491911889:126204..126419Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1510915933:126204..126419TCONS_00049141-exon-scaffold_153-1510915933:126204..126419Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1575043694:126204..126419TCONS_00049141-exon-scaffold_153-1575043694:126204..126419Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1491911889:126528..126771TCONS_00049141-exon-scaffold_153-1491911889:126528..126771Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1510915933:126528..126771TCONS_00049141-exon-scaffold_153-1510915933:126528..126771Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1575043694:126528..126771TCONS_00049141-exon-scaffold_153-1575043694:126528..126771Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1491911889:126964..127183TCONS_00049141-exon-scaffold_153-1491911889:126964..127183Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1510915933:126964..127183TCONS_00049141-exon-scaffold_153-1510915933:126964..127183Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1575043694:126964..127183TCONS_00049141-exon-scaffold_153-1575043694:126964..127183Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1491911889:127302..127395TCONS_00049141-exon-scaffold_153-1491911889:127302..127395Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1510915933:127302..127395TCONS_00049141-exon-scaffold_153-1510915933:127302..127395Clytia hemisphaericaexon
TCONS_00049141-exon-scaffold_153-1575043694:127302..127395TCONS_00049141-exon-scaffold_153-1575043694:127302..127395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:124837..127395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.18894	3.91815	8.61471	10.4405	91.6812	65.638	40.6114	52.9397	17.1634	24.9628	23.7315	20.9947	24.7891	27.4708	16.7838	21.8926	19.9587	24.338	19.4248	23.8214	27.0489	27.788	8.5522	17.7114	29.3483	31.0257	30.0674	24.1447	22.5353	20.9781
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000197Znf_TAZ
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003712transcription cofactor activity
GO:0004402histone acetyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0003712 transcription cofactor activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00049141 vs. Swiss-Prot (Human)
Match: CBP (CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 2.092e-35
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1 
Query: 1375 DPEKKRLIQQQLVLLLHAHKCQRREQQANGDYKPCDLPHCRTMKGVLNHMTVCKAGKSCQVAHCASSRQIITHWKFCTRTDCPVCLPLKNG 1647
            DPEK++LIQQQLVLLLHAHKCQRREQ ANG+ + C LPHCRTMK VLNHMT C+AGK+CQVAHCASSRQII+HWK CTR DCPVCLPLKN 
Sbjct:  347 DPEKRKLIQQQLVLLLHAHKCQRREQ-ANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWKNCTRHDCPVCLPLKNA 436
The following BLAST results are available for this feature:
BLAST of TCONS_00049141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBP2.092e-3582.42CREB-binding protein OS=Homo sapiens GN=CREBBP PE=... [more]
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