TCONS_00049140 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049140
Unique Name	TCONS_00049140
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4645

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_153:28858..44082+

transcript sequence

>TCONS_00049140 ID=TCONS_00049140|Name=TCONS_00049140|organism=Clytia hemisphaerica|type=transcript|length=4645bp
TGCGATTCAAAATAGTTCCAACTGATGAGTACATTACTGAGCtcaatgaa
gaagaagatgaagaagaagatgaagaccCTGACATGATTGACATCGGAAA
ACAATTTTATTTGCATAAAAGTATTGCTAACCAATTGTATGATTACCAAA
AAGAAGGTGTTCTTTGGTTCTGGAAACTTTACAATCGTAAACAAGGCGGC
ATCCTTGGGGATGATATGGGACTTGGAAAAACTATTCAAGTCATTTCGTT
CATGGCTGGTATGTTTGATGCAGAATTGATAAAGAATGCAATTATTGTTG
CCCCTCTTTCCATCCTTGTCAATTGGGAAAAGGAATTTGcgaaatgGGCA
GGAGGGATCCGTATCAAACCATTTCATGGAACTGCTAAGAAGCAAAGAAT
GAAGAACcttcataaaattcaaaataatgatGGAATATTGATTACTACCT
ACGGTATGGTAGTATCAAATATTAACTCGTTGTGTGTCGACGAAAATGGT
GATCCTTTCGAATGGgATTACTTGATTTTGGATGAGGGGCATAAGATCAA
GAATGCGACAAAAACGAGCAAATGTGTTCGAAATATTCCATCTAAATATC
ATTATATCCTAACTGGAACGCCTGTTCAAAATAATCTGGGTGAGATGTGG
TCGTTATTTGATTTCACTCAACAAGGACAACTACTGGGAACAAGGAAGAC
CTTTGATACTGAGTTTCAAAAACCTATTGTTAGGGCTAGAGAGAAAGATG
CAAACGAGTACCAGCAACAAGTTGGCAACAAGATCGCTGAAACATTACGT
AAACTGATTGCACCATATTTTTTGAGGAGAACAAAAGCTGAAGTGTTCAA
CCTTAACAAACTTGATGATGAACCATCTACTGAAGCTaataaagaaaatg
ttgatcacACTGATGGCAAAAAGAAGAAACAGCCAAAAGCACCCGAACTT
AATACAAGGAAAAACGATTTGATCATTTGGGTTTATCTCTCCAAACTTCA
ATTGAAATTGTATCAAGGTTTCGTCAACTCAGAACGTGTCAAAGAGtgtT
TGGTAACCACAAGAAGTCCTTTGGCTGAATTGAATTTGTTGAAGAAAATA
TCTGATCATCCACGATTGCAATCAACACTTTCTAAATTGATGACCAGTTC
AGCTGAACAACAAACGCGtcGTGATTGTGGTTTACCCGACGACCAATCAG
ATGAAACGTCCTCCAGTTCAATGGAAGAAGAAGCAGTTGATGGGCCACCT
GTCGAAAAATTGATTCAAGATTCCGGAAAAATGGTCTTCCTGGCTCAAct
tatgaaaaatttgaaagcagAAAAACACAGGACAATCATTTTTAGCCAGT
CAAGAAAAATGTTGGATATCATACAGAAGACTTTGCTGAGCATGGATCAC
AAATTGTTACGAATTGACGGTACCATTAGCAACCCATTGGAGCGTGAAAA
GATTATCCAACAGTTTCAATCGGATCGTTCCTTCACTGCGATGTTGATGA
CCACACAGgttgGAAGCGTCGGTTTAACGTTGACCAGTGCTGATAGACTT
ATCATTTttgATCCTAGTTGGAACCCAGGAACTGATGCACAAGCAGTTGA
TAGggTTTATCGTGTTGGACAAAAGAAAGATGTTGTGATTTATCGATTGA
TAACGTGTGGCTCGATCGAGGAGAAAATCTATCGAAAACAGATTTTCAAG
AATGCAGTCATGAAACAAGCAACTGGATCGTCTAATAACCCTTACAGATA
TTTCACGAATCATGAACTGCGAGAACTTTTCGTTTTGGACGACCCCACCC
AATCAACAACACAACAACAATTGAAAGAACTGCACCAGAAACCAACCAAC
ACACAACAGGGCTTCCAAAACCATCTCCAATTTTTGCAAGAACTAGATTG
TATTTACGGTGTCAGTCATCACGATCAATTGTTTTCACAAGAAGCGAGAA
ACACTCAAACCAATGAGTATGAGGATGCTATCAAAAAGCagGTGAACAAC
GCAGAACGCCGTGTACGTGAAGAGTTCAACGACGTCGATTTCTCGCCACG
AAAATATAAACCACGCTCTCATGATGGTGAGGATACTGAATACATCAAGC
TTGGCCGCCCACCGCCATCGCCCGCGACAAATAGAGATATTCAGAACCTT
GATATTAGCATGGGAAATTTGAAACTGaaagagaatgaaagtgaagcGAG
TTTCACAAGTGAAGGAAGCAACACTCAGAGCTTTGATAGCAGAGTTTTGG
ATCGATCCTCATTGTCACAAAATCAACAAAGCTCTTACGTAGAAAGCCAA
AGCGATAATACATCAATACGGGTAGAGAGCaatgtgacgtcacaaaatgA
AACAGGCGAAGAAGCAGCGAACGATAAATCCGTGATTATAGAATCACCAT
CATCAGGTGAAATTGAAGTTCAACATGAAAAACAAGGATCTCTAACGAAC
GTCCCCGTTCCTGAAAACATGGAATCACCAAACGATAAATCTCTCGTGAC
AGAATCTTCATCAGGAGGAGAAATGGACGAAGAACAACAAGAACCTACAA
CTAACCACGATGTTCCTGTGGAGGTTAGGGACAAGATGGGGAGTCAACAT
CAAGGGGTAATTTGTGTAGACGCACCACCTTGCAATCGCTCGAATGTGTC
AAGCCACCCAAAGGAGACAGAGGGATCTTCCTATGAGGTGACTGACATTG
CATGCAGTCCAATGCCTAAACATATTCAACAAGAGGAAGCATCAATGACG
AGTGAACGAAACTCATCGTGTGGTGTGACAAGCGGGACAATGGACTCCTT
AAGTGACGAACCTAACAGTTTAGGATCTTTCATTGTTGATGATGAAGCTG
AACGATCAGATTCATCCATGATCCAGCTGCAACCGAAAATCCTGGAAGAT
CTGGGTAAAGGTTATCGAACACCTCCTGTATCTCCCGTTGTCTCTTTACT
GATGAAAGAAACCAATCGACTGAGCAGAGATGCCAGTACTCCTTTGATGA
AAGGGAGATTTTTGTATGGAGATGATATCACCGACAGAATGTTGCCCGAC
AAACCAACCGCAACACCAAAGAAGACAGTCAAAACTCCTAAGAAAGTGAC
TGAAACCCCTAAGAAGCAAGTCCAACCATTGTCAACGTCTTTCAAAATGC
ATGCTTCACCAGGGAAACCTGTTTCACCAGCAGACAGACCAATGCACCCA
AGGGACGATCATCATGACGCGATTTCAATCCACATCTCAGAGGAATCAAG
TGCAAGTCTTTACGAAACCAAAGATACTTCGTGTAGTCCAATCAAAGATC
TGGAAGGATCTATCGAAGCAGATTCCAAGATTGAACAAGAATCAAGTGAC
GGATCTAGTAGTGGAAGTGAAcgaagtgaaaatgaaagtagcACAGACTG
TGAGACTGATTCTGAGATCTCGGAAAGCGAACAATCAAACAATACGACCC
AAGAAACAGCTACTGATGTATCTCATAATGTATTGGAAGTTAAAGAGAAG
AGTATTATCCAATCAGTGTCCGAATCGTTCGGTCGTGGAAGAATTATTCC
CTCGCCGCCAATGATGTTTGATTCACCACCACGTGACCAAGCAAACAAAA
TAACCGAAGATGCAGAATCACCGAAGGACACTACCGCAAACACGTCTACC
AACTTTGCAAACCTTTCAAACCAAAGTGAAACATTAGAGCAAACAGGTCC
AATGAATTATACGCATGTCGGCAATAGTCCTTCCTCTAAACGCCGCAGTA
AAGCTTCCACTTTTTTTGACAACTCAACGAAGTCAGATGATCAATCTGCT
TACGAGATCAAGATCGAATTAGGTGAATCACAATTTGCAGATACTCAACC
CATCGATGTATCGGTGTATGAGACCGATGAgtccttcaaaaaaaattcat
ccatTCATTCCCGTGTGTCAGTCGTTCTTGAAAACTCCACACCACAAGAT
GCAATGGATGCCAACACCACAGAGGATAGTGAGGCGAGCTTCGATTTGGA
TCGATTGAATCGAAGAAAAGAGCAATCGGATGGTATCGAAGAACGATCGG
TGATTAAAGATAGCTTCGATGAAAACGAGCAAGTTGACTTGCTGAGCCAA
ACAATCGATAATATGAAGATCAAAGAAACGGCAATTCAAGAACCACAACA
ACCATCGAACGATTTTGACAACGAAGAGCGTATCAAACTTCTAAACGTCA
AATCTCTACTTTTGAAATATATGGGAGATAAAAATATTCCGGAGAAAAAA
CTAATCAAAATAGTAGACTTGCTTGATGAACTTAATTTGTGATGAAGTTG
ATGTTCGTAACATGTTGTGTTAAATAAAGCTGATTATTTCAAAACCACGT
GACATTCCTCGCCGATTACCCACCTACCATGCAAGTGGGTTAATGTCCGT
CAAAAGAAATTCCTTTTGTCAATCGCAAGCACGTCGATTACGCAAGATGA
CATTATCAAAAAGGGGCAATaacattttgttgatattttcgatttttcta
tACATTTGTATCATTATTTTGTACTCCAGACATATCTTTGCTACGCTTGA
AAACAAATGTTGTAAATGACCTCAAATAATGACGACTTTTAGTCTTTTTG
CTAAGCgttagtttttctaaattagATTAGCTAAGTATATAGAGT

Run BLAST on NCBI

transcript from alignment at scaffold_153:28858..44082+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049140 ID=TCONS_00049140|Name=TCONS_00049140|organism=Clytia hemisphaerica|type=transcript|length=15225bp|location=Sequence derived from alignment at scaffold_153:28858..44082+ (Clytia hemisphaerica)
TGCGATTCAAAATAGTTCCAACTGATGTAAGTCTAACATAATAATGTATG
CATTTTTTACTGATATTTTGTGAGCATTGAGAGTTTCAtcacattttcct
tgaaagcAGTTGAAAGTTTCTTCTCTTAAAAATCTTCACGTCAAGGTGGG
ACAGCGGGCAGaatattgtgcttattatgtgaaatttatctcaattttag
aaaaagacTTTTTATACATTTCATGGAAAGAAGTAgcaactcaatatgag
tcaagaTGGATATAATATAAGATATGTATAATAAATGATCTATAATATGT
TTTAGGAGTACATTACTGAGCtcaatgaagaagaagatgaagaagaagat
gaagaccCTGACATGATTGACATCGGAAAACAATTTTATTTGCATAAAAG
TATTGCTAACCAATTGTATGATTACCAAAAAGAAGGTGTTCTTTGGTTCT
GGAAACTTTACAATCGTAAACAAGGCGGCATCCTTGGGGATGATATGGGG
TAGGCATTTTCGAACCGAATGTTTTAGTACTCTTTTCTGGTTTTTATACC
CTCCATTTCAatacaatattttcaaatttgaatgtTTGGTGCTTAGATGA
GGAAGGCAGTtatttcaaaactcaattttagaTGTGGCACTTTTTAGAGA
GGGGGCTTCAAAAAAGAGGAAATATTANAAAGGCAGttacatagcgtcag
ccccccctgctggttggggggggttacaccctaaaTTGTTCCCAAAAGAG
GAGagggctggaagtacaccacttttttggggggacctatgtactcgggg
gagctaaaatctcatcacttaacgtgggggctaaaataattcagcttaat
agttggcttcaattactcaaattgaagctcatgaatctgaaaaattttcg
cctgcggaaattatcttaaacttagaagtgaacgcaatttacattggaat
aacctttttttactggatcaattttttgaaagtgtctagggtcaaaagtt
ctgggggctaacgaaaaattcataaatctttggggggacttaaaattCAG
TGGGGACCTAGTTtttaaacccaggctgacgctatgagTTATTTCAAAAC
TCAAATTTAGATGTGGCACTTTTTAGAGAGGGGGCTTCAAAAAAGAGGAA
ATATGACTTCTTTATTATAAGTTCCAAAATGATAGTGGTCTATCTAAAAG
ATCAAATTATGTCTAGTAACTATGTAATTCTAGCGAGGACTGGCCTTTAG
AGAGTATTAGAGGTAATGATGAAACTTTAATTCTTTTCTTTAGACTTGGA
AAAACTATTCAAGTCATTTCGTTCATGGCTGGTATGTTTGATGCAGAATT
GATAAAGAATGCAATTATTGTTGCCCCTCTTTCCATCCTTGTCAATTGGG
AAAAGGAATTTGcgaaatggtaaataaatattttgatttcaaagttAGTG
AGTTTTTAAAAATCTCTTGTCAAAATTTCCATGAACCGATCAttaatgaa
ttattttttatgtttttcttcaGGGCAGGAGGGATCCGTATCAAACCATT
TCATGGAACTGCTAAGAAGCAAAGAATGAAGAACcttcataaaattcaaa
ataatgatGGAATATTGATTACTACCTACGGTAATATTATAATTTTAAGG
GCTGcggcatttcaaatttttttaaatcaattaaatgaataatcaatcaa
ttattgTCTAAGAGTGCTCCATGATACGTCTTTacagccaaatatcaaaa
tttattttctttaaaaaaaattaaagcatgCTTTGTATGTATTGTATGTT
TTACTTTTAAAGAGAATAAACTTTGTTTATAATTTCTGTTTAATTTCAAC
TGGATTTTTGTCGTCATAGGTATGGTAGTATCAAATATTAACTCGTTGTG
TGTCGACGAAAATGGTGATCCTTTCGAATGGgtataatgttttcaaattc
agacaaaatctcTGTAAATTTATTAATCATATCCAAGATATTCCTTACTC
CAACTTTGCAATAATATAAAATGGCTAATGATACTCTGCCATGTAATATC
AGCattttctttcgttttcttcGTATATTTTTTGTGAAGGTCAATCATTC
TCTTTGtaaataaaattcatttaatttgaatttttcttgttttaggATTA
CTTGATTTTGGATGAGGGGCATAAGATCAAGAATGCGACAAAAACGAGCA
AATGTGTTCGAAATATTCCATCTAAATATCATTATATCCTAACTGGAACG
CCTGTTCAAAATAATCTGGGTGTGAGGAACTCTTAACTTTACTCCATCAA
ACTGGTTCTTTAAATCTTTGAATCCACAAACTCCACAACTTATTGGCTAA
ACAAGAGTTCTttgtaaaatttcttttgtcaAACAGAACAGCCAATTAAG
GCTAAACCTTGGTCTTGAATTACTTCTTTTTTTTGCAGGAGATGTGGTCG
TTATTTGATTTCACTCAACAAGGACAACTACTGGGAACAAGGAAGACCTT
TGATACTGAGTTTCAAAAACCTATTGTTAGGGTATGTGTATGCAGAAGAT
AATTTGGTGTACAGTACTTGTTTATTGGTGTATCTGTCAAATAAAGTGGT
GTAATGTAGATCATTTCATTCTAAATTTTAGAATGTGTTGTGTTTTTTAG
TCAagctcaaaaattttattctcATTCTCATTTTGATTACCAGGCTAGAG
AGAAAGATGCAAACGAGTACCAGCAACAAGTTGGCAACAAGATCGCTGAA
ACATTACGTAAACTGATTGCACCATATTTTTTGAGGAGAACAAAAGCTGA
AGTGTTCAACCTTAACAAACTTGATGATGAACCATCTACTGAAGCTaata
aagaaaatgttgatcacACTGATGGCAAAAAGAAGAAACAGCCAAAGTAA
GAAATCACCGTCAACATGGCTAAAGTTTTAATCCCAAAATTAGAGTGTTT
GAAAATTGAAGGTTTCTTGAACATATTTCAGTTTTGAGGGGATGTACTCT
TACTTATCAGAAAATAATTAAGcctccacgaaagatgtttgAGGATAGTT
TATTCTACACACTTACTTTTGAGCAGCTTTTAGAGAAAGACGGTGCCATC
AAATTTCACCATAAAAATCTTCAGTTGTTAGcaatagaacttttcaaatg
taaGAATAACATATCAGATCtaattaaagaaatttcaaacacGATGAAAA
TATCTCAAAGTAAGTCGCAAAACGCCTTACTTCAGATCAAGAGAAATAAA
CTCTGTCTTTCACGGTTcagagtcactttcatttttagggccaaAAGTTT
GGGAATTAATTCCGGATGAGTATAGAGATATAGTTGATCTTAGtattcca
ggggggggggtcagtactaaaatgtaagaattacatgagtactaaaagga
ttttcgctaatttttgacatacccccacctatttttcgaaaatgttattt
tagtacacatgtactaaaattattttgagcaattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtttttttgcccttttacggctttaaatttcccaaaatggggtca
ttgttacaaacctagtcgaatttagtgcatcaatctgcaaaataatataa
ttttattactaaactgtgctgaactgtacataaagatatttttagaaaat
atttaaaaaattggaaaaaaatctgaaagatttctgaagattttttcgaa
aattcctggaaaaaaaaatctttttccaaaattgttaaaaaaatgctcca
ttttggctgattttaaaacaaaatactaagattttgcaaaaatttcttta
agggaccaccctttttggtattttagtacacatggtactaaaattatttt
tgagcttttttgcagtaccaccacgtcactaaatgtcatgatgtctgaga
tttaattaccgaccccccccctgagtATTTTCAAGGAAAGCAGTGGAGGC
GTACATCATGCCCGTGCAGAAACTGCGGGACCTTTATTGACGGTGTCGGC
Cttttgtaatcaccttacaaattgtaaagtagcgttgactttattagcct
ttgttgctacctgttcgtcaactttAAATAAACTATTACTACATACATAC
TGGATGTGCCAGAGATAAGTTATCCTCTTCGAAGTTGAAACGTAACATAT
CTTCTGATCTTACGGACCAAAATGATGTCCCAATTTAAGTTCACCTAACc
tctttccaataaaaaagatttgattcttTCAAATCTGATAGAATtcaaga
aaattcacttcaaagaaggTGACTTATTTCTGATATATTCCGTACAATTA
ACATCTTTGTGTGTTTGTTTGTTCTTCAGTATTTTTTGTCATGAAAACCT
GGCGAACGATAAGTTAAATCGCGATCTCGTTAATCTCGTTAGAACtttca
tttctttcttcttgCTTTTACTTAATGTTTTTACTCATGCTATTCTTAAC
ATAATCTTAGTCAGGATCATCCAAAGACGTCGGGCATTTTTAATGTTTCT
GTATACATGACGATAATCTTTTTTAGAGCACCCGAACTTAATACAAGGAA
AAACGATTTGATCATTTGGGTTTATCTCTCCAAACTTCAATTGAAATTGT
ATCAAGGTTTCGTCAACTCAGAACGTGTCAAAGAGGTAATAAAGCTTTGT
AATGGACTTTTGTTGGTTTTTAAGTATTGGATTCACTTACAATTTAGAAT
TATGTTGTGAGATAGGCAAGGGGAACCCAAAAAGTATCATTGTTTAAAGG
AGCTTTTCCAAGTGAACTAAACGTGGCTCAACAAAATAGCAAGCACAACG
gttaaaatttttcattcaaattttttcatttcagtgtTTGGTAACCACAA
GAAGTCCTTTGGCTGAATTGAATTTGTTGAAGAAAATATCTGATCATCCA
CGATTGCAATCAACACTTTCTAAATTGATGACCAGTTCAGCTGAACAACA
AACGCGGTAAATACGTAAATAACCTAAACAAAAAGTATTCTCCTAACTAG
TAAATGAGAAGTCTGTGGAATGGCTCTTTCTCCACTTTTTCAAATCTGTC
TTGATAGATTAGATTTGAGGTATTTGGTTTACATCCAAGAACACGAGGTC
GAAATTCTGGCAAAAAACCTTACAAAATATATGATACaaacatggcgttc
taaattcagAACGCCATGGAAACAAAGAATAATACGAGTctgagaaaata
ttaaaaactttgAGCCCCTTCTGAGCCCTAAGTGAAGAAGCTGAGTGTTT
TAGAACAATCTAGGAATATTTAAATGTctgagaaaataagaacacccGAG
ATATAGCGAAAATTTATTGGTAGCCATAAAAACGTCTCTctattctttct
tcttcttcagtcGTGATTGTGGTTTACCCGACGACCAATCAGATGAAACG
TCCTCCAGTTCAATGGAAGAAGAAGCAGTTGATGGGCCACCTGTCGAAAA
ATTGATTCAAGATTCCGGAAAAATGGTCTTCCTGGCTCAActtatgaaaa
atttgaaagcagAAAAACACAGGACAATCATTTTTAGCCAGTCAAGAAAA
ATGTTGGATATCATACAGAAGACTTTGCTGAGCATGGTAAATTGAAAATT
CGAGTTGTCAATATTTTGCTGTAAGGTCCGAAGACTGCATTCGAAGTTTT
CAATATTACAGTCATATGGTATCCGTCGAGGNTTAAGGTGTGAAGACTGC
ATTCGAAGTTTTCAATATTACAGTCATATGGTATCCGTCGAGGTAAAagg
ggtacacgttttttttattagaacacctaaattttggctgagcctggatg
tgcttattttttagcaattttcagcctgaaatgttcttagatgcgttctt
tttttcagactactctaaatcgacaatatcatgcaaaataaagagcactt
aaaattggtaaaatcgGACAATATTCGACTCtcgatttagaaaatccatt
cctaagtttgtttaaaactgcttgaaaagagggaaaaattgtagtttctt
gtcattttttcaaactgaggctgggcatgttcttacgatgttcttacgat
gttcttaatttttcgacgaatttcagcctcaatgttcttataaactgggt
tctaataaaagaaaaaacgtgtatcgatAAATCGATTTTTACCAGTATTA
TAAAGAGAGATAATCCAATATAtcgaacggtgaaaaagaactTGTTTCAG
AGAATTTGATAGAATTGAGGGATTGTTTTCAATGACTTTTTTGGCACGAT
TTTAGGATCACAAATTGTTACGAATTGACGGTACCATTAGCAACCCATTG
GAGCGTGAAAAGATTATCCAACAGTTTCAATCGGATCGTTCCTTCACTGC
GATGTTGATGACCACACAGGTTGGTAAACAAAATTGTTCTGGCGACTGCG
ACGCTCTATTGAATAACTAGTAAATTAACATTAATTACATACCCAAAACA
GTACAAACGAGATAAATTATTTATTTGACAAAAGATGACAATAGACCATC
AGGATCATTTAAACAACTATtgagatttttgattttctttttcaggttgG
AAGCGTCGGTTTAACGTTGACCAGTGCTGATAGACTTATCATTTGTATGT
ACCCTTCATAATGAAATTGCCCTTGATAGCCGCCTTTTTTAATCCATACT
TTTGCACCggtttataaaagaaagaaaatatactGGTAGCTGGATAGAAT
TTGACTTAGATTGCGATTTTGAGCTATTCCTGTAATCTTGAGTGGAGTAT
TAtcatgtaaaaatattttgaaaaacaattctaaaattaagatgaaaagt
ggagaagaaaaaaatcaatttttgtgaaTCTCAAATCCTTACGCTAATca
ctttgaaagatttttcaaaaaatatttattcaatcaaaagtgGAAGCAGT
AGAAGTTCTTTGTCCAGACttcaaaattacaccaatcagctCAAAATGAA
CCCAATTATTGAATAATGGGtacccttttttgtttttagttgATCCTAGT
TGGAACCCAGGAACTGATGCACAAGCAGTTGATAGGTACgttgttagttt
tttttgataaattatcaactgtcaaatatttttgaaagttgtcACTTTAA
TGATCCTAGTTTCCGTGTTTCTTACATCGTCTTAGCTTGAGGGAAAACAA
AATTTGCTAAGAAAATGACTTTAAAATCTATTATActgccaaaaactgcc
taaaaatagggttttttggactttgtgcaaaatcctgtcattactttttt
ctgattttttgtacaacgatggagggcaagattctctaaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtggaaaattcttattcgccttaaaaa
acggattttcgtattttggggaaattccctttaaccaaataagaaaatat
agcttttctcaatgttgactcatagtttttttctgaatttttgcacaatg
atgcaaaatgacaatacctaaaatgtgacgaaggccgatttccaaaaaac
atttctttccggccgaatatgccggaaaaactggttttttggcattttct
caagattttatcattagttttttctgattttttgctcaaagatgcgtatt
aacaatgccNtgaatttttgcacaatgatgcaaaatgacaatacctaaaa
tgtgacgaaggccgattttcaaaaaacatttctttccggccgaatatgcc
ggaaaaactggttttttggcattttctcaagattttctcattagtttttt
ctgattttttgctcaaagatgcgtattaacaatgcccaaaacatggccga
gttcgatttttgagaaaaattattttccggttgaaaatgccggaaatcgc
cgtgtttgcagattttcattggattttttccttatattcatttctatgtt
tttatacacaaaaacattattgataacaatgctcaccatcaagcatgatt
caattgtcaataaaactgatttttgcgaccagaactttctatttattttt
tccctacaacccttccctctccccccatcaacaatcaatgatgaatttat
tgcgttatgcattttcgctaaacgctatattttctgactgattttttttc
atttttcacctcgcattgctatctaactttcatcatcaggtaggtccatt
cagcatctagcttgttgtcTATATGTCTACCACTGAGTTAGGCTGCTGgt
atccactaacggattcgtgctccttatagattTATATACTACCTGggatt
ttgtagaggtctgtgattcagactaccACCGAGTGTTATACATGTTTGAA
TGAAGAAGAGAAGCTTTAATTAGGTTTATTTATATCTCCATTGCCATTGT
AAAGCAGGTTTCATCAGGTCTGAGCATGCAAACGTTTGAAGGTATTACTT
TGACTTTATTTGGTATacttatgttttgattttagggTTTATCGTGTTGG
ACAAAAGAAAGATGTTGTGATTTATCGATTGATAACGTGTGGCTCGATCG
AGGAGAAAATCTATCGAAAACAGATTTTCAAGAATGCAGTCATGAAACAA
GCAACTGGATCGTCTAATAACCCTTACAGGTAAAGATCTTGTTTTATTGT
ATTATTCTGCAGTAAATCGTTGAGGTACTTTTTAAACCCGTTAAGAGAAA
CAGATATGAAGCTGCagtaatattttaaaatgtcAACCTGAAATTGCTTC
GATATCATTTTCTCCTATTTTGACTGTTGTTTTTGCCAAGTTGCTGTTCT
TCctcaaaaaaacttctcgtaGTTATCTACAAGCATTGCGTATTCCCAAA
GAGAGCTACTTGTTATTATGTTGTTATTTTTCAGACTTTCAGACATCAGG
AAACGACTGAAATTAAGTGCTGTTTTCCTGatgattgatttttttcaaaa
aattggttTTCAGTGAACAAGTCAGGTGACTCAGCTAATTTTCTCGAAAC
CTTTCTTCTCTGTTAAAGATATTTCACGAATCATGAACTGCGAGAACTTT
TCGTTTTGGACGACCCCACCCAATCAACAACACAACAACAATTGAAAGAA
CTGCACCAGAAACCAACCAACACACAACAGGGCTTCCAAAACCATCTCCA
ATTTTTGCAAGAACTAGATTGTAAGTTTTGATTACACAAATAAGCGAATC
TCTTTTAGATGAACTGTTTATAAGGCGTGAATAATGAGAACATCGTTTTC
TTATAGTTGAgcagatttttataagaacaatgaggctcaaagcACTAGAT
AGTAAGAACCGTATATGAACAAGGTGATCCTGAAATCACTGAACTTAAGA
ATCAAAGTAGTCAAAACTTGGGAGTAAAAACTTATTTTCAGCCCCTAAGT
GCCAAAAAAAAGAATAGTCGAGCCTAAACAAAAATCTActtattcttatc
aaacaaatttatagttttgacttatttttttctcaatcaaaGGTATTTAC
GGTGTCAGTCATCACGATCAATTGTTTTCACAAGAAGCGAGAAACACTCA
AACCAATGAGTATGAGGATGCTATCAAAAAGCaggtatttgaaaatattt
ggaaaatctaaCCCTTAGATAATACAAAAAGTAAACTAAATGAGatcaaa
ttgattttgaaaatccatatttttttgttgatgCGGAGTGTTGAAttgta
aaaatttttgttttgataaatttacgtTAAccacttttcatttttagttc
aTCCTTTAAGTACCTTTCAATTTACTGCTATCGCAATTTTCACAATCCGG
TCAAGCCTCGGACCATGTTNGAACCATCTCCAATTTTTGCAAGAACTAGA
TTGTAAGTTTTGATTACACAAATAAGTGAATCTCTTTTAGATGAACTGCT
TATAAGGCGTGAATAATGAGAACATCGTTTTCTTATAGTTGAgcagattt
ttataagaacaatgaggctcaaagcACTAGATAGTAAGAACCGTATATGA
ACAAGGTGATCCTGAAATCAATGAACTTAAGTTATCAAAGTAGTCAAAAC
TTGGGAGTAAAAACTTATTTTCAGCCCCTAAGTGCCAAAAAAAAGAATAG
TCGAGCCTAAACAAAAATCTActtattcttatcaaacaaatttatagttt
tgacttatttttttctcaatcaaaGGTATTTACGGTGTCAGTCATCACGA
TCAATTATTTTCACAAGAAGCGAGAAACACTCAAACCAATGAGTATGAGG
ATGCTATCAAAAAGCaggtatttgaaaatatttggaaaatctaaCCCTTA
GATAATACAAAAAGTAAACTAAATGAGatcaaattgattttgaaaatcca
tatttttttgttgatgCGGAGTGTTGAAttgtaaaaatttttgttttgat
aaatttacgtTAAccacttttcatttttagttcaTCCTTTAAGTACCTTT
CAATTTACTGCTATCGCAATTTTCACAATCCGGTCAAGCCTCGGACCATG
TTTGAAGATTAAAAACCACTTTTTGAGAGTGAAGATAAGAGCTGTTTTCT
TTTACCTCTTTTTTGTTAAGGTGAACAACGCAGAACGCCGTGTACGTGAA
GAGTTCAACGACGTCGATTTCTCGCCACGAAAATATAAACCACGCTCTCA
TGTATGTGTAATCATTGATCCTCTCACGTGTAAAAGTTGTGAACCCCCTT
CCTAACTTTAATGGGTGTCCGTTTCAGAAACCTCGATCGAGTCTTCGATT
TCGTCCCCGATCCAATCACCATTttccttatcggccctttttacttCGAC
CCTATTCGGCGTTATTTTTTTGTCGTTGGcgttggcgtaataagggccgg
tgtatgGGGTTTGGAATAAAATTAGAGCTGGgctgaaaatggaaaaaaaa
ctgatttttggcTTAATATGGGNGTTTTCACAAGAAGCGAGAAACACTCA
GACCAATGAGTATGAGGATGCTATCAAAAAGCAggtatttgaaaataatt
ggaAAATCTAACCCTTAGATGATACAAAAAGTAAACTAAATGAGatcaaa
ttgattttgaaaatccatatttttttgttgatgCTCCtcattgtttttta
atttttaatttatagaagtgtatttctcaggtctattgacctctatgaaa
caatcttacatctttacaatttatagatcttatcttTCCATTCGTTTGTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGg
tggtaaatttccaaaaaatgttatatccttcaTATTCAGTGTTTTTGCTG
GAAAAGCCTAATTTAAGTGTGAATAAACGAGAGTGTTTTTTGCTTGAGTT
AAGTAAGAAGCAAATCCAAGGGGAACGCCATCTCACTTCGAATAACTGAA
TTATTCGAGTAAGGGCAGTTTCGAATAACCTGGGGTCTACTGTACTTGTT
TTTGTCATAATAATTAAAGAATTCAACagaattttccatttttatagGAT
GGTGAGGATACTGAATACATCAAGCTTGGCCGCCCACCGCCATCGCCCGC
GACAAATAGAGATATTCAGAACCTTGATATTAGCATGGGAAATTTGAAAC
TGaaagagaatgaaagtgaagcGAGTTTCACAAGTGAAGGAAGGTGAGAG
TTTTCATGATACAAATTATACTGAACCTTGGAATAAGGCTTGAGATTTGT
AAATTTCGGACAAAAGTAGCCTAACTGCTTCCGGAATCTGAATCGGAAAA
TGATTCTTAGAAAAATATGTTCTCTGAAATACATTCCCTTGAGTTGGCTC
CGTTGCAACGAAGTCTTTTAGAACTCAGCAATGTTTCGTTATTTCCCATT
CGTTTTCCACGCCTCATTCTTTTCAAAGCTGCAATTGATAACATCAACTC
TTAACATTGTTTTCCTTATGTTTCAGCAACACTCAGAGCTTTGATAGCAG
AGTTTTGGATCGATCCTCATTGTCACAAAATCAACAAAGCTCTTACGTAG
AAAGCCAAAGCGATAATACATCAATACGGGTAGAGAGCaatgtgacgtca
caaaatgAAACAGGCGAAGAAGCAGCGAACGATAAATCCGTGATTATAGA
ATCACCATCATCAGGTGAAATTGAAGTTCAACATGAAAAACAAGGATCTC
TAACGAACGTCCCCGTTCCTGAAAACATGGAATCACCAAACGATAAATCT
CTCGTGACAGAATCTTCATCAGGAGGAGAAATGGACGAAGAACAACAAGA
ACCTACAACTAACCACGATGTTCCTGTGGAGGTTAGGGACAAGATGGGGA
GTCAACATCAAGGGGTAATTTGTGTAGACGCACCACCTTGCAATCGCTCG
AATGTGTCAAGCCACCCAAAGGAGACAGAGGGATCTTCCTATGAGGTGAC
TGACATTGCATGCAGTCCAATGCCTAAACATATTCAACAAGAGGAAGCAT
CAATGACGAGTGAACGAAACTCATCGTGTGGTGTGACAAGCGGGACAATG
GACTCCTTAAGTGACGAACCTAACAGTTTAGGATCTTTCATTGTTGATGA
TGAAGCTGAACGATCAGATTCATCCATGATCCAGCTGCAACCGAAAATCC
TGGAAGATCTGGGTAAAGGTTATCGAACACCTCCTGTATCTCCCGTTGTC
TCTTTACTGATGAAAGAAACCAATCGACTGAGCAGAGATGCCAGTACTCC
TTTGATGAAAGGGAGATTTTTGTATGGAGATGATATCACCGACAGAATGT
TGCCCGACAAACCAACCGCAACACCAAAGAAGACAGTCAAAACTCCTAAG
AAAGTGACTGAAACCCCTAAGAAGCAAGTCCAACCATTGTCAACGTCTTT
CAAAATGCATGCTTCACCAGGGAAACCTGTTTCACCAGCAGACAGACCAA
TGCACCCAAGGGACGATCATCATGACGCGATTTCAATCCACATCTCAGAG
GAATCAAGTGCAAGTCTTTACGAAACCAAAGATACTTCGTGTAGTCCAAT
CAAAGATCTGGAAGGATCTATCGAAGCAGATTCCAAGATTGAACAAGAAT
CAAGTGACGGATCTAGTAGTGGAAGTGAAcgaagtgaaaatgaaagtagc
ACAGACTGTGAGACTGATTCTGAGATCTCGGAAAGCGAACAATCAAACAA
TACGACCCAAGAAACAGCTACTGATGTATCTCATAATGTATTGGAAGTTA
AAGAGAAGAGTATTATCCAATCAGTGTCCGAATCGTTCGGTCGTGGAAGA
ATTATTCCCTCGCCGCCAATGATGTTTGATTCACCACCACGTGACCAAGC
AAACAAAATAACCGAAGATGCAGAATCACCGAAGGACACTACCGCAAACA
CGTCTACCAACTTTGCAAACCTTTCAAACCAAAGTGAAACATTAGAGCAA
ACAGGTCCAATGAATTATACGCATGTCGGCAATAGTCCTTCCTCTAAACG
CCGCAGTAAAGCTTCCACTTTTTTTGACAACTCAACGAAGTCAGATGATC
AATCTGCTTACGAGATCAAGATCGAATTAGGTGAATCACAATTTGCAGAT
ACTCAACCCATCGATGTATCGGTGTATGAGACCGATGAgtccttcaaaaa
aaattcatccatTCATTCCCGTGTGTCAGTCGTTCTTGAAAACTCCACAC
CACAAGATGCAATGGATGCCAACACCACAGAGGATAGTGAGGCGAGCTTC
GATTTGGATCGATTGAATCGAAGAAAAGAGCAATCGGATGGTATCGAAGA
ACGATCGGTGATTAAAGATAGCTTCGATGAAAACGAGCAAGTTGACTTGC
TGAGCCAAACAATCGATAATATGAAGATCAAAGAAACGGCAATTCAAGGT
ATGTAGATTTTCTTCATTCTTTATCGAATTGTGTTCAGACAATCGAATTG
TGTTCAGTGTTTGTATCctataatttctttttctcaCTGAAGCAAACGCT
GTATAGAAATGCCATAATGAGAACGAAGTTTCTTAGAGCAAGACATCTAA
CGATATTTAACCTCGCAtaaagaaaagttgaaaaaagtgAAGGAAAGGTC
AAAATGAAAGTACTTCGTTCTTAAAAGTCTGAAAGCCCGAAACCTACACA
ATTAAAATTACAAACAAGCGCCTGTCTCTTAACTAACATCTTGTGTGATC
TGTTTTTTTAGACAAAGGTTTCCATTCGAATTTGAAGGATAGATTTAAGT
AACTTTGAGAACTTTCTTTCTGAAAGCCTGAATGCTTAGCTTTTGCTTGA
TATACTAGATGGTCGAGGATAGGACAAGTTATACGACTTTTCCAAAGTTT
TAGCGTTTTAGAATATAGGATatgttttttaaatgatttgacaacaaatg
ttttttcttttggcTTTCAGAACCACAACAACCATCGAACGATTTTGACA
ACGAAGAGCGTATCAAACTTCTAAACGTCAAATCTCTACTTTTGAAATAT
ATGGGAGATAAAAATATTCCGGAGAAAAAACTAATCAAAATAGTAGACTT
GCTTGATGAACTTAATTTGTGATGAAGTTGATGTTCGTAACATGTTGTGT
TAAATAAAGCTGATTATTTCAAAACCACGTGACATTCCTCGCCGATTACC
CACCTACCATGCAAGTGGGTTAATGTCCGTCAAAAGAAATTCCTTTTGTC
AATCGCAAGCACGTCGATTACGCAAGATGACATTATCAAAAAGGGGCAAT
aacattttgttgatattttcgatttttctatACATTTGTATCATTATTTT
GTACTCCAGACATATCTTTGCTACGCTTGAAAACAAATGTTGTAAATGAC
CTCAAATAATGACGACTTTTAGTCTTTTTGCTAAGCgttagtttttctaa
attagATTAGCTAAGTATATAGAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031228	XLOC_031228	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_153	supercontig	scaffold_153:28858..44082 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.8925	38.995	20.5467	18.0109	5.61839	2.02272	6.43084	7.26087	5.98467	7.95838	4.73578	3.00604	2.02882	4.90497	8.27434	10.9704	11.2032	10.2644	1.19024	1.93942	4.50038	4.77496	14.1218	14.8229	8.67843	7.08748	2.18232	1.98962	8.6904	10.1022

Blast

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BLAST of TCONS_00049140 vs. Swiss-Prot (Human)
Match: ERC6L (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 313/696 (44.97%), Postives = 454/696 (65.23%), Query Frame = 3

Query:  105 FYLHKSIANQLYDYQKEGVLWFWKLY-NRKQGGILGDDMGLGKTIQVISFMAGMFDAELIKNAIIVAPLSILVNWEKEFAKWAGGIRIKPFHGTAKKQRMKNLHKIQNNDGILITTYGMVVSNINSLCVDENGDPFEWDYLILDEGHKIK-NATKTSKCVRNIPSKYHYILTGTPVQNNLGEMWSLFDFTQQGQLLGTRKTFDTEFQKPIVRAREKDANEYQQQVGNKIAETLRKLIAPYFLRRTKAEVFNLNKLDDEPSTEANKENVDHTDGKKKKQPKAPELNTRKNDLIIWVYLSKLQLKLYQGFVNSERVKECLVTTRSPLAELNLLKKISDHPRLQST----LSKLMTSSAEQQTRRDCGLPXXXXXXXXXXXXXXXAVDGPPVEKLIQDSGKMVFLAQLMKNLKAEKHRTIIFSQSRKMLDIIQKTLLSMDHKLLRIDGTISNPLEREKIIQQFQSDRSFTAMLMTTQVGSVGLTLTSADRLIIFDPSWNPGTDAQAVDRVYRVGQKKDVVIYRLITCGSIEEKIYRKQIFKNAVMKQATGSSNNPYRYFTNHELRELFVLDDPTQSTTQQQLKELHQKPTNTQQGFQNHLQFLQELDCIYGVSHHDQLFS------QEARNTQTNEYEDAIKKQVNNAERRVREEFNDVDFSPRKYKPRSHDGEDTEYI----------KLGRPPPSPA 2126
              L++ + NQL+++QKEG+ + + LY + ++GGIL DDMGLGKT+Q+I+F++GMFDA L+ + +++ P +++  W KEF KW  G+R+K FHG +K +R +NL++IQ  +G++ITTY M+++N   L     G  F WDY+ILDE HKIK ++TK++ C R IP+    +LTGTP+QNNL E+WSLFDF  QG LLGT KTF  E++ PI RAREKDA   ++ +G KI+E L  +I PYFLRRTK +V    K    P    N++N D  D       + P L +RKNDLIIW+ L  LQ ++Y+ FV+ + +KE L+ TRSPLAEL +LKK+ DHPRL S     L  L T SA+     +              S + + +D    + L+++SGKM+FL  L+K L+ E H+T++FSQSR++L+II++ L +   K LRIDGT+++ LEREK I  FQ ++ ++  L+TTQVG VGLTLT+A R++IFDPSWNP TDAQAVDRVYR+GQK++VV+YRLITCG++EEKIYR+Q+FK+++++Q TG   NP+RYF+  ELRELF ++D   S TQ QL+ LH     +      H+ +LQ L  I G+S HD +++      +E    + + Y   I+++V  A+  V  E  + +F   + + R+      E +          KL +P P P+
Sbjct:   86 LLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLS-SFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV--QKKKSSNPEARLNEKNPD-VDAI----CEMPSL-SRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGE-------------DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLG-IAGISDHDLMYTCDLSVKEELDVVEESHY---IQQRVQKAQFLVEFESQNKEFLMEQQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPS 755

The following BLAST results are available for this feature:

BLAST of TCONS_00049140 vs. Swiss-Prot (Human)

BLAST of TCONS_00049140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERC6L	0.000e+0	44.97	DNA excision repair protein ERCC-6-like OS=Homo sa...	[more]

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TCONS_00049140 (transcript) - C. hemisphaerica